Gut Microbes, Volume 15, Issue 1 (2023)

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Gut Microbes, Volume 15, Issue 1 (2023)

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Vol 16, 2024 Volume 15, 2023 Vol 14, 2022 Vol 13, 2021 Vol 12, 2020 Vol 11, 2020 Vol 10, 2019 Vol 9, 2018 Vol 8, 2017 Vol 7, 2016 Vol 6, 2015 Vol 5, 2014 Vol 4, 2013 Vol 3, 2012 Vol 2, 2011 Vol 1, 2010
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Research Paper

Article
Acute appendicitis manifests as two microbiome state types with oral pathogens influencing severity
Marcus Blohs, Alexander Mahnert, Kevin Brunnader, Christina Flucher, Christoph Castellani, Holger Till, Georg Singer & Christine Moissl-Eichinger
Article: 2145845
Published online: 23 Jan 2023
AbstractforAcute appendicitis manifests as two microbiome state types with oral pathogens influencing severity | Full Text | References | PDF (7.1 MB) | EPUB | Supplemental
  • 4017 Views
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Open Access
Article
Potential binding modes of the gut bacterial metabolite, 5-hydroxyindole, to the intestinal L-type calcium channels and its impact on the microbiota in rats
Barbora Waclawiková, Paulo Cesar Telles de Souza, Markus Schwalbe, Constantinos G. Neochoritis, Warner Hoornenborg, Sieger A. Nelemans, Siewert J. Marrink & Sahar El Aidy
Article: 2154544
Published online: 13 Dec 2022
AbstractforPotential binding modes of the gut bacterial metabolite, 5-hydroxyindole, to the intestinal L-type calcium channels and its impact on the microbiota in rats | Full Text | References | PDF (6.4 MB) | EPUB | Supplemental
  • 3712 Views
  • 3 CrossRef citations
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Open Access
Article
Integrative metagenomic and metabolomic analyses reveal gut microbiota-derived multiple hits connected to development of gestational diabetes mellitus in humans
Dewei Ye, Jiating Huang, Jiaming Wu, Kang Xie, Xiang Gao, Kaixuan Yan, Pengfei Zhang, Ying Tao, Yun Li, Shufei Zang, Xianglu Rong, Jun Li & Jiao Guo
Article: 2154552
Published online: 22 Dec 2022
AbstractforIntegrative metagenomic and metabolomic analyses reveal gut microbiota-derived multiple hits connected to development of gestational diabetes mellitus in humans | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 6169 Views
  • 7 CrossRef citations
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Open Access
Article
Alterations in gut microbiome and metabolomics in chronic hepatitis B infection-associated liver disease and their impact on peripheral immune response
Yue Shen, Sheng-Di Wu, Yao Chen, Xin-Yue Li, Qin Zhu, Kiyoko Nakayama, Wan-Qin Zhang, Cheng-Zhao Weng, Jun Zhang, Hai-Kun Wang, Jian Wu & Wei Jiang
Article: 2155018
Published online: 15 Dec 2022
AbstractforAlterations in gut microbiome and metabolomics in chronic hepatitis B infection-associated liver disease and their impact on peripheral immune response | Full Text | References | PDF (4.5 MB) | EPUB | Supplemental
  • 8621 Views
  • 13 CrossRef citations
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Open Access
Article
Technical versus biological variability in a synthetic human gut community
Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts & Karoline Faust
Article: 2155019
Published online: 29 Dec 2022
AbstractforTechnical versus biological variability in a synthetic human gut community | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 2907 Views
  • 1 CrossRef citations
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Open Access
Article
Diet and the gut-lung axis in cystic fibrosis – direct & indirect links
Isabelle McKay, Josie van Dorst, Tamarah Katz, Michael Doumit, Bernadette Prentice, Louisa Owens, Yvonne Belessis, Sandra Chuang, Adam Jaffe, Torsten Thomas, Michael Coffey & Chee Y. Ooi
Article: 2156254
Published online: 27 Dec 2022
AbstractforDiet and the gut-lung axis in cystic fibrosis – direct & indirect links | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 3421 Views
  • 5 CrossRef citations
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Open Access
Article
Intratumor microbiome features reveal antitumor potentials of intrahepatic cholangiocarcinoma
Xiaoqiang Chai, Jie Wang, Huanping Li, Chao Gao, Shuangqi Li, Chuanyuan Wei, Jianhang Huang, Yingming Tian, Jian Yuan, Jiacheng Lu, Dongmei Gao, Yimin Zheng, Cheng Huang, Jian Zhou, Guoming Shi, Aiwu Ke, Feng Liu, Jia Fan & Jiabin Cai
Article: 2156255
Published online: 23 Dec 2022
AbstractforIntratumor microbiome features reveal antitumor potentials of intrahepatic cholangiocarcinoma | Full Text | References | PDF (12.2 MB) | EPUB | Supplemental
  • 11169 Views
  • 18 CrossRef citations
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Open Access
Article
Exogenous antibiotic resistance gene contributes to intestinal inflammation by modulating the gut microbiome and inflammatory cytokine responses in mouse
Rong Tan, Min Jin, Zhengshan Chen, Yifan Shao, Yuanyuan Song, Jing Yin, Lifang Wang, Tianjiao Chen, Junwen Li & Dong Yang
Article: 2156764
Published online: 27 Dec 2022
AbstractforExogenous antibiotic resistance gene contributes to intestinal inflammation by modulating the gut microbiome and inflammatory cytokine responses in mouse | Full Text | References | PDF (17.3 MB) | EPUB | Supplemental
  • 3378 Views
  • 1 CrossRef citations
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Open Access
Article
Differential response to prolonged amoxicillin treatment: long-term resilience of the microbiome versus long-lasting perturbations in the gut resistome
Achal Dhariwal, Lars Christian Haugli Bråten, Kjersti Sturød, Gabriela Salvadori, Ahmed Bargheet, Heidi Åmdal, Roger Junges, Dag Berild, John-Anker Zwart, Kjersti Storheim & Fernanda Cristina Petersen
Article: 2157200
Published online: 28 Dec 2022
AbstractforDifferential response to prolonged amoxicillin treatment: long-term resilience of the microbiome versus long-lasting perturbations in the gut resistome | Full Text | References | PDF (5.6 MB) | EPUB | Supplemental
  • 3362 Views
  • 6 CrossRef citations
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Open Access
Article
Gut microbiome signatures reflect different subtypes of irritable bowel syndrome
Qi Su, Hein M Tun, Qin Liu, Yun Kit Yeoh, Joyce Wing Yan Mak, Francis KL Chan & Siew C Ng
Article: 2157697
Published online: 27 Dec 2022
AbstractforGut microbiome signatures reflect different subtypes of irritable bowel syndrome | Full Text | References | PDF (6.2 MB) | EPUB | Supplemental
  • 5577 Views
  • 13 CrossRef citations
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Open Access
Article
Non-caloric artificial sweeteners modulate conjugative transfer of multi-drug resistance plasmid in the gut microbiota
Zhigang Yu, Ian R. Henderson & Jianhua Guo
Article: 2157698
Published online: 16 Dec 2022
AbstractforNon-caloric artificial sweeteners modulate conjugative transfer of multi-drug resistance plasmid in the gut microbiota | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 5145 Views
  • 15 CrossRef citations
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Open Access

Review

Review
In vitro and ex vivo modeling of enteric bacterial infections
Nayere Taebnia, Ute Römling & Volker M. Lauschke
Article: 2158034
Published online: 28 Dec 2022
AbstractforIn vitro and ex vivo modeling of enteric bacterial infections | Full Text | References | PDF (2.2 MB) | EPUB
  • 5156 Views
  • 5 CrossRef citations
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Open Access

Research Paper

Article
Host metabolic benefits of prebiotic exopolysaccharides produced by Leuconostoc mesenteroides
Junki Miyamoto, Hidenori Shimizu, Keiko Hisa, Chiaki Matsuzaki, Shinsuke Inuki, Yuna Ando, Akari Nishida, Ayano Izumi, Mayu Yamano, Chihiro Ushiroda, Junichiro Irie, Takane Katayama, Hiroaki Ohno, Hiroshi Itoh, Kenji Yamamoto & Ikuo Kimura
Article: 2161271
Published online: 05 Jan 2023
AbstractforHost metabolic benefits of prebiotic exopolysaccharides produced by Leuconostoc mesenteroides | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 5212 Views
  • 14 CrossRef citations
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Open Access
Article
The gut-microbiota-brain axis in a Spanish population in the aftermath of the COVID-19 pandemic: microbiota composition linked to anxiety, trauma, and depression profiles
Stefanie Malan-Müller, Mireia Valles-Colomer, Tomás Palomo & Juan C. Leza
Article: 2162306
Published online: 18 Jan 2023
AbstractforThe gut-microbiota-brain axis in a Spanish population in the aftermath of the COVID-19 pandemic: microbiota composition linked to anxiety, trauma, and depression profiles | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 3987 Views
  • 10 CrossRef citations
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Open Access

Brief Report

Brief Report
An IBD-associated pathobiont synergises with NSAID to promote colitis which is blocked by NLRP3 inflammasome and Caspase-8 inhibitors
Raminder Singh, Valerio Rossini, Stephen R. Stockdale, Gonzalo Saiz-Gonzalo, Naomi Hanrahan, Tanya D’ Souza, Adam Clooney, Lorraine A. Draper, Colin Hill, Ken Nally, Fergus Shanahan, Stefan Andersson-Engels & Silvia Melgar
Article: 2163838
Published online: 19 Jan 2023
AbstractforAn IBD-associated pathobiont synergises with NSAID to promote colitis which is blocked by NLRP3 inflammasome and Caspase-8 inhibitors | Full Text | References | PDF (2.6 MB) | EPUB | Supplemental
  • 3185 Views
  • 3 CrossRef citations
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Open Access

Review

Review
Immune evasion and persistence in enteric bacterial pathogens
Micah J. Worley
Article: 2163839
Published online: 08 Jan 2023
AbstractforImmune evasion and persistence in enteric bacterial pathogens | Full Text | References | PDF (2.2 MB) | EPUB
  • 2931 Views
  • 5 CrossRef citations
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Open Access

