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Autophagy Reports, Volume 2, Issue 1 (2023)

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Autophagy Reports, Volume 2, Issue 1 (2023)

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Review

Autophagy in protists and their hosts: When, how and why?

Patricia Silvia Romano, Takahiko Akematsu, Sébastien Besteiro, Annina Bindschedler, Vern B. Carruthers, Zeinab Chahine, Isabelle Coppens, Albert Descoteaux, Thabata Lopes Alberto Duque, Cynthia Y. He, Volker Heussler, Karine G. Le Roch, Feng-Jun Li, Juliana Perrone Bezerra de Menezes, Rubem Figueiredo Sadok Menna-Barreto, Jeremy C. Mottram, Jacqueline Schmuckli-Maurer, Boris Turk, Patricia Sampaio Tavares Veras, Betiana Nebai Salassa & María Cristina Vanrell

Article: 2149211

Published online: 09 Mar 2023

AbstractforAutophagy in protists and their hosts: When, how and why? | Full Text | References | PDF (9.9 MB) | EPUB

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Autophagic Punctum

Article Commentary

Neuronal Autophagy by the Numbers

Sydney E. Cason, Saurabh S. Mogre, Elena F. Koslover & Erika L. F. Holzbaur

Article: 2163091

Published online: 11 Jan 2023

First Page PreviewforNeuronal Autophagy by the Numbers | Full Text | References | PDF (928.5 KB) | EPUB

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Article Commentary

The ubiquitin E3 ligase TRIM27 emerges as a new player in mitophagy

Anne Kristin McLaren Berge, Juncal Garcia-Garcia, Eva Sjøttem & Hallvard Lauritz Olsvik

Article: 2164089

Published online: 05 Jan 2023

AbstractforThe ubiquitin E3 ligase TRIM27 emerges as a new player in mitophagy | Full Text | References | PDF (655.6 KB) | EPUB

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Autophagic punctum

Article Commentary

PRKN regulates inner mitochondrial membrane PHB2 during mitophagy

Shan Sun, Hongfeng Wang, Qilian Ma, Ningning Li, Mian Cao, Kin Yip Tam & Zheng Ying

Article: 2164643

Published online: 16 Jan 2023

AbstractforPRKN regulates inner mitochondrial membrane PHB2 during mitophagy | Full Text | References | PDF (528.4 KB) | EPUB

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Article Commentary

A novel regulator of selective autophagy: TNIP1/ABIN-1 modulates mitophagy

Rosetta Merline & Liliana Schaefer

Article: 2165269

Published online: 11 Jan 2023

AbstractforA novel regulator of selective autophagy: TNIP1/ABIN-1 modulates mitophagy | Full Text | References | PDF (140.7 KB) | EPUB

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Article Commentary

Sorting trash from treasure: Separate pathways for autophagy and endocytic trafficking in axons

Vineet Vinay Kulkarni & Sandra Maday

Article: 2166322

Published online: 19 Jan 2023

AbstractforSorting trash from treasure: Separate pathways for autophagy and endocytic trafficking in axons | Full Text | References | PDF (378.3 KB) | EPUB

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Article Commentary

Sugar coating autophagy: exploring the links between the inhibition of NGLY1 (N-glycanase 1) and autophagy induction

Holger B. R. Kramer & Sarah Ann Allman

Article: 2166324

Published online: 16 Jan 2023

AbstractforSugar coating autophagy: exploring the links between the inhibition of NGLY1 (N-glycanase 1) and autophagy induction | Full Text | References | PDF (366.6 KB) | EPUB

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Research Paper

Article

Upregulation of the ESCRT pathway and multivesicular bodies accelerates degradation of proteins associated with neurodegeneration

Ron Benyair, Sai Srinivas Panapakkam Giridharan, Pilar Rivero-Ríos, Junya Hasegawa, Emily Bristow, Eeva-Liisa Eskelinen, Merav D Shmueli, Vered Fishbain-Yoskovitz, Yifat Merbl, Lisa M Sharkey, Henry L. Paulson, Phyllis I Hanson, Samarjit Patnaik, Ismael Al-Ramahi, Juan Botas, Juan Marugan & Lois S. Weisman