Research Paper

Article
Pol32, an accessory subunit of DNA polymerase delta, plays an essential role in genome stability and pathogenesis of Candida albicans
Shraddheya Kumar Patel, Satya Ranjan Sahu, Bhabasha Gyanadeep Utkalaja, Swagata Bose & Narottam Acharya
Article: 2163840
Published online: 05 Jan 2023
AbstractforPol32, an accessory subunit of DNA polymerase delta, plays an essential role in genome stability and pathogenesis of Candida albicans | Full Text | References | PDF (9.1 MB) | EPUB | Supplemental
  • 1963 Views
  • 6 CrossRef citations
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Open Access
Article
Human milk oligosaccharides, antimicrobial drugs, and the gut microbiota of term neonates: observations from the KOALA birth cohort study
D.J.M Barnett, M.F Endika, C.E Klostermann, F Gu, C Thijs, A Nauta, H.A Schols, H Smidt, I.C.W Arts & J Penders
Article: 2164152
Published online: 08 Jan 2023
AbstractforHuman milk oligosaccharides, antimicrobial drugs, and the gut microbiota of term neonates: observations from the KOALA birth cohort study | Full Text | References | PDF (5.7 MB) | EPUB | Supplemental
  • 5302 Views
  • 9 CrossRef citations
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Open Access
Article
Pathometagenomics reveals susceptibility to intestinal infection by Morganella to be mediated by the blood group-related B4galnt2 gene in wild mice
Marie Vallier, Abdulhadi Suwandi, Katrin Ehrhardt, Meriem Belheouane, David Berry, Aleksa Čepić, Alibek Galeev, Jill M. Johnsen, Guntram A. Grassl & John F. Baines
Article: 2164448
Published online: 22 Jan 2023
AbstractforPathometagenomics reveals susceptibility to intestinal infection by Morganella to be mediated by the blood group-related B4galnt2 gene in wild mice | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1910 Views
  • 2 CrossRef citations
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Open Access
Article
Microbiome and spatially resolved metabolomics analysis reveal the anticancer role of gut Akkermansia muciniphila by crosstalk with intratumoral microbiota and reprogramming tumoral metabolism in mice
Zhuxian Zhu, Jixu Cai, Weiwei Hou, Ke Xu, Xuxiao Wu, Yuanlin Song, Chunxue Bai, Yin-Yuan Mo & Ziqiang Zhang
Article: 2166700
Published online: 05 Feb 2023
AbstractforMicrobiome and spatially resolved metabolomics analysis reveal the anticancer role of gut Akkermansia muciniphila by crosstalk with intratumoral microbiota and reprogramming tumoral metabolism in mice | Full Text | References | PDF (12 MB) | EPUB
  • 6979 Views
  • 11 CrossRef citations
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Open Access

Review

Review
Diet–microbial cross–talk underlying increased visceral perception
Giada De Palma, David E. Reed & Premysl Bercik
Article: 2166780
Published online: 19 Jan 2023
AbstractforDiet–microbial cross–talk underlying increased visceral perception | Full Text | References | PDF (918.2 KB) | EPUB
  • 2602 Views
  • 2 CrossRef citations
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Open Access

Research Paper

Article
Microbial changes from bariatric surgery alters glucose-dependent insulinotropic polypeptide and prevents fatty liver disease
Tien S. Dong, William Katzka, Julianne C. Yang, Candace Chang, Nerea Arias-Jayo, Venu Lagishetty, Anna Balioukova, Yijun Chen, Erik Dutson, Zhaoping Li, Emeran A. Mayer, Joseph R. Pisegna, Claudia Sanmiguel & Jonathan P. Jacobs
Article: 2167170
Published online: 02 Feb 2023
AbstractforMicrobial changes from bariatric surgery alters glucose-dependent insulinotropic polypeptide and prevents fatty liver disease | Full Text | References | PDF (5.9 MB) | EPUB | Supplemental
  • 2903 Views
  • 4 CrossRef citations
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Open Access

Review

Review
Candida albicans can foster gut dysbiosis and systemic inflammation during HIV infection
Silvere D Zaongo, Jing Ouyang, Stéphane Isnard, Xin Zhou, Vijay Harypursat, Hongjuan Cui, Jean-Pierre Routy & Yaokai Chen
Article: 2167171
Published online: 01 Feb 2023
AbstractforCandida albicans can foster gut dysbiosis and systemic inflammation during HIV infection | Full Text | References | PDF (1.4 MB) | EPUB
  • 2619 Views
  • 11 CrossRef citations
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Open Access

Research Paper

Article
Gut-derived β-amyloid: Likely a centerpiece of the gut–brain axis contributing to Alzheimer’s pathogenesis
Jinghua Jin, Zhi Xu, Lina Zhang, Can Zhang, Xiaoduo Zhao, Yuxuan Mao, Haojian Zhang, Xingguang Liang, Juanli Wu, Ying Yang & Jing Zhang
Article: 2167172
Published online: 22 Jan 2023
AbstractforGut-derived β-amyloid: Likely a centerpiece of the gut–brain axis contributing to Alzheimer’s pathogenesis | Full Text | References | PDF (6.2 MB) | EPUB | Supplemental
  • 7391 Views
  • 14 CrossRef citations
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Open Access
Article
Gut microbiota alteration after cholecystectomy contributes to post-cholecystectomy diarrhea via bile acids stimulating colonic serotonin
Yayun Xu, Jianfa Wang, Xubo Wu, Hui Jing, Shilong Zhang, Zhiqiu Hu, Longhua Rao, Qimeng Chang, Lishun Wang & Ziping Zhang
Article: 2168101
Published online: 02 Feb 2023
AbstractforGut microbiota alteration after cholecystectomy contributes to post-cholecystectomy diarrhea via bile acids stimulating colonic serotonin | Full Text | References | PDF (15.8 MB) | EPUB | Supplemental
  • 3340 Views
  • 9 CrossRef citations
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Open Access

Review

Review
Fungal feelings in the irritable bowel syndrome: the intestinal mycobiome and abdominal pain
Iam van Thiel, Wj de Jonge & Rm van den Wijngaard
Article: 2168992
Published online: 01 Feb 2023
AbstractforFungal feelings in the irritable bowel syndrome: the intestinal mycobiome and abdominal pain | Full Text | References | PDF (1.1 MB) | EPUB
  • 2979 Views
  • 5 CrossRef citations
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Open Access

Research Paper

Article
Neonatal necrotizing enterocolitis: Clostridium butyricum and Clostridium neonatale fermentation metabolism and enteropathogenicity
Laurent Ferraris, Aurélie Balvay, Deborah Bellet, Johanne Delannoy, Claire Maudet, Thibaut Larcher, Jean-Christophe Rozé, Catherine Philippe, Thierry Meylheuc, Marie-José Butel, Sylvie Rabot & Julio Aires
Article: 2172666
Published online: 21 Feb 2023
AbstractforNeonatal necrotizing enterocolitis: Clostridium butyricum and Clostridium neonatale fermentation metabolism and enteropathogenicity | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 1649 Views
  • 3 CrossRef citations
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Open Access

Review

Review
Mouse models for bacterial enteropathogen infections: insights into the role of colonization resistance
Mathias K.-M. Herzog, Monica Cazzaniga, Audrey Peters, Nizar Shayya, Luca Beldi, Siegfried Hapfelmeier, Markus M. Heimesaat, Stefan Bereswill, Gad Frankel, Cormac G.M. Gahan & Wolf-Dietrich Hardt
Article: 2172667
Published online: 16 Feb 2023
AbstractforMouse models for bacterial enteropathogen infections: insights into the role of colonization resistance | Full Text | References | PDF (2.3 MB) | EPUB
  • 3577 Views
  • 11 CrossRef citations
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Open Access

Research Paper

Article
Dysregulation of CD177+ neutrophils on intraepithelial lymphocytes exacerbates gut inflammation via decreasing microbiota-derived DMF
Huimin Chen, Xiaohan Wu, Ruicong Sun, Huiying Lu, Ritian Lin, Xiang Gao, Gengfeng Li, Zhongsheng Feng, Ruixin Zhu, Yao Yao, Baisui Feng & Zhanju Liu
Article: 2172668
Published online: 02 Feb 2023
AbstractforDysregulation of CD177+ neutrophils on intraepithelial lymphocytes exacerbates gut inflammation via decreasing microbiota-derived DMF | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 2985 Views
  • 3 CrossRef citations
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Open Access

Review

Review
The multifaceted virulence of adherent-invasive Escherichia coli
Sarah Mansour, Tahreem Asrar & Wael Elhenawy
Article: 2172669
Published online: 05 Feb 2023
AbstractforThe multifaceted virulence of adherent-invasive Escherichia coli | Full Text | References | PDF (711.4 KB) | EPUB
  • 3291 Views
  • 10 CrossRef citations
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Open Access

Research Paper

Article
Effect of food additives on key bacterial taxa and the mucosa-associated microbiota in Crohn’s disease. The ENIGMA study
J.J. Jimenez Loayza, S. Kang, L. Schooth, J. J. Teh, A. de Klerk, E. K. Noon, J. Zhang, J. Hu, A. L. Hamilton, A. Wilson-O’Brien, G. L. Trakman, W. Lin, J. Ching, L. Or, J.J.Y. Sung, J. Yu, S.C. Ng, M.A. Kamm & M. Morrison
Article: 2172670
Published online: 27 Feb 2023
AbstractforEffect of food additives on key bacterial taxa and the mucosa-associated microbiota in Crohn’s disease. The ENIGMA study | Full Text | References | PDF (4.6 MB) | EPUB
  • 3306 Views
  • 4 CrossRef citations
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Open Access

Review

Review
Bile acids as modulators of gut microbiota composition and function
Anaïs B. Larabi, Hugo L. P. Masson & Andreas J. Bäumler
Article: 2172671
Published online: 05 Feb 2023
AbstractforBile acids as modulators of gut microbiota composition and function | Full Text | References | PDF (7.5 MB) | EPUB
  • 5835 Views
  • 30 CrossRef citations
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Open Access

Research Paper

Article
Dynamic network modeling of gut microbiota during Alzheimer’s disease progression in mice
Yinhu Li, Yijing Chen, Yingying Fan, Yuewen Chen & Yu Chen
Article: 2172672
Published online: 01 Feb 2023
AbstractforDynamic network modeling of gut microbiota during Alzheimer’s disease progression in mice | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 2838 Views
  • 10 CrossRef citations
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Open Access
Article
Gluten-free diet affects fecal small non-coding RNA profiles and microbiome composition in celiac disease supporting a host-gut microbiota crosstalk
Antonio Francavilla, Giulio Ferrero, Barbara Pardini, Sonia Tarallo, Laura Zanatto, Gian Paolo Caviglia, Sabina Sieri, Sara Grioni, Giulia Francescato, Francesco Stalla, Cristina Guiotto, Lucia Crocella, Marco Astegiano, Mauro Bruno, Pier Luigi Calvo, Paolo Vineis, Davide Giuseppe Ribaldone & Alessio Naccarati
Article: 2172955
Published online: 07 Feb 2023
AbstractforGluten-free diet affects fecal small non-coding RNA profiles and microbiome composition in celiac disease supporting a host-gut microbiota crosstalk | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 2897 Views
  • 8 CrossRef citations
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Open Access
Article
Segmented filamentous bacteria impede rotavirus infection via retinoic acid receptor-mediated signaling
Vu L. Ngo, Zhenda Shi, Baoming Jiang & Andrew T. Gewirtz
Article: 2174407
Published online: 05 Feb 2023
AbstractforSegmented filamentous bacteria impede rotavirus infection via retinoic acid receptor-mediated signaling | Full Text | References | PDF (2.8 MB) | EPUB
  • 1698 Views
  • 3 CrossRef citations
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Open Access

Review

Review
The diagnostic and prognostic potential of gut bacteria in inflammatory bowel disease
Dickson Kofi Wiredu Ocansey, Sanhua Hang, Xinyi Yuan, Hua Qian, Mengjiao Zhou, Chinasa Valerie Olovo, Xu Zhang & Fei Mao
Article: 2176118
Published online: 16 Feb 2023
AbstractforThe diagnostic and prognostic potential of gut bacteria in inflammatory bowel disease | Full Text | References | PDF (5 MB) | EPUB
  • 3458 Views
  • 10 CrossRef citations
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Open Access

Research Paper

Article
Using fecal immmunochemical cartridges for gut microbiome analysis within a colorectal cancer screening program
Stefanie Brezina, Martin Borkovec, Andreas Baierl, Fabienne Bastian, Andreas Futschik, Nikolaus Gasche, Thomas Gruenberger, Michael Hallas, Christian Jannsen, Gernot Leeb, Rebecca Lutz, Barbara Sladek & Andrea Gsur
Article: 2176119
Published online: 16 Feb 2023
AbstractforUsing fecal immmunochemical cartridges for gut microbiome analysis within a colorectal cancer screening program | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 1649 Views
  • 2 CrossRef citations
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Open Access

Brief Report

Brief Report
Co-cultivation is a powerful approach to produce a robust functionally designed synthetic consortium as a live biotherapeutic product (LBP)
Fabienne Kurt, Gabriel E. Leventhal, Marianne Rebecca Spalinger, Laura Anthamatten, Philipp Rogalla von Bieberstein, Carmen Menzi, Markus Reichlin, Marco Meola, Florian Rosenthal, Gerhard Rogler, Christophe Lacroix & Tomas de Wouters
Article: 2177486
Published online: 16 Feb 2023
AbstractforCo-cultivation is a powerful approach to produce a robust functionally designed synthetic consortium as a live biotherapeutic product (LBP) | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 4201 Views
  • 4 CrossRef citations
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Open Access

Research Paper

Article
Multiomic spatial analysis reveals a distinct mucosa-associated virome
Austin Yan, James Butcher, Laetitia Schramm, David R. Mack & Alain Stintzi
Article: 2177488
Published online: 23 Feb 2023
AbstractforMultiomic spatial analysis reveals a distinct mucosa-associated virome | Full Text | References | PDF (11.6 MB) | EPUB | Supplemental
  • 2184 Views
  • 4 CrossRef citations
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Open Access
Article
Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides
Muriel Derrien, Nadja Mikulic, Mary A Uyoga, Empar Chenoll, Eric Climent, Adrian Howard-Varona, Suzane Nyilima, Nicole U Stoffel, Simon Karanja, Robert Kottler, Bernd Stahl, Michael B Zimmermann & Raphaëlle Bourdet-Sicard
Article: 2178793
Published online: 16 Feb 2023
AbstractforGut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides | Full Text | References | PDF (9 MB) | EPUB | Supplemental
  • 4850 Views
  • 6 CrossRef citations
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Open Access

Brief Report

Brief Report
Randomized controlled trial demonstrates response to a probiotic intervention for metabolic syndrome that may correspond to diet
Hannah C. Wastyk, Dalia Perelman, Madeline Topf, Gabriela K. Fragiadakis, Jennifer L. Robinson, Justin L. Sonnenburg, Christopher D. Gardner & Erica D. Sonnenburg
Article: 2178794
Published online: 19 Feb 2023
AbstractforRandomized controlled trial demonstrates response to a probiotic intervention for metabolic syndrome that may correspond to diet | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 6944 Views
  • 10 CrossRef citations
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Open Access

Research Paper

Article
Vibrio parahaemolyticus T6SS2 effector repertoires
Daniel Tchelet, Kinga Keppel, Eran Bosis & Dor Salomon
Article: 2178795
Published online: 19 Feb 2023
AbstractforVibrio parahaemolyticus T6SS2 effector repertoires | Full Text | References | PDF (3.2 MB) | EPUB | Supplemental
  • 1793 Views
  • 3 CrossRef citations
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Open Access
Article
Inulin increases the beneficial effects of rhubarb supplementation on high-fat high-sugar diet-induced metabolic disorders in mice: impact on energy expenditure, brown adipose tissue activity, and microbiota
Marion Régnier, Matthias Van Hul, Martin Roumain, Adrien Paquot, Alice de Wouters d’Oplinter, Francesco Suriano, Amandine Everard, Nathalie M. Delzenne, Giulio G. Muccioli & Patrice D. Cani
Article: 2178796
Published online: 20 Feb 2023
AbstractforInulin increases the beneficial effects of rhubarb supplementation on high-fat high-sugar diet-induced metabolic disorders in mice: impact on energy expenditure, brown adipose tissue activity, and microbiota | Full Text | References | PDF (4.1 MB) | EPUB | Supplemental
  • 3137 Views
  • 3 CrossRef citations
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Open Access

Review

Review
How longitudinal data can contribute to our understanding of host genetic effects on the gut microbiome
Laura Grieneisen, Ran Blekhman & Elizabeth Archie
Article: 2178797
Published online: 16 Feb 2023
AbstractforHow longitudinal data can contribute to our understanding of host genetic effects on the gut microbiome | Full Text | References | PDF (1 MB) | EPUB
  • 2528 Views
  • 1 CrossRef citations
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Open Access

Research Paper

Article
The waxy mutation in sorghum and other cereal grains reshapes the gut microbiome by reducing levels of multiple beneficial species
Qinnan Yang, Mallory Van Haute, Nate Korth, Scott Sattler, Devin Rose, Anthony Juritsch, Jing Shao, Kristin Beede, Robert Schmaltz, Jeff Price, John Toy, Amanda E. Ramer-Tait & Andrew K. Benson
Article: 2178799
Published online: 21 Feb 2023
AbstractforThe waxy mutation in sorghum and other cereal grains reshapes the gut microbiome by reducing levels of multiple beneficial species | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 3025 Views
  • 3 CrossRef citations
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Open Access
Article
Limosilactobacillus reuteri normalizes blood–brain barrier dysfunction and neurodevelopment deficits associated with prenatal exposure to lipopolysaccharide
Jing Lu, Xiaobing Fan, Lei Lu, Yueyue Yu, Erica Markiewicz, Jessica C. Little, Ashley M. Sidebottom & Erika C. Claud
Article: 2178800
Published online: 17 Feb 2023
AbstractforLimosilactobacillus reuteri normalizes blood–brain barrier dysfunction and neurodevelopment deficits associated with prenatal exposure to lipopolysaccharide | Full Text | References | PDF (8.5 MB) | EPUB | Supplemental
  • 3207 Views
  • 9 CrossRef citations
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Open Access
Article
The fecal microbiotas of women of Pacific and New Zealand European ethnicities are characterized by distinctive enterotypes that reflect dietary intakes and fecal water content
Nikki Renall, Blair Lawley, Tommi Vatanen, Benedikt Merz, Jeroen Douwes, Marine Corbin, Lisa Te Morenga, Rozanne Kruger, Bernhard H Breier & Gerald W Tannock
Article: 2178801
Published online: 17 Feb 2023
AbstractforThe fecal microbiotas of women of Pacific and New Zealand European ethnicities are characterized by distinctive enterotypes that reflect dietary intakes and fecal water content | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 2444 Views
  • 1 CrossRef citations
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Open Access

Review

Review
Allogeneic hematopoietic cell transplantation, the microbiome, and graft-versus-host disease
Yannouck F. van Lier, Jaël Vos, Bianca Blom & Mette D. Hazenberg
Article: 2178805
Published online: 15 Feb 2023
AbstractforAllogeneic hematopoietic cell transplantation, the microbiome, and graft-versus-host disease | Full Text | References | PDF (1.4 MB) | EPUB
  • 4604 Views
  • 7 CrossRef citations
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Open Access

Research Paper

Article
Salmonella effector SopF regulates PANoptosis of intestinal epithelial cells to aggravate systemic infection
Haibo Yuan, Liting Zhou, Yilin Chen, Jiayi You, Hongye Hu, Yuanyuan Li, Rui Huang & Shuyan Wu
Article: 2180315
Published online: 20 Feb 2023
AbstractforSalmonella effector SopF regulates PANoptosis of intestinal epithelial cells to aggravate systemic infection | Full Text | References | PDF (7.7 MB) | EPUB | Supplemental
  • 3267 Views
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Article
Gut microbiome composition is associated with long-term disability worsening in multiple sclerosis
Lindsay Devolder, Ayla Pauwels, Ann Van Remoortel, Gwen Falony, Sara Vieira-Silva, Guy Nagels, Jacques De Keyser, Jeroen Raes & Marie B. D’Hooghe
Article: 2180316
Published online: 19 Feb 2023
AbstractforGut microbiome composition is associated with long-term disability worsening in multiple sclerosis | Full Text | References | PDF (2.2 MB) | EPUB | Supplemental
  • 2679 Views
  • 3 CrossRef citations
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Article
Actively replicating gut bacteria identified by 5-ethynyl-2’-deoxyuridine (EdU) click chemistry and cell sorting
Eve T. Beauchemin, Claire Hunter & Corinne F. Maurice
Article: 2180317
Published online: 23 Feb 2023
AbstractforActively replicating gut bacteria identified by 5-ethynyl-2’-deoxyuridine (EdU) click chemistry and cell sorting | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 1844 Views
  • 1 CrossRef citations
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Review

Review
The emerging roles of bacterial proteases in intestinal diseases
Alberto Caminero, Mabel Guzman, Josie Libertucci & Alan E. Lomax
Article: 2181922
Published online: 26 Feb 2023
AbstractforThe emerging roles of bacterial proteases in intestinal diseases | Full Text | References | PDF (1.4 MB) | EPUB
  • 4050 Views
  • 12 CrossRef citations
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Brief Report

Brief Report
Intestinal group 1 innate lymphoid cells drive macrophage-induced inflammation and endocrine defects in obesity and promote insulinemia
Rebeca Liébana-García, Marta Olivares, Carlos Francés-Cuesta, Teresa Rubio, Valerio Rossini, Guillermo Quintas & Yolanda Sanz
Article: 2181928
Published online: 23 Feb 2023
AbstractforIntestinal group 1 innate lymphoid cells drive macrophage-induced inflammation and endocrine defects in obesity and promote insulinemia | Full Text | References | PDF (3.4 MB) | EPUB | Supplemental
  • 1866 Views
  • 2 CrossRef citations
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Review

Review
Cholestasis: exploring the triangular relationship of gut microbiota-bile acid-cholestasis and the potential probiotic strategies
Leilei Yu, Yaru Liu, Shunhe Wang, Qingsong Zhang, Jianxin Zhao, Hao Zhang, Arjan Narbad, Fengwei Tian, Qixiao Zhai & Wei Chen
Article: 2181930
Published online: 02 Mar 2023
AbstractforCholestasis: exploring the triangular relationship of gut microbiota-bile acid-cholestasis and the potential probiotic strategies | Full Text | References | PDF (1.5 MB) | EPUB
  • 2950 Views
  • 11 CrossRef citations
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Research Paper

Article
Circulating androgen regulation by androgen-catabolizing gut bacteria in male mouse gut
Tsun-Hsien Hsiao, Chia-Hong Chou, Yi-Lung Chen, Po-Hsiang Wang, Guo-Jie Brandon-Mong, Tzong-Huei Lee, Tien-Yu Wu, Po-Ting Li, Chen-Wei Li, Yi-Li Lai, Yu-Lin Tseng, Chao-Jen Shih, Po-Hao Chen, Mei-Jou Chen & Yin-Ru Chiang
Article: 2183685
Published online: 26 Feb 2023
AbstractforCirculating androgen regulation by androgen-catabolizing gut bacteria in male mouse gut | Full Text | References | PDF (5.5 MB) | EPUB | Supplemental
  • 3578 Views
  • 5 CrossRef citations
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Article
Secreted Aeromonas GlcNAc binding protein GbpA stimulates epithelial cell proliferation in the zebrafish intestine
Allison V. Banse, Stephanie VanBeuge, T. Jarrod Smith, Savannah L. Logan & Karen Guillemin
Article: 2183686
Published online: 01 Mar 2023
AbstractforSecreted Aeromonas GlcNAc binding protein GbpA stimulates epithelial cell proliferation in the zebrafish intestine | Full Text | References | PDF (1.7 MB) | EPUB | Supplemental
  • 1451 Views
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Review