Article: 2166722

Published online: 22 Jan 2023

AbstractforUpregulation of the ESCRT pathway and multivesicular bodies accelerates degradation of proteins associated with neurodegeneration | Full Text | References | PDF (4.9 MB) | EPUB

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Article Commentary

Fatal attraction: Dengue Virus and the Mitochondrial Connection

Bharati Singh, Avula Kiran, Shamim A Sufi & Gulam Hussain Syed

Article: 2167429

Published online: 19 Jan 2023

AbstractforFatal attraction: Dengue Virus and the Mitochondrial Connection | Full Text | References | PDF (1.4 MB) | EPUB

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Research Paper

Article

Peroxin 14 tags peroxisomes and interacts with Nbr1 for pexophagy in the filamentous insect pathogenic fungus Beauveria bassiana

Hai-Yan Lin, Jia-Hui Lei, Jin-Li Ding, Yue-Jin Peng, Hao Zhang, Ming-Guang Feng & Sheng-Hua Ying

Article: 2168337

Published online: 29 Jan 2023

AbstractforPeroxin 14 tags peroxisomes and interacts with Nbr1 for pexophagy in the filamentous insect pathogenic fungus Beauveria bassiana | Full Text | References | PDF (5.7 MB) | EPUB

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Report

Brief Report

Venetoclax inhibits autophagy in chronic lymphocytic leukemia cells

Yongqiang Chen, Sara E. F. Kost, Xiaoyan Yang, Versha Banerji, James B. Johnston, Sachin Katyal & Spencer B. Gibson

Article: 2169518

Published online: 07 Feb 2023

AbstractforVenetoclax inhibits autophagy in chronic lymphocytic leukemia cells | Full Text | References | PDF (1.7 MB) | EPUB

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Autophagic punctum

Article Commentary

Chaperone-Mediated Autophagy Regulates Hypoxic Pathology in Cardiomyocytes

Rajeshwary Ghosh & J. Scott Pattison

Article: 2174337

Published online: 07 Feb 2023

First Page PreviewforChaperone-Mediated Autophagy Regulates Hypoxic Pathology in Cardiomyocytes | Full Text | References | PDF (139.7 KB) | EPUB

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Article Commentary

Lipid-sensor FFAR1 curbs autophagy and mitochondrial respiration in murine retinal angiomatous proliferation

Émilie Heckel & Jean-Sébastien Joyal

Article: 2177932

Published online: 21 Feb 2023

First Page PreviewforLipid-sensor FFAR1 curbs autophagy and mitochondrial respiration in murine retinal angiomatous proliferation | Full Text | References | PDF (567 KB) | EPUB

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Review

Autophagy in the eye: from physiology to pathophysiology

Paloma B. Liton, Kathleen Boesze-Battaglia, Michael E. Boulton, Patricia Boya, Thomas A. Ferguson, Ian G. Ganley, Anu Kauppinnen, Gordon W. Laurie, Noboru Mizushima, Hideaki Morishita, Rossella Russo, Jaya Sadda, Rajalekshmy Shyam, Debasish Sinha, Debra A. Thompson & David N. Zacks

Article: 2178996

Published online: 01 Mar 2023

AbstractforAutophagy in the eye: from physiology to pathophysiology | Full Text | References | PDF (3.6 MB) | EPUB

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Research Paper

Article

External stimulation induces the secretion of autophagosome-like vesicles by B cells

Yu-Diao Kuan, Chao-Yuan Tsai, Shuhei Sakakibara, Daron M. Standley & Hitoshi Kikutani

Article: 2179287

Published online: 21 Feb 2023

AbstractforExternal stimulation induces the secretion of autophagosome-like vesicles by B cells | Full Text | References | PDF (7.2 MB) | EPUB

1008 Views
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Article

Gamma-aminobutyric acid type A receptor alpha 4 coordinates autophagy, inflammation, and immunometabolism to promote innate immune activation

Jin Kyung Kim, Prashanta Silwal, Young Jae Kim, Sang Min Jeon, In Soo Kim, June-Young Lee, Jun Young Heo, Sang-Hee Lee, Jin-Woo Bae, Jin-Man Kim, Jin Bong Park & Eun-Kyeong Jo