Review
Methodological challenges in neonatal microbiome research
Jonathan A Chapman & Christopher J Stewart
Article: 2183687
Published online: 26 Feb 2023
AbstractforMethodological challenges in neonatal microbiome research | Full Text | References | PDF (1.1 MB) | EPUB
  • 1874 Views
  • 0 CrossRef citations
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Research Paper

Article
Cholestasis impairs gut microbiota development and bile salt hydrolase activity in preterm neonates
Lauren E. Lynch, Amy B. Hair, Krishnakant G. Soni, Heeju Yang, Laura A. Gollins, Monica Narvaez-Rivas, Kenneth D. R. Setchell & Geoffrey A. Preidis
Article: 2183690
Published online: 26 Feb 2023
AbstractforCholestasis impairs gut microbiota development and bile salt hydrolase activity in preterm neonates | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
  • 2461 Views
  • 1 CrossRef citations
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Review

Review
Intestinal bacteria and colorectal cancer: etiology and treatment
Michael W. Dougherty & Christian Jobin
Article: 2185028
Published online: 16 Mar 2023
AbstractforIntestinal bacteria and colorectal cancer: etiology and treatment | Full Text | References | PDF (5.6 MB) | EPUB
  • 6586 Views
  • 12 CrossRef citations
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Brief Report

Brief Report
Cecum axis (CecAx) preservation reveals physiological and pathological gradients in mouse gastrointestinal epithelium
Hannah M. Lunnemann, Nicolas G. Shealy, Michelle L. Reyzer, John A. Shupe, Emily H. Green, Uswah Siddiqi, D. Borden Lacy, Mariana X. Byndloss & Nicholas O. Markham
Article: 2185029
Published online: 05 Mar 2023
AbstractforCecum axis (CecAx) preservation reveals physiological and pathological gradients in mouse gastrointestinal epithelium | Full Text | References | PDF (3.9 MB) | EPUB | Supplemental
  • 1515 Views
  • 2 CrossRef citations
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Brief Report
Bacterial flagellin is a dominant, stable innate immune activator in the gastrointestinal contents of mice and rats
Matam Vijay-Kumar, Venugopal R. Bovilla, Beng San Yeoh, Rachel M. Golonka, Piu Saha, Bina Joe & Andrew T. Gewirtz
Article: 2185031
Published online: 07 Mar 2023
AbstractforBacterial flagellin is a dominant, stable innate immune activator in the gastrointestinal contents of mice and rats | Full Text | References | PDF (434.7 KB) | EPUB | Supplemental
  • 1634 Views
  • 3 CrossRef citations
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Review

Review
Emerging issues in probiotic safety: 2023 perspectives
Daniel Merenstein, Bruno Pot, Gregory Leyer, Arthur C. Ouwehand, Geoffrey A. Preidis, Christopher A. Elkins, Colin Hill, Zachery T. Lewis, Andi L. Shane, Niv Zmora, Mariya I. Petrova, Maria Carmen Collado, Lorenzo Morelli, Gina A. Montoya, Hania Szajewska, Daniel J. Tancredi & Mary Ellen Sanders
Article: 2185034
Published online: 15 Mar 2023
AbstractforEmerging issues in probiotic safety: 2023 perspectives | Full Text | References | PDF (1.4 MB) | EPUB
  • 19449 Views
  • 46 CrossRef citations
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Review
The role of the sex hormone-gut microbiome axis in tumor immunotherapy
Luoyang Wang, Lei Tang, Dongchang Zhai, Meiying Song, Wei Li, Shuo Xu, Suli Jiang, Haining Meng, Jie Liang, Yingying Wang & Bei Zhang
Article: 2185035
Published online: 07 Mar 2023
AbstractforThe role of the sex hormone-gut microbiome axis in tumor immunotherapy | Full Text | References | PDF (1.7 MB) | EPUB
  • 2340 Views
  • 7 CrossRef citations
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Review
Efficacy of Bifidobacterium longum alone or in multi-strain probiotic formulations during early life and beyond
Susan Mills, Bo Yang, Graeme J. Smith, Catherine Stanton & R. Paul Ross
Article: 2186098
Published online: 10 Mar 2023
AbstractforEfficacy of Bifidobacterium longum alone or in multi-strain probiotic formulations during early life and beyond | Full Text | References | PDF (1.5 MB) | EPUB
  • 5762 Views
  • 6 CrossRef citations
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Brief Report

Brief Report
A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection
Thomas Däullary, Fabian Imdahl, Oliver Dietrich, Laura Hepp, Tobias Krammer, Christina Fey, Winfried Neuhaus, Marco Metzger, Jörg Vogel, Alexander J. Westermann, Antoine-Emmanuel Saliba & Daniela Zdzieblo
Article: 2186109
Published online: 20 Mar 2023
AbstractforA primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection | Full Text | References | PDF (18.2 MB) | EPUB | Supplemental
  • 2169 Views
  • 2 CrossRef citations
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Research Paper

Article
Therapeutic potential of Clostridium butyricum anticancer effects in colorectal cancer
Hui Xu, Haidan Luo, Jiayu Zhang, Kai Li & Mong-Hong Lee
Article: 2186114
Published online: 20 Mar 2023
AbstractforTherapeutic potential of Clostridium butyricum anticancer effects in colorectal cancer | Full Text | References | PDF (33.5 MB) | EPUB | Supplemental
  • 4362 Views
  • 11 CrossRef citations
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Article
Functional effects of human milk oligosaccharides (HMOs)
Meltem Dinleyici, Jana Barbieur, Ener Cagri Dinleyici & Yvan Vandenplas
Article: 2186115
Published online: 17 Mar 2023
AbstractforFunctional effects of human milk oligosaccharides (HMOs) | Full Text | References | PDF (2.2 MB) | EPUB
  • 8804 Views
  • 18 CrossRef citations
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Review

Review
Microbiota-directed biotherapeutics: considerations for quality and functional assessment
Emily Ef Fekete, Daniel Figeys & Xu Zhang
Article: 2186671
Published online: 10 Mar 2023
AbstractforMicrobiota-directed biotherapeutics: considerations for quality and functional assessment | Full Text | References | PDF (1.2 MB) | EPUB
  • 3633 Views
  • 3 CrossRef citations
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Research Paper

Article
Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America
Anthony Mannion, Alexander Sheh, Zeli Shen, JoAnn Dzink-Fox, M. Blanca Piazuelo, Keith T Wilson, Richard Peek & James G. Fox
Article: 2186677
Published online: 12 Mar 2023
AbstractforShotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America | Full Text | References | PDF (12.7 MB) | EPUB | Supplemental
  • 3005 Views
  • 5 CrossRef citations
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Article
Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL)
Brandilyn A. Peters, Qibin Qi, Mykhaylo Usyk, Martha L. Daviglus, Jianwen Cai, Nora Franceschini, James P. Lash, Marc D. Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D. Burk & Robert C. Kaplan
Article: 2186685
Published online: 07 Mar 2023
AbstractforAssociation of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) | Full Text | References | PDF (9.4 MB) | EPUB | Supplemental
  • 2400 Views
  • 3 CrossRef citations
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Article
Vitamin D influences gut microbiota and acetate production in zebrafish (Danio rerio) to promote intestinal immunity against invading pathogens
Xinmeng Liao, Yawen Lan, Wentao Wang, Jinjin Zhang, Rui Shao, Zhan Yin, Gudmundur H. Gudmundsson, Peter Bergman, Kangsen Mai, Qinghui Ai & Min Wan
Article: 2187575
Published online: 06 Mar 2023
AbstractforVitamin D influences gut microbiota and acetate production in zebrafish (Danio rerio) to promote intestinal immunity against invading pathogens | Full Text | References | PDF (9.5 MB) | EPUB | Supplemental
  • 3152 Views
  • 9 CrossRef citations
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Review

Review
Gut microbiota: a non-target victim of pesticide-induced toxicity
Tusha Sharma, Nagabhishek Sirpu Natesh, Ramesh Pothuraju, Surinder K. Batra & Satyanarayana Rachagani
Article: 2187578
Published online: 15 Mar 2023
AbstractforGut microbiota: a non-target victim of pesticide-induced toxicity | Full Text | References | PDF (2.5 MB) | EPUB
  • 2434 Views
  • 8 CrossRef citations
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Research Paper

Article
Spatial variation of the gut microbiome in response to long-term metformin treatment in high-fat diet-induced type 2 diabetes mouse model of both sexes
Laila Silamiķele, Rihards Saksis, Ivars Silamiķelis, Patrīcija Paulīne Kotoviča, Monta Brīvība, Ineta Kalniņa, Zane Kalniņa, Dāvids Fridmanis & Jānis Kloviņš
Article: 2188663
Published online: 16 Mar 2023
AbstractforSpatial variation of the gut microbiome in response to long-term metformin treatment in high-fat diet-induced type 2 diabetes mouse model of both sexes | Full Text | References | PDF (9.8 MB) | EPUB | Supplemental
  • 2457 Views
  • 3 CrossRef citations
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Article
Assembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta)
Shengzhi Yang, Zhenxin Fan, Jiawei Li, Xinqi Wang, Yue Lan, Bisong Yue, Miao He, Anyun Zhang & Jing Li
Article: 2188848
Published online: 15 Mar 2023
AbstractforAssembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta) | Full Text | References | PDF (7.7 MB) | EPUB | Supplemental
  • 2481 Views
  • 5 CrossRef citations
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Article
Gut microbiota modulates visceral sensitivity through calcitonin gene-related peptide (CGRP) production
Julien Pujo, Giada De Palma, Jun Lu, Heather J. Galipeau, Michael G. Surette, Stephen M. Collins & Premysl Bercik
Article: 2188874
Published online: 20 Mar 2023
AbstractforGut microbiota modulates visceral sensitivity through calcitonin gene-related peptide (CGRP) production | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 2697 Views
  • 5 CrossRef citations
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Review

Review
Succinate metabolism and its regulation of host-microbe interactions
Yi-han Wei, Xi Ma, Jiang-chao Zhao, Xiu-qi Wang & Chun-qi Gao
Article: 2190300
Published online: 22 Mar 2023
AbstractforSuccinate metabolism and its regulation of host-microbe interactions | Full Text | References | PDF (2.4 MB) | EPUB
  • 4837 Views
  • 13 CrossRef citations
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Research Paper