Article: 2181915

Published online: 01 Mar 2023

AbstractforGamma-aminobutyric acid type A receptor alpha 4 coordinates autophagy, inflammation, and immunometabolism to promote innate immune activation | Full Text | References | PDF (5.6 MB) | EPUB

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Autophagic punctum

Article Commentary

Regulation of plant autophagy by YWHA/14-3-3 proteins

Hua Qi, Yao Wang, Li-Juan Xie, Qing-Qi Lin & Rong-Liang Qiu

Article: 2184015

Published online: 01 Mar 2023

AbstractforRegulation of plant autophagy by YWHA/14-3-3 proteins | Full Text | References | PDF (348.1 KB) | EPUB

497 Views
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Research Paper

Article

Kinetics of autophagic activity in nanoparticle-exposed lung adenocarcinoma (A549) cells

Arnold Sipos, Kwang-Jin Kim, Constantinos Sioutas & Edward D. Crandall

Article: 2186568

Published online: 15 Mar 2023

AbstractforKinetics of autophagic activity in nanoparticle-exposed lung adenocarcinoma (A549) cells | Full Text | References | PDF (4.3 MB) | EPUB

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Review

Atg8 family proteins, LIR/AIM motifs and other interaction modes

Vladimir V. Rogov, Ioannis P. Nezis, Panagiotis Tsapras, Hong Zhang, Yasin Dagdas, Nobuo N. Noda, Hitoshi Nakatogawa, Martina Wirth, Stephane Mouilleron, David G. McEwan, Christian Behrends, Vojo Deretic, Zvulun Elazar, Sharon A. Tooze, Ivan Dikic, Trond Lamark & Terje Johansen

Article: 2188523

Published online: 19 Mar 2023

AbstractforAtg8 family proteins, LIR/AIM motifs and other interaction modes | Full Text | References | PDF (4 MB) | EPUB

3690 Views
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Review

Does Exercise Regulate Autophagy in Humans? A Systematic Review and Meta-Analysis

Xiang-Ke Chen, Chen Zheng, Parco Ming-Fai Siu, Feng-Hua Sun, Stephen Heung-Sang Wong & Alvin Chun-Hang Ma

Article: 2190202

Published online: 17 Mar 2023

AbstractforDoes Exercise Regulate Autophagy in Humans? A Systematic Review and Meta-Analysis | Full Text | References | PDF (11.2 MB) | EPUB

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Research Paper

Article

Survival of intracellular pathogens in response to mTORC1- or TRPML1-TFEB-induced xenophagy

Mariana I. Capurro, Akriti Prashar, Xiaodong Gao & Nicola L. Jones

Article: 2191918

Published online: 19 Mar 2023

AbstractforSurvival of intracellular pathogens in response to mTORC1- or TRPML1-TFEB-induced xenophagy | Full Text | References | PDF (4.2 MB) | EPUB

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Article

A novel autophagy inhibitor, bTBT, disturbs autophagosome formation

Momoka Chiba, Mai Yanagawa, Yurika Oyama, Shingo Harada, Tetsuhiro Nemoto, Akira Matsuura & Eisuke Itakura

Article: 2194620

Published online: 06 Apr 2023

AbstractforA novel autophagy inhibitor, bTBT, disturbs autophagosome formation | Full Text | References | PDF (2.6 MB) | EPUB

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Autophagic Punctum

Article Commentary

A crosstalk between phosphorylation and ubiquitination of BNIP3 regulates mitophagy under hypoxia

Yun-Ling He, Jian Li, Yan Cao, Hai-Tao Wu & Li-Ying Wu

Article: 2197637

Published online: 04 Apr 2023

AbstractforA crosstalk between phosphorylation and ubiquitination of BNIP3 regulates mitophagy under hypoxia | Full Text | References | PDF (406.3 KB) | EPUB

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Article Commentary

Takeshi Yamamoto, Jun Nakamura, Yoshitsugu Takabatake & Yoshitaka Isaka

Article: 2200341

Published online: 10 Apr 2023

AbstractforObesity-related proximal tubulopathy: an emerging threat to kidney health | Full Text | References | PDF (857.6 KB) | EPUB

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Autophagic punctum

Article Commentary

Autophagy safeguards conidial environmental persistence in filamentous fungi

Jin-Li Ding, Ming-Guang Feng & Sheng-Hua Ying

Article: 2205343

Published online: 25 Apr 2023

AbstractforAutophagy safeguards conidial environmental persistence in filamentous fungi | Full Text | References | PDF (286.9 KB) | EPUB

311 Views
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Article Commentary

Conserved regulation of autophagosome-lysosome fusion through YKT6 phosphorylation

Pablo Sánchez-Martín & Claudine Kraft

Article: 2210946

Published online: 10 May 2023

AbstractforConserved regulation of autophagosome-lysosome fusion through YKT6 phosphorylation | Full Text | References | PDF (343.4 KB) | EPUB

406 Views
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Article Commentary

Interplay between septins and ubiquitin-mediated xenophagy during Shigella entrapment

Damián Lobato-Márquez, José Javier Conesa, Ana Teresa López-Jiménez, Michael E. Divine, Jonathan N. Pruneda & Serge Mostowy

Article: 2213541

Published online: 17 May 2023

AbstractforInterplay between septins and ubiquitin-mediated xenophagy during Shigella entrapment | Full Text | References | PDF (264.5 KB) | EPUB

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Article Commentary

Cargo-interacting regions (CIR) of CCPG1 capture ER luminal cargos for reticulophagy

Haruka Chino, Shunsuke Ishii, Noboru Mizushima & Eisuke Itakura

Article: 2213560

Published online: 16 May 2023

AbstractforCargo-interacting regions (CIR) of CCPG1 capture ER luminal cargos for reticulophagy | Full Text | References | PDF (171.7 KB) | EPUB

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Article Commentary

Discovery of small-molecule inhibitors for the protein-protein interactions involving ATG5

Honggang Xiang & Renxiao Wang

Article: 2215617

Published online: 27 May 2023

AbstractforDiscovery of small-molecule inhibitors for the protein-protein interactions involving ATG5 | Full Text | References | PDF (458.6 KB) | EPUB

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Research Paper

Article

Neurodegenerative disease-associated inclusion bodies are cleared by selective autophagy in budding yeast

Austin Folger, Chuan Chen, Marie-Helene Kabbaj, Karina Frey & Yanchang Wang

Article: 2236407

Published online: 07 Aug 2023

AbstractforNeurodegenerative disease-associated inclusion bodies are cleared by selective autophagy in budding yeast | Full Text | References | PDF (6.3 MB) | EPUB

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Article

Shear stress induces autophagy in Schlemm’s canal cells via primary cilia-mediated SMAD2/3 signaling pathway

Myoung Sup Shim, Angela Dixon, April Nettesheim, Kristin M. Perkumas, W. Daniel Stamer, Yang Sun & Paloma B. Liton

Article: 2236519

Published online: 20 Jul 2023

AbstractforShear stress induces autophagy in Schlemm’s canal cells via primary cilia-mediated SMAD2/3 signaling pathway | Full Text | References | PDF (4.1 MB) | EPUB

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Autophagic Punctum

Article Commentary

Tweaking Ire1 to Unlock Autophagy in Yeast

Eshita Das & Ipsita Roy

Article: 2241124

Published online: 13 Aug 2023

First Page PreviewforTweaking Ire1 to Unlock Autophagy in Yeast | Full Text | References | PDF (315.8 KB) | EPUB

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Article Commentary

Protein disorder in the regulatory control of mitophagy

Sheridan Mikhail & Scott A. Soleimanpour

Article: 2242054

Published online: 01 Aug 2023

AbstractforProtein disorder in the regulatory control of mitophagy | Full Text | References | PDF (490.1 KB) | EPUB

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Research Paper

Article

DRAM1 confers resistance to Salmonella infection

Samrah Masud, Jiajun Xie, Bart J.M. Grijmans, Sander van der Kooij, Rui Zhang, Tomasz K. Prajsnar & Annemarie H. Meijer

Article: 2242715

Published online: 24 Aug 2023

AbstractforDRAM1 confers resistance to Salmonella infection | Full Text | References | PDF (2.9 MB) | EPUB