Article
A systematic review of associations between gut microbiota composition and growth failure in preterm neonates
Larissa L. Neves, Amy B. Hair & Geoffrey A. Preidis
Article: 2190301
Published online: 16 Mar 2023
AbstractforA systematic review of associations between gut microbiota composition and growth failure in preterm neonates | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 1736 Views
  • 1 CrossRef citations
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Article
Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses
Stefanie L. Vogt, Antonio Serapio-Palacios, Sarah E. Woodward, Andrew S. Santos, Stefan P.W. de Vries, Michelle C. Daigneault, Lisa V. Brandmeier, Andrew J. Grant, Duncan J. Maskell, Emma Allen-Vercoe & B. Brett Finlay
Article: 2190303
Published online: 23 Mar 2023
AbstractforEnterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 2309 Views
  • 1 CrossRef citations
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Article
Lactobacillus rhamnosus GG ameliorates osteoporosis in ovariectomized rats by regulating the Th17/Treg balance and gut microbiota structure
Mengyu Guo, Huanjin Liu, Yinting Yu, Xingyu Zhu, Hui Xie, Chenxu Wei, Chunmei Mei, Yun Shi, Nong Zhou, Kunming Qin & Weidong Li
Article: 2190304
Published online: 20 Mar 2023
AbstractforLactobacillus rhamnosus GG ameliorates osteoporosis in ovariectomized rats by regulating the Th17/Treg balance and gut microbiota structure | Full Text | References | PDF (6 MB) | EPUB | Supplemental
Graphical summary. LGG alleviates osteoporosis in ovariectomized rats by modulating the gut microbiome and intestinal barrier and improving Th17/Treg balance in gut- bone.
  • 6564 Views
  • 17 CrossRef citations
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Review

Review
Comparing early life nutritional sources and human milk feeding practices: personalized and dynamic nutrition supports infant gut microbiome development and immune system maturation
Spencer R. Ames, Larisa C. Lotoski & Meghan B. Azad
Article: 2190305
Published online: 13 Apr 2023
AbstractforComparing early life nutritional sources and human milk feeding practices: personalized and dynamic nutrition supports infant gut microbiome development and immune system maturation | Full Text | References | PDF (2.2 MB) | EPUB
  • 7324 Views
  • 12 CrossRef citations
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Brief Report

Brief Report
Shorter sleep time relates to lower human defensin 5 secretion and compositional disturbance of the intestinal microbiota accompanied by decreased short-chain fatty acid production
Yu Shimizu, Ryodai Yamamura, Yuki Yokoi, Tokiyoshi Ayabe, Shigekazu Ukawa, Koshi Nakamura, Emiko Okada, Akihiro Imae, Takafumi Nakagawa, Akiko Tamakoshi & Kiminori Nakamura
Article: 2190306
Published online: 21 Mar 2023
AbstractforShorter sleep time relates to lower human defensin 5 secretion and compositional disturbance of the intestinal microbiota accompanied by decreased short-chain fatty acid production | Full Text | References | PDF (2.3 MB) | EPUB
  • 4827 Views
  • 4 CrossRef citations
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Research Paper

Article
E. coli Common pili promote the fitness and virulence of a hybrid aEPEC/ExPEC strain within diverse host environments
Danielle D. Munhoz, Amanda C. Richards, Fernanda F. Santos, Matthew A. Mulvey & Roxane M. F Piazza
Article: 2190308
Published online: 22 Mar 2023
AbstractforE. coli Common pili promote the fitness and virulence of a hybrid aEPEC/ExPEC strain within diverse host environments | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 1366 Views
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Article
GPR120 promotes neutrophil control of intestinal bacterial infection
Zheng Zhou, Wenjing Yang, Tianming Yu, Yu Yu, Xiaojing Zhao, Yanbo Yu, Chuncai Gu, Anthony J Bilotta, Suxia Yao, Qihong Zhao, George Golovko, Mingsong Li & Yingzi Cong
Article: 2190311
Published online: 16 Mar 2023
AbstractforGPR120 promotes neutrophil control of intestinal bacterial infection | Full Text | References | PDF (1.8 MB) | EPUB | Supplemental
  • 2577 Views
  • 2 CrossRef citations
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Open Access

Review

Review
Microbial metabolites as modulators of the infant gut microbiome and host-microbial interactions in early life
Henrik M. Roager, Catherine Stanton & Lindsay J. Hall
Article: 2192151
Published online: 21 Mar 2023
AbstractforMicrobial metabolites as modulators of the infant gut microbiome and host-microbial interactions in early life | Full Text | References | PDF (3.8 MB) | EPUB
  • 6469 Views
  • 15 CrossRef citations
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Research Paper

Article
Glycoursodeoxycholic acid regulates bile acids level and alters gut microbiota and glycolipid metabolism to attenuate diabetes
Bingting Chen, Yu Bai, Fenglian Tong, Junlin Yan, Rui Zhang, Yewei Zhong, Huiwen Tan & Xiaoli Ma
Article: 2192155
Published online: 26 Mar 2023
AbstractforGlycoursodeoxycholic acid regulates bile acids level and alters gut microbiota and glycolipid metabolism to attenuate diabetes | Full Text | References | PDF (4.9 MB) | EPUB | Supplemental
  • 3620 Views
  • 8 CrossRef citations
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Review

Review
Translating neonatal microbiome science into commercial innovation: metabolism of human milk oligosaccharides as a basis for probiotic efficacy in breast-fed infants
David A. Mills, J. Bruce German, Carlito B. Lebrilla & Mark A. Underwood
Article: 2192458
Published online: 03 Apr 2023
AbstractforTranslating neonatal microbiome science into commercial innovation: metabolism of human milk oligosaccharides as a basis for probiotic efficacy in breast-fed infants | Full Text | References | PDF (3.8 MB) | EPUB
  • 4426 Views
  • 8 CrossRef citations
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Research Paper

Article
Clostridioides difficile aggravates dextran sulfate solution (DSS)-induced colitis by shaping the gut microbiota and promoting neutrophil recruitment
Danfeng Dong, Tongxuan Su, Wei Chen, Daosheng Wang, YiLun Xue, Qiuya Lu, Cen Jiang, Qi Ni, Enqiang Mao & Yibing Peng
Article: 2192478
Published online: 23 Mar 2023
AbstractforClostridioides difficile aggravates dextran sulfate solution (DSS)-induced colitis by shaping the gut microbiota and promoting neutrophil recruitment | Full Text | References | PDF (5.2 MB) | EPUB | Supplemental
  • 2938 Views
  • 2 CrossRef citations
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Article
YAP and β-catenin cooperate to drive H. pylori-induced gastric tumorigenesis
Nianshuang Li, Xinbo Xu, Yuan Zhan, Xiao Fei, Yaobin Ouyang, Pan Zheng, Yanan Zhou, Cong He, Chuan Xie, Yi Hu, Junbo Hong, Nonghua Lu, Zhongming Ge & Yin Zhu
Article: 2192501
Published online: 23 Mar 2023
AbstractforYAP and β-catenin cooperate to drive H. pylori-induced gastric tumorigenesis | Full Text | References | PDF (11.4 MB) | EPUB | Supplemental
  • 2552 Views
  • 9 CrossRef citations
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Open Access

Brief Report

Brief Report
ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis
Jinlong Ru, Mohammadali Khan Mirzaei, Jinling Xue, Xue Peng & Li Deng
Article: 2192522
Published online: 30 Mar 2023
AbstractforViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis | Full Text | References | PDF (1.9 MB) | EPUB | Supplemental
  • 4233 Views
  • 8 CrossRef citations
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Open Access

Research Paper

Article
Bifidobacterium longum subsp. infantis utilizes human milk urea to recycle nitrogen within the infant gut microbiome
Xiaomeng You, Asha Rani, Ezgi Özcan, Yang Lyu & David A. Sela
Article: 2192546
Published online: 26 Mar 2023
AbstractforBifidobacterium longum subsp. infantis utilizes human milk urea to recycle nitrogen within the infant gut microbiome | Full Text | References | PDF (4.8 MB) | EPUB | Supplemental
  • 3749 Views
  • 3 CrossRef citations
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Open Access
Article
Experimental diets dictate the metabolic benefits of probiotics in obesity
Ida Søgaard Larsen, Béatrice S.-Y. Choi, Bandik Föh, Nanna Ny Kristensen, Adia Ouellette, Rune Falkenberg Haller, Peter Bjarke Olsen, Delphine Saulnier, Christian Sina, Benjamin A. H. Jensen & André Marette
Article: 2192547
Published online: 21 Mar 2023
AbstractforExperimental diets dictate the metabolic benefits of probiotics in obesity | Full Text | References | PDF (12.8 MB) | EPUB | Supplemental
  • 4119 Views
  • 7 CrossRef citations
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Open Access
Article
Epithelial talin-1 protects mice from Citrobacter rodentium-induced colitis by restricting bacterial crypt intrusion and enhancing T cell immunity
Yvonne L. Latour, Margaret M. Allaman, Daniel P. Barry, Thaddeus M. Smith, Kamery J. Williams, Kara M. McNamara, Justin Jacobse, Jeremy A. Goettel, Alberto G. Delgado, M. Blanca Piazuelo, Shilin Zhao, Alain P. Gobert & Keith T. Wilson
Article: 2192623
Published online: 23 Mar 2023
AbstractforEpithelial talin-1 protects mice from Citrobacter rodentium-induced colitis by restricting bacterial crypt intrusion and enhancing T cell immunity | Full Text | References | PDF (10.8 MB) | EPUB
  • 1809 Views
  • 1 CrossRef citations
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Article
Crohn’s disease-associated AIEC inhibiting intestinal epithelial cell-derived exosomal let-7b expression regulates macrophage polarization to exacerbate intestinal fibrosis
Yihan Xu, Wenwei Qian, Liangyu Huang, Weiwei Wen, Yi Li, Feilong Guo, Zhenxing Zhu, Zhun Li, Jianfeng Gong, Zeqian Yu, Yan Zhou, Nan Lu, Weiming Zhu & Zhen Guo
Article: 2193115
Published online: 21 Mar 2023
AbstractforCrohn’s disease-associated AIEC inhibiting intestinal epithelial cell-derived exosomal let-7b expression regulates macrophage polarization to exacerbate intestinal fibrosis | Full Text | References | PDF (5.3 MB) | EPUB | Supplemental
  • 2399 Views
  • 5 CrossRef citations
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Article
Temperate bacteriophages infecting the mucin-degrading bacterium Ruminococcus gnavus from the human gut
Colin Buttimer, Ekaterina V. Khokhlova, Lisa Stein, Cara M. Hueston, Bianca Govi, Lorraine A. Draper, R. Paul Ross, Andrey N. Shkoporov & Colin Hill
Article: 2194794
Published online: 30 Mar 2023
AbstractforTemperate bacteriophages infecting the mucin-degrading bacterium Ruminococcus gnavus from the human gut | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 3044 Views
  • 2 CrossRef citations
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Review