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Autophagic Punctum

Article Commentary

The yeast dynamin-like GTPase Vps1 mediates Atg9 transport to the phagophore assembly site in Saccharomyces cerevisiae

Yan Hu & Fulvio Reggiori

Article: 2247309

Published online: 17 Aug 2023

AbstractforThe yeast dynamin-like GTPase Vps1 mediates Atg9 transport to the phagophore assembly site in Saccharomyces cerevisiae | Full Text | References | PDF (209 KB) | EPUB

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Article Commentary

Multifaceted role of autophagy in regulating phosphate homeostasis and developmental root plasticity

Tzu-Yin Liu, Hui-Fang Lung, Chang-Yi Chiu & Hong-Xuan Chow

Article: 2247736

Published online: 17 Aug 2023

AbstractforMultifaceted role of autophagy in regulating phosphate homeostasis and developmental root plasticity | Full Text | References | PDF (772.9 KB) | EPUB

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Article Commentary

Discovery of autophagy as a universal mechanism for sex steroid synthesis in human ovary and testis

Yashar Esmaeilian, Francesko Hela, Gamze Bildik, Ece İltumur, Sevgi Yusufoglu, Kayhan Yakin & Ozgur Oktem

Article: 2251804

Published online: 30 Aug 2023

AbstractforDiscovery of autophagy as a universal mechanism for sex steroid synthesis in human ovary and testis | Full Text | References | PDF (523.8 KB) | EPUB

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Research Paper

Article

Transcriptional pausing factor M1BP regulates cellular homeostasis by suppressing autophagy and apoptosis in Drosophila eye

Anuradha Venkatakrishnan Chimata, Hannah Darnell, Akanksha Raj, Madhuri Kango-Singh & Amit Singh

Article: 2252307

Published online: 05 Sep 2023

AbstractforTranscriptional pausing factor M1BP regulates cellular homeostasis by suppressing autophagy and apoptosis in Drosophila eye | Full Text | References | PDF (6.5 MB) | EPUB

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Autophagic Punctum

Article Commentary

INPP5D inhibits anti-malarial immunity by promoting IRF3 degradation through selective autophagy

Hongyu Li & Xiao Yu

Article: 2254614

Published online: 18 Sep 2023

AbstractforINPP5D inhibits anti-malarial immunity by promoting IRF3 degradation through selective autophagy | Full Text | References | PDF (258.1 KB) | EPUB

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Article Commentary

Targeting autophagy to treat HIV immune dysfunction

Wenli Mu, Heather Martin & Anjie Zhen

Article: 2254615

Published online: 11 Sep 2023

AbstractforTargeting autophagy to treat HIV immune dysfunction | Full Text | References | PDF (119.7 KB) | EPUB

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Research Paper

Article

Ouabain promotes claudin-1, -2, and -4 autophagic degradation through oxidative stress and AMPK activation in MDCK cells

Jessica P. Campos-Blázquez, Catalina Flores-Maldonado, Juan M. Gallardo, José Bonilla-Delgado, Alan A. Pedraza-Ramírez, Octavio López-Méndez, Enoc M. Cortés-Malagón & Rubén G. Contreras

Article: 2256146

Published online: 02 Oct 2023

AbstractforOuabain promotes claudin-1, -2, and -4 autophagic degradation through oxidative stress and AMPK activation in MDCK cells | Full Text | References | PDF (8.3 MB) | EPUB

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Article

Improved volume CLEM revealed that aberrant phagophores and RB1CC1/FIP200-containing clusters appear surround SQSTM1/p62 aggregates in Atg9a-deficient cells

Soichiro Kakuta, Junji Yamaguchi, Chigure Suzuki, Isei Tanida & Yasuo Uchiyama

Article: 2256599

Published online: 15 Sep 2023

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Autophagic Punctum

Article Commentary

Orchestration of autophagosome fusion by STRIPAK complex components in muscle tissue

Yungui Guo & Erika R. Geisbrecht

Article: 2260670

Published online: 27 Sep 2023

AbstractforOrchestration of autophagosome fusion by STRIPAK complex components in muscle tissue | Full Text | References | PDF (423.6 KB) | EPUB