Review
Maternal-infant antibiotic resistance genes transference: what do we know?
Anna Samarra, Maria Esteban-Torres, Raul Cabrera-Rubio, Manuel Bernabeu, Silvia Arboleya, Miguel Gueimonde & Maria Carmen Collado
Article: 2194797
Published online: 05 Apr 2023
AbstractforMaternal-infant antibiotic resistance genes transference: what do we know? | Full Text | References | PDF (1.9 MB) | EPUB
  • 3360 Views
  • 9 CrossRef citations
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Review
Multi-omics for biomarker approaches in the diagnostic evaluation and management of abdominal pain and irritable bowel syndrome: what lies ahead
Andrea Shin & Purna C. Kashyap
Article: 2195792
Published online: 03 Apr 2023
AbstractforMulti-omics for biomarker approaches in the diagnostic evaluation and management of abdominal pain and irritable bowel syndrome: what lies ahead | Full Text | References | PDF (1.3 MB) | EPUB
  • 2991 Views
  • 3 CrossRef citations
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Review
Intestinal mucin-type O-glycans: the major players in the host-bacteria-rotavirus interactions
S.A. Raev, J.O. Amimo, L.J. Saif & A.N. Vlasova
Article: 2197833
Published online: 05 Apr 2023
AbstractforIntestinal mucin-type O-glycans: the major players in the host-bacteria-rotavirus interactions | Full Text | References | PDF (2 MB) | EPUB
  • 2124 Views
  • 3 CrossRef citations
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Research Paper

Article
Meta-analysis reveals Helicobacter pylori mutual exclusivity and reproducible gastric microbiome alterations during gastric carcinoma progression
Yan Li, Yichen Hu, Xiang Zhan, Ying Song, Meng Xu, Shijie Wang, Xiaochang Huang & Zhenjiang Zech Xu
Article: 2197835
Published online: 05 Apr 2023
AbstractforMeta-analysis reveals Helicobacter pylori mutual exclusivity and reproducible gastric microbiome alterations during gastric carcinoma progression | Full Text | References | PDF (3.8 MB) | EPUB | Supplemental
  • 2928 Views
  • 4 CrossRef citations
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Article
Fusobacterium nucleatum promotes esophageal squamous cell carcinoma progression and chemoresistance by enhancing the secretion of chemotherapy-induced senescence-associated secretory phenotype via activation of DNA damage response pathway
Jian-Wei Zhang, Dan Zhang, Hai-Sen Yin, Han Zhang, Kun-Qiao Hong, Jing-Ping Yuan & Bao-Ping Yu
Article: 2197836
Published online: 05 Apr 2023
AbstractforFusobacterium nucleatum promotes esophageal squamous cell carcinoma progression and chemoresistance by enhancing the secretion of chemotherapy-induced senescence-associated secretory phenotype via activation of DNA damage response pathway | Full Text | References | PDF (11.8 MB) | EPUB | Supplemental
  • 3227 Views
  • 6 CrossRef citations
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Article
Effects of dietary fibers or probiotics on functional constipation symptoms and roles of gut microbiota: a double-blinded randomized placebo trial
Hao Lai, Yunfeng Li, Yafang He, Fangyao Chen, Baibing Mi, Junqi Li, Jiawen Xie, Guoqing Ma, Jinzhao Yang, Kun Xu, Xia Liao, Yan Yin, Junrong Liang, Liyun Kong, Xinyan Wang, Zhongxia Li, Yuan Shen, Shaonong Dang, Lei Zhang, Qian Wu, Lingxia Zeng, Lin Shi, Xuguang Zhang, Tian Tian & Xin Liu
Article: 2197837
Published online: 20 Apr 2023
AbstractforEffects of dietary fibers or probiotics on functional constipation symptoms and roles of gut microbiota: a double-blinded randomized placebo trial | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 10174 Views
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Article
Delay in loop ileostomy reversal surgery does not impact upon post-operative clinical outcomes. Complications are associated with an increased loss of microflora in the defunctioned intestine
Emma L. Beamish, Judith Johnson, Barbara Shih, Rebecca Killick, Frank Dondelinger, Ciarra McGoran, Caitlan Brewster-Craig, Albert Davies, Arnab Bhowmick & Rachael J. Rigby
Article: 2199659
Published online: 13 Apr 2023
AbstractforDelay in loop ileostomy reversal surgery does not impact upon post-operative clinical outcomes. Complications are associated with an increased loss of microflora in the defunctioned intestine | Full Text | References | PDF (4.5 MB) | EPUB
  • 1585 Views
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Brief Report

Brief Report
Kinetic and mechanistic diversity of intestinal immune homeostasis characterized by rapid removal of gut bacteria
Da-Jung Jung, Ledia Gebremedhin, Byoungsook Goh, Ji-Sun Yoo, Francesca Gazzaniga, Dennis L. Kasper & Sungwhan F. Oh
Article: 2201154
Published online: 17 Apr 2023
AbstractforKinetic and mechanistic diversity of intestinal immune homeostasis characterized by rapid removal of gut bacteria | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 1775 Views
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Review

Review
The emerging role of the small intestinal microbiota in human health and disease
Renate A. A. A. Ruigrok, Rinse K. Weersma & Arnau Vich Vila
Article: 2201155
Published online: 19 Apr 2023
AbstractforThe emerging role of the small intestinal microbiota in human health and disease | Full Text | References | PDF (1.3 MB) | EPUB
  • 4887 Views
  • 7 CrossRef citations
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Review
Gut microbiome at the crossroad of genetic variants and behavior disorders
Lingsha Cheng, Haoqian Wu, Zhuo Chen, Haiping Hao & Xiao Zheng
Article: 2201156
Published online: 23 Apr 2023
AbstractforGut microbiome at the crossroad of genetic variants and behavior disorders | Full Text | References | PDF (1.3 MB) | EPUB
  • 2241 Views
  • 8 CrossRef citations
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Review
Gut microbiota in COVID-19: new insights from inside
Bingqian Zhou, Xiaoqi Pang, Jingyi Wu, Tianyu Liu, Bangmao Wang & Hailong Cao
Article: 2201157
Published online: 20 Apr 2023
AbstractforGut microbiota in COVID-19: new insights from inside | Full Text | References | PDF (968.7 KB) | EPUB
  • 3133 Views
  • 8 CrossRef citations
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Research Paper

Article
A distinct microbiota signature precedes the clinical diagnosis of hepatocellular carcinoma
Jinhuan Yang, Qikuan He, Fei Lu, Kaiwen Chen, ZhiHao Ni, Haoyue Wang, Chen Zhou, Yaosheng Zhang, Bo Chen, Zhiyuan Bo, Jialiang Li, Haitao Yu, Yi Wang & Gang Chen
Article: 2201159
Published online: 23 Apr 2023
AbstractforA distinct microbiota signature precedes the clinical diagnosis of hepatocellular carcinoma | Full Text | References | PDF (8.5 MB) | EPUB | Supplemental
  • 4047 Views
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Review

Review
Probiotics to improve the gut microbiome in premature infants: are we there yet?
Emily M. Mercer & Marie-Claire Arrieta
Article: 2201160
Published online: 30 Apr 2023
AbstractforProbiotics to improve the gut microbiome in premature infants: are we there yet? | Full Text | References | PDF (1.7 MB) | EPUB
  • 3978 Views
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Research Paper

Article
Intestinal vitamin D receptor protects against extraintestinal breast cancer tumorigenesis
Yong-Guo Zhang, Yinglin Xia, Jilei Zhang, Shreya Deb, Shari Garrett & Jun Sun
Article: 2202593
Published online: 19 Apr 2023
AbstractforIntestinal vitamin D receptor protects against extraintestinal breast cancer tumorigenesis | Full Text | References | PDF (7.4 MB) | EPUB | Supplemental
  • 2231 Views
  • 2 CrossRef citations
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Article
Diverse but desolate landscape of gut microbial azoreductases: A rationale for idiopathic IBD drug response
Joshua B. Simpson, Josh J. Sekela, Benjamin S. Carry, Violet Beaty, Shakshi Patel & Matthew. R. Redinbo
Article: 2203963
Published online: 25 Apr 2023
AbstractforDiverse but desolate landscape of gut microbial azoreductases: A rationale for idiopathic IBD drug response | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
  • 1793 Views
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Review

Review
Microbial metabolites in colorectal tumorigenesis and cancer therapy
Yali Liu, Harry Cheuk-Hay Lau & Jun Yu
Article: 2203968
Published online: 24 Apr 2023
AbstractforMicrobial metabolites in colorectal tumorigenesis and cancer therapy | Full Text | References | PDF (1.6 MB) | EPUB
  • 3505 Views
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Research Paper

Article
Epidemiological and microbiome associations of Clostridioides difficile carriage in infancy and early childhood
Jyoti Mani, Shira Levy, Angelina Angelova, Sahel Hazrati, Ryan Fassnacht, Poorani Subramanian, Tiana Richards, John E. Niederhuber, George L. Maxwell & Suchitra K. Hourigan
Article: 2203969
Published online: 25 Apr 2023
AbstractforEpidemiological and microbiome associations of Clostridioides difficile carriage in infancy and early childhood | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 1771 Views
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Article
Performance of Gut Microbiome as an Independent Diagnostic Tool for 20 Diseases: Cross-Cohort Validation of Machine-Learning Classifiers
Min Li, Jinxin Liu, Jiaying Zhu, Huarui Wang, Chuqing Sun, Na L. Gao, Xing-Ming Zhao & Wei-Hua Chen
Article: 2205386
Published online: 04 May 2023
AbstractforPerformance of Gut Microbiome as an Independent Diagnostic Tool for 20 Diseases: Cross-Cohort Validation of Machine-Learning Classifiers | Full Text | References | PDF (2.3 MB) | EPUB | Supplemental
  • 3899 Views
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Review

Review
Employing pigs to decipher the host genetic effect on gut microbiome: advantages, challenges, and perspectives
Lusheng Huang & Congying Chen
Article: 2205410
Published online: 30 Apr 2023
AbstractforEmploying pigs to decipher the host genetic effect on gut microbiome: advantages, challenges, and perspectives | Full Text | References | PDF (3.1 MB) | EPUB
  • 1731 Views
  • 1 CrossRef citations
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Research Paper

Article
Crohn’s disease proteolytic microbiota enhances inflammation through PAR2 pathway in gnotobiotic mice
Alba Santiago, Amber Hann, Marco Constante, Sara Rahmani, Josie Libertucci, Kyle Jackson, Gaston Rueda, Laura Rossi, Rithwik Ramachandran, Wolfram Ruf, Jon Schertzer, Alberto Caminero, Premysl Bercik, Heather Jean Galipeau & Elena Francisca Verdu
Article: 2205425
Published online: 02 May 2023
AbstractforCrohn’s disease proteolytic microbiota enhances inflammation through PAR2 pathway in gnotobiotic mice | Full Text | References | PDF (1.5 MB) | EPUB | Supplemental
  • 3301 Views
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Review

Review
Interlink between the gut microbiota and inflammation in the context of oxidative stress in Alzheimer’s disease progression
Tushar K. Das & Bhanu P. Ganesh
Article: 2206504
Published online: 01 May 2023
AbstractforInterlink between the gut microbiota and inflammation in the context of oxidative stress in Alzheimer’s disease progression | Full Text | References | PDF (7.8 MB) | EPUB
  • 3707 Views
  • 10 CrossRef citations
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Review
Maternal microbe-specific modulation of the offspring microbiome and development during pregnancy and lactation
Min Tian, Qihui Li, Tenghui Zheng, Siwang Yang, Fang Chen, Wutai Guan & Shihai Zhang
Article: 2206505
Published online: 15 May 2023
AbstractforMaternal microbe-specific modulation of the offspring microbiome and development during pregnancy and lactation | Full Text | References | PDF (4.3 MB) | EPUB
  • 3634 Views
  • 8 CrossRef citations
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Research Paper

Article
The propionate-GPR41 axis in infancy protects from subsequent bronchial asthma onset
Takashi Ito, Yumiko Nakanishi, Ryohei Shibata, Noriko Sato, Toshi Jinnohara, Sayo Suzuki, Wataru Suda, Masahira Hattori, Ikuo Kimura, Taiji Nakano, Fumiya Yamaide, Naoki Shimojo & Hiroshi Ohno
Article: 2206507
Published online: 02 May 2023
AbstractforThe propionate-GPR41 axis in infancy protects from subsequent bronchial asthma onset | Full Text | References | PDF (3.5 MB) | EPUB | Supplemental
  • 2154 Views
  • 3 CrossRef citations
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Article
Characterization of Bifidobacterium kashiwanohense that utilizes both milk- and plant-derived oligosaccharides
Kento Orihara, Kana Yahagi, Yuki Saito, Yohei Watanabe, Toshio Sasai, Taeko Hara, Naoki Tsukuda, Kaihei Oki, Junji Fujimoto & Takahiro Matsuki
Article: 2207455
Published online: 15 May 2023
AbstractforCharacterization of Bifidobacterium kashiwanohense that utilizes both milk- and plant-derived oligosaccharides | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 1963 Views
  • 1 CrossRef citations
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Article
Recombinant production of a diffusible signal factor inhibits Salmonella invasion and animal carriage
Mudasir Ali Rather, Rimi Chowdhury, Paulina D. Pavinski Bitar & Craig Altier
Article: 2208498
Published online: 09 May 2023
AbstractforRecombinant production of a diffusible signal factor inhibits Salmonella invasion and animal carriage | Full Text | References | PDF (3.2 MB) | EPUB | Supplemental
  • 1185 Views
  • 2 CrossRef citations
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Article
Bacterial and metabolic phenotypes associated with inadequate response to ursodeoxycholic acid treatment in primary biliary cholangitis
Laura Martinez-Gili, Alexandros Pechlivanis, Julie A.K. McDonald, Sofina Begum, Jonathan Badrock, Jessica K. Dyson, Rebecca Jones, Gideon Hirschfield, Stephen D. Ryder, Richard Sandford, Simon Rushbrook, Douglas Thorburn, Simon D. Taylor-Robinson, Mary M.E. Crossey, Julian R. Marchesi, George Mells, Elaine Holmes & David Jones
Article: 2208501
Published online: 16 May 2023
AbstractforBacterial and metabolic phenotypes associated with inadequate response to ursodeoxycholic acid treatment in primary biliary cholangitis | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 2089 Views
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Review

Review
The role of Drosophila microbiota in gut homeostasis and immunity
Ghada Tafesh-Edwards & Ioannis Eleftherianos
Article: 2208503
Published online: 02 May 2023
AbstractforThe role of Drosophila microbiota in gut homeostasis and immunity | Full Text | References | PDF (1 MB) | EPUB
  • 3213 Views
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Research Paper

Article
Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice
Torben Sølbeck Rasmussen, Caroline M. Junker Mentzel, Malene Refslund Danielsen, Rasmus Riemer Jakobsen, Line Sidsel Fisker Zachariassen, Josue Leonardo Castro Mejia, Anders Brunse, Lars Hestbjerg Hansen, Camilla Hartmann Friis Hansen, Axel Kornerup Hansen & Dennis Sandris Nielsen
Article: 2208504
Published online: 07 May 2023
AbstractforFecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice | Full Text | References | PDF (1.4 MB) | EPUB | Supplemental
  • 2457 Views
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Open Access
Article
SaaS sRNA promotes Salmonella intestinal invasion via modulating MAPK inflammatory pathway
Linlin Cai, Yunting Xie, Liangting Shao, Haijing Hu, Xinglian Xu, Huhu Wang & Guanghong Zhou
Article: 2211184
Published online: 09 May 2023
AbstractforSaaS sRNA promotes Salmonella intestinal invasion via modulating MAPK inflammatory pathway | Full Text | References | PDF (15.3 MB) | EPUB | Supplemental
  • 1537 Views
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Open Access
Article
Dietary palmitoleic acid reprograms gut microbiota and improves biological therapy against colitis
Yiwei Chen, Qiongdan Mai, Zixu Chen, Tao Lin, Yongjie Cai, Jing Han, Ying Wang, Mudan Zhang, Shimin Tan, Zhiying Wu, Lingming Chen, Zhiyi Zhang, Yi Yang, Taimei Cui, Beiyin Ouyang, Yue Sun, Lijia Yang, Lin Xu, Sien Zhang, Jian Li, Hongbo Shen, Linna Liu, Lingchan Zeng, Shenghong Zhang & Gucheng Zeng
Article: 2211501
Published online: 18 May 2023
AbstractforDietary palmitoleic acid reprograms gut microbiota and improves biological therapy against colitis | Full Text | References | PDF (20.1 MB) | EPUB | Supplemental
  • 3837 Views
  • 2 CrossRef citations
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Review

Review Article
The infant gut microbiota: in pursuit of non-protein nitrogen
Patrick Schimmel, Bernd Stahl, Jan Knol & Clara Belzer
Article: 2211917
Published online: 24 May 2023
AbstractforThe infant gut microbiota: in pursuit of non-protein nitrogen | Full Text | References | PDF (1.6 MB) | EPUB
  • 2230 Views
  • 1 CrossRef citations
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Review Article
The emerging role of the gut mycobiome in liver diseases
Natalia Szóstak, Marek Figlerowicz & Anna Philips
Article: 2211922
Published online: 15 May 2023
AbstractforThe emerging role of the gut mycobiome in liver diseases | Full Text | References | PDF (394 KB) | EPUB
  • 1757 Views
  • 4 CrossRef citations
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Open Access

Research Paper

Article
Children and adolescents with attention deficit hyperactivity disorder and autism spectrum disorder share distinct microbiota compositions
Caspar Bundgaard-Nielsen, Marlene Briciet Lauritsen, Julie Kristine Knudsen, Louise Søndergaard Rold, Margit Hørup Larsen, Peter Hindersson, Annemarie Brusen Villadsen, Peter D. C. Leutscher, Søren Hagstrøm, Mette Nyegaard & Suzette Sørensen
Article: 2211923
Published online: 18 May 2023
AbstractforChildren and adolescents with attention deficit hyperactivity disorder and autism spectrum disorder share distinct microbiota compositions | Full Text | References | PDF (10.4 MB) | EPUB | Supplemental
  • 2925 Views
  • 8 CrossRef citations
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Open Access
Article
Gut microbiota dysbiosis promotes the development of epithelial ovarian cancer via regulating Hedgehog signaling pathway
Xinyue Hu, Xuan Xu, Xiangdi Zeng, Rui Jin, Shengnan Wang, Huifu Jiang, Yuwen Tang, Guanxiang Chen, Jing Wei, Tingtao Chen & Qi Chen
Article: 2221093
Published online: 06 Jun 2023
AbstractforGut microbiota dysbiosis promotes the development of epithelial ovarian cancer via regulating Hedgehog signaling pathway | Full Text | References | PDF (9.3 MB) | EPUB | Supplemental
  • 1984 Views
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Article
Psyllium fiber protects mice against western diet-induced metabolic syndrome via the gut microbiota-dependent mechanism
Alexis Bretin, Beng San Yeoh, Vu L. Ngo, Lavanya Reddivari, Michael Pellizzon, Matam Vijay-Kumar & Andrew T. Gewirtz
Article: 2221095
Published online: 12 Jun 2023
AbstractforPsyllium fiber protects mice against western diet-induced metabolic syndrome via the gut microbiota-dependent mechanism | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 2711 Views
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Article
Deletion of hepatic growth hormone receptor (GHR) alters the mouse gut microbiota by affecting bile acid metabolism
Zichao Yu, Yu Wang, Fang Zhang, Rui Ma, Xiaoyu Yang, Kun Yang, Ai Mi, Liyuan Ran & Yingjie Wu
Article: 2221098
Published online: 12 Jun 2023
AbstractforDeletion of hepatic growth hormone receptor (GHR) alters the mouse gut microbiota by affecting bile acid metabolism | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 1633 Views
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Open Access
Article
Key bacterial taxa determine longitudinal dynamics of aromatic amino acid catabolism in infants’ gut
Martin F. Laursen, Anurag K. Sinha, Mikael Pedersen & Henrik M. Roager
Article: 2221426
Published online: 25 Jun 2023
AbstractforKey bacterial taxa determine longitudinal dynamics of aromatic amino acid catabolism in infants’ gut | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 2202 Views
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Open Access
Article
Microbial genes outperform species and SNVs as diagnostic markers for Crohn’s disease on multicohort fecal metagenomes empowered by artificial intelligence
Sheng Gao, Xiang Gao, Ruixin Zhu, Dingfeng Wu, Zhongsheng Feng, Na Jiao, Ruicong Sun, Wenxing Gao, Qing He, Zhanju Liu & Lixin Zhu
Article: 2221428
Published online: 06 Jun 2023
AbstractforMicrobial genes outperform species and SNVs as diagnostic markers for Crohn’s disease on multicohort fecal metagenomes empowered by artificial intelligence | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 3104 Views
  • 4 CrossRef citations
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Article
The effect of vitamin D supplementation on the gut microbiome in older Australians – Results from analyses of the D-Health Trial
Hai Pham, Mary Waterhouse, Sabbir Rahman, Catherine Baxter, Briony Duarte Romero, Donald S. A. McLeod, Peter R. Ebeling, Dallas R English, Gunter Hartel, Rachel L. O’Connell, Jolieke C. van der Pols, Alison J. Venn, Penelope M. Webb, David C. Whiteman, Flavia Huygens & Rachel E. Neale
Article: 2221429
Published online: 07 Jun 2023
AbstractforThe effect of vitamin D supplementation on the gut microbiome in older Australians – Results from analyses of the D-Health Trial | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 2122 Views
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Open Access
Article
Resynchronized rhythmic oscillations of gut microbiota drive time-restricted feeding induced nonalcoholic steatohepatitis alleviation
Jiafeng Xia, Wanru Guo, Ming Hu, Xiuyuan Jin, Sitong Zhang, Boqiang Liu, Hangyuan Qiu, Kaicen Wang, Aoxiang Zhuge, Shengjie Li, Zhongkang Ji, Lanjuan Li & Kaijin Xu
Article: 2221450
Published online: 12 Jun 2023
AbstractforResynchronized rhythmic oscillations of gut microbiota drive time-restricted feeding induced nonalcoholic steatohepatitis alleviation | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 2367 Views
  • 4 CrossRef citations
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Open Access

Review

Review Article
The gut microbiota in breast cancer development and treatment: The good, the bad, and the useful!
Deeptashree Nandi, Sheetal Parida & Dipali Sharma
Article: 2221452
Published online: 12 Jun 2023
AbstractforThe gut microbiota in breast cancer development and treatment: The good, the bad, and the useful! | Full Text | References | PDF (1.9 MB) | EPUB
  • 4194 Views
  • 7 CrossRef citations
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Research Paper