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Article Commentary

MTFP1 is a mitophagy receptor that operates in PINK1/PRKN-dependent mitophagy and promotes oral cancer cell survival

Debasna P Panigrahi & Sujit K Bhutia

Article: 2267882

Published online: 16 Oct 2023

AbstractforMTFP1 is a mitophagy receptor that operates in PINK1/PRKN-dependent mitophagy and promotes oral cancer cell survival | Full Text | References | PDF (381.1 KB) | EPUB

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Article Commentary

AeiA, an Atg8-interacting protein in Aspergillus oryzae, promotes peroxisome degradation by pexophagy

Takashi Kikuma & Joichiro Nishio

Article: 2271281

Published online: 23 Oct 2023

AbstractforAeiA, an Atg8-interacting protein in Aspergillus oryzae, promotes peroxisome degradation by pexophagy | Full Text | References | PDF (407.7 KB) | EPUB

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Review

Review Article

Structural biology of the Atg8 and Atg12 conjugation systems

Nobuo N. Noda

Article: 2277582

Published online: 10 Nov 2023

AbstractforStructural biology of the Atg8 and Atg12 conjugation systems | Full Text | References | PDF (3.5 MB) | EPUB

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Research Paper

Article

MALT-1 shortens lifespan by inhibiting autophagy in the intestine of C. elegans

Julie Vérièpe-Salerno, Silvia Podavini, Marcus J.C. Long, Irina Kolotuev, Muriel Cuendet & Margot Thome

Article: 2277584

Published online: 09 Nov 2023

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Autophagic Punctum

Article Commentary

Autophagy in the endothelium commands flow-mediated vascular reactivity and remodelling, and regulates VEGFR2 subcellular localization and signalling

Pierre-Louis Tharaux & Olivia Lenoir

Article: 2277585

Published online: 13 Nov 2023

AbstractforAutophagy in the endothelium commands flow-mediated vascular reactivity and remodelling, and regulates VEGFR2 subcellular localization and signalling | Full Text | References | PDF (140.2 KB) | EPUB

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Article Commentary

TRIMming down Mycobacterium tuberculosis replication: TRIM32 is required for bacterial ubiquitination and autophagy induction in macrophages

Alessandra Romagnoli, Martina Di Rienzo, Mauro Piacentini & Gian Maria Fimia

Article: 2278120

Published online: 05 Nov 2023

AbstractforTRIMming down Mycobacterium tuberculosis replication: TRIM32 is required for bacterial ubiquitination and autophagy induction in macrophages | Full Text | References | PDF (487 KB) | EPUB

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Article Commentary

Dual function of the Leon/USP5 deubiquitinase in the ubiquitin-proteasome and autophagic pathways

Yuchieh Jay Lin & Guang-Chao Chen

Article: 2278299

Published online: 09 Nov 2023

AbstractforDual function of the Leon/USP5 deubiquitinase in the ubiquitin-proteasome and autophagic pathways | Full Text | References | PDF (421.9 KB) | EPUB

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Article Commentary

Relative dependence: Autophagy in the mother plant and the embryo contributes to Arabidopsis seed development

Ori Avraham Erlichman & Tamar Avin-Wittenberg

Article: 2278946

Published online: 14 Nov 2023

AbstractforRelative dependence: Autophagy in the mother plant and the embryo contributes to Arabidopsis seed development | Full Text | References | PDF (425 KB) | EPUB

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Article Commentary

Herpesvirus lytic infection-induced mitophagy via viral interferon regulatory factor 1

Mai Tram Vo & Young Bong Choi

Article: 2281135

Published online: 14 Nov 2023

AbstractforHerpesvirus lytic infection-induced mitophagy via viral interferon regulatory factor 1 | Full Text | References | PDF (344.8 KB) | EPUB

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Review

Topoisomerase I poisons-induced autophagy: Cytoprotective, Cytotoxic or Non-protective

Ahmed M. Elshazly, Polina A. Wright, Jingwen Xu & David A. Gewirtz

Pages: 1-16

Published online: 25 Dec 2022

AbstractforTopoisomerase I poisons-induced autophagy: Cytoprotective, Cytotoxic or Non-protective | Full Text | References | PDF (592.9 KB) | EPUB

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