Article
Necrotizing enterocolitis, gut microbes, and sepsis
Johannes W. Duess, Maame E. Sampah, Carla M. Lopez, Koichi Tsuboi, Daniel J. Scheese, Chhinder P. Sodhi & David J. Hackam
Article: 2221470
Published online: 13 Jun 2023
AbstractforNecrotizing enterocolitis, gut microbes, and sepsis | Full Text | References | PDF (676 KB) | EPUB
  • 3779 Views
  • 3 CrossRef citations
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Open Access
Article
Dietary sugars silence the master regulator of carbohydrate utilization in human gut Bacteroides species
Victoria H. Pearce, Eduardo A. Groisman & Guy E. Townsend II
Article: 2221484
Published online: 26 Jun 2023
AbstractforDietary sugars silence the master regulator of carbohydrate utilization in human gut Bacteroides species | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 1839 Views
  • 1 CrossRef citations
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Open Access
Article
Akkermansia muciniphila inhibits nonalcoholic steatohepatitis by orchestrating TLR2-activated γδT17 cell and macrophage polarization
Yuqiu Han, Qi Ling, Li Wu, Xiaosen Wang, Zhifei Wang, Jun Chen, Zhipeng Zheng, Ziyuan Zhou, Longfei Jia, Lanjuan Li & Baohong Wang
Article: 2221485
Published online: 22 Jun 2023
AbstractforAkkermansia muciniphila inhibits nonalcoholic steatohepatitis by orchestrating TLR2-activated γδT17 cell and macrophage polarization | Full Text | References | PDF (3.3 MB) | EPUB | Supplemental
  • 2800 Views
  • 5 CrossRef citations
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Open Access

Review

Review Article
Microbiome-targeting therapies in the neonatal intensive care unit: safety and efficacy
Anna DeVeaux, Jian Ryou, Gautam Dantas, Barbara B. Warner & Phillip I. Tarr
Article: 2221758
Published online: 26 Jun 2023
AbstractforMicrobiome-targeting therapies in the neonatal intensive care unit: safety and efficacy | Full Text | References | PDF (490.8 KB) | EPUB
  • 1985 Views
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Research Paper

Article
L-Arabinose inhibits Shiga toxin type 2-converting bacteriophage induction in Escherichia coli O157:H7
Jie Hu, Yifan Wu, Xingjian Zhou, Luyuan Kang, Shiyi Zhang, Yisi Liu, Yu Pi, Xilong Li, Junjun Wang & Dandan Han
Article: 2221778
Published online: 18 Jun 2023
AbstractforL-Arabinose inhibits Shiga toxin type 2-converting bacteriophage induction in Escherichia coli O157:H7 | Full Text | References | PDF (11.3 MB) | EPUB | Supplemental
  • 1812 Views
  • 2 CrossRef citations
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Open Access
Article
Genome-wide multi-omics analysis reveals the nutrient-dependent metabolic features of mucin-degrading gut bacteria
Kyoung Su Kim, Eunike Tiffany, Ji-Young Lee, Ara Oh, Hyeon-Su Jin, Ji-Sun Kim, Jung-Sook Lee, Myung Hee Nam, Soo-Jong Hong, Sowon Park, Hong Koh, Bong-Soo Kim, Yun Kyung Lee & Dong-Woo Lee
Article: 2221811
Published online: 12 Jun 2023
AbstractforGenome-wide multi-omics analysis reveals the nutrient-dependent metabolic features of mucin-degrading gut bacteria | Full Text | References | PDF (3.7 MB) | EPUB | Supplemental
  • 3741 Views
  • 1 CrossRef citations
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Open Access
Article
Systemic exposure to bacterial amyloid curli alters the gut mucosal immune response and the microbiome, exacerbating Salmonella-induced arthritis
Shingo Bessho, Kaitlyn C. M. Grando, Kathrine Kyrylchuk, Amanda Miller, Andres J. Klein-Szanto, Wenhan Zhu, Stefania Gallucci, Vincent Tam & Çagla Tükel
Article: 2221813
Published online: 14 Jun 2023
AbstractforSystemic exposure to bacterial amyloid curli alters the gut mucosal immune response and the microbiome, exacerbating Salmonella-induced arthritis | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 1641 Views
  • 2 CrossRef citations
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Open Access

Review

Review Article
Altered intestinal microbiome and epithelial damage aggravate intestinal graft-versus-host disease
Fei Gao, Hengwei Wu, Limengmeng Wang, Yanmin Zhao & He Huang
Article: 2221821
Published online: 12 Jun 2023
AbstractforAltered intestinal microbiome and epithelial damage aggravate intestinal graft-versus-host disease | Full Text | References | PDF (1 MB) | EPUB
  • 1469 Views
  • 1 CrossRef citations
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Research Paper

Article
Dietary iron modulates gut microbiota and induces SLPI secretion to promote colorectal tumorigenesis
Chen Liu, Junli Gong, Qiang Zhang, Guangyuan Chen, Shengmei Yin, Zhanhao Luo, Wanyi Zeng, Jing Yu, Ping Lan & Zhen He
Article: 2221978
Published online: 13 Jun 2023
AbstractforDietary iron modulates gut microbiota and induces SLPI secretion to promote colorectal tumorigenesis | Full Text | References | PDF (4.6 MB) | EPUB | Supplemental
  • 2198 Views
  • 1 CrossRef citations
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Open Access
Article
Oxygen concentration modulates colibactin production
Nadège Bossuet, Cécile Guyonnet, Camille V Chagneau, Min Tang-Fichaux, Marie Penary, Dorian Loubet, Priscilla Branchu, Eric Oswald & Jean-Philippe Nougayrede
Article: 2222437
Published online: 13 Jun 2023
AbstractforOxygen concentration modulates colibactin production | Full Text | References | PDF (1.6 MB) | EPUB | Supplemental
  • 1264 Views
  • 2 CrossRef citations
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Open Access

Commentary and Views

Comment
Probiotic: is diet part of the efficacy equation?
Héloïse Rytter, Emilie Combet & Benoit Chassaing
Article: 2222438
Published online: 28 Jun 2023
AbstractforProbiotic: is diet part of the efficacy equation? | Full Text | References | PDF (321 KB) | EPUB
  • 1454 Views
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Review

Review Article
L-arginine metabolism as pivotal interface of mutual host–microbe interactions in the gut
Björn Nüse, Tim Holland, Manfred Rauh, Roman G. Gerlach & Jochen Mattner
Article: 2222961
Published online: 26 Jun 2023
AbstractforL-arginine metabolism as pivotal interface of mutual host–microbe interactions in the gut | Full Text | References | PDF (2.8 MB) | EPUB
  • 2569 Views
  • 8 CrossRef citations
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Open Access

Research Paper

Article
Faecal Microbiota transplantation affects liver DNA methylation in Non-alcoholic fatty liver disease: a multi-omics approach
Daniela Stols-Gonçalves, Anne Linde Mak, Mette S. Madsen, Eduard W. J. van der Vossen, Eveline Bruinstroop, Peter Henneman, Femke Mol, Torsten P. M. Scheithauer, Loek Smits, Julia Witjes, Abraham Stijn Meijnikman, Joanne Verheij, Max Nieuwdorp, Adriaan G. Holleboom & Evgeni Levin
Article: 2223330
Published online: 14 Jun 2023
AbstractforFaecal Microbiota transplantation affects liver DNA methylation in Non-alcoholic fatty liver disease: a multi-omics approach | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 5261 Views
  • 7 CrossRef citations
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Open Access
Article
Comparative genomics and phenotypic studies to determine site-specificity of Escherichia coli in the lower gastrointestinal tract of humans
Rasel Barua, Paul Pavli, David M Gordon & Claire L O’Brien
Article: 2223332
Published online: 20 Jun 2023
AbstractforComparative genomics and phenotypic studies to determine site-specificity of Escherichia coli in the lower gastrointestinal tract of humans | Full Text | References | PDF (4.9 MB) | EPUB | Supplemental
  • 1231 Views
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Open Access
Article
Gut microbiota in nonalcoholic fatty liver disease: a PREDIMED-Plus trial sub analysis
Ana María Gómez-Pérez, Patricia Ruiz-Limón, Jordi Salas-Salvadó, Jesús Vioque, Dolores Corella, Montse Fitó, Josep Vidal, Alessandro Atzeni, Laura Torres-Collado, Andrea Álvarez-Sala, María Ángeles Martínez, Albert Goday, David Benaiges, Jesús García-Gavilán, María Rosa Bernal López, Isabel Moreno-Indias & Francisco J. Tinahones
Article: 2223339
Published online: 21 Jun 2023
AbstractforGut microbiota in nonalcoholic fatty liver disease: a PREDIMED-Plus trial sub analysis | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 2856 Views
  • 7 CrossRef citations
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Open Access
Article
Dynamic associations between the respiratory tract and gut antibiotic resistome of patients with COVID-19 and its prediction power for disease severity
Yifei Shen, Wenxin Qu, Fei Yu, Dan Zhang, Qianda Zou, Dongsheng Han, Mengxiao Xie, Xiao Chen, Lingjun Yuan, Bin Lou, Guoliang Xie, Ruonan Wang, Xianzhi Yang, Weizhen Chen, Qi Wang, Yun Teng, Yuejiao Dong, Li Huang, Jiaqi Bao, Chang Liu, Wei Wu, Enhui Shen, Longjiang Fan, Michael P. Timko, Shufa Zheng & Yu Chen
Article: 2223340
Published online: 12 Jun 2023
AbstractforDynamic associations between the respiratory tract and gut antibiotic resistome of patients with COVID-19 and its prediction power for disease severity | Full Text | References | PDF (4 MB) | EPUB | Supplemental
  • 1256 Views
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Review

Review Article
Gut microbiota changes associated with Clostridioides difficile infection and its various treatment strategies
Anne J. Gonzales-Luna, Travis J. Carlson & Kevin W. Garey
Article: 2223345
Published online: 15 Jun 2023
AbstractforGut microbiota changes associated with Clostridioides difficile infection and its various treatment strategies | Full Text | References | PDF (951.4 KB) | EPUB
  • 1976 Views
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Research Paper

Article
MMINP: A computational framework of microbe-metabolite interactions-based metabolic profiles predictor based on the O2-PLS algorithm
Wenli Tang, Huimin Zheng, Shuangbin Xu, Pan Li, Li Zhan, Xiao Luo, Zehan Dai, Qianwen Wang & Guangchuang Yu
Article: 2223349
Published online: 12 Jun 2023
AbstractforMMINP: A computational framework of microbe-metabolite interactions-based metabolic profiles predictor based on the O2-PLS algorithm | Full Text | References | PDF (4.8 MB) | EPUB | Supplemental
  • 1958 Views
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Article
Ordering taxa in image convolution networks improves microbiome-based machine learning accuracy
Oshrit Shtossel, Haim Isakov, Sondra Turjeman, Omry Koren & Yoram Louzoun
Article: 2224474
Published online: 21 Jun 2023
AbstractforOrdering taxa in image convolution networks improves microbiome-based machine learning accuracy | Full Text | References | PDF (6.9 MB) | EPUB | Supplemental
  • 1455 Views
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Article
Increased intestinal permeability and downregulation of absorptive ion transporters Nhe3, Dra, and Sglt1 contribute to diarrhea during Clostridioides difficile infection
F. Christopher Peritore-Galve, Izumi Kaji, Anna Smith, Lauren M. Walker, John A. Shupe, M. Kay Washington, Holly M. Scott Algood, Pradeep K. Dudeja, James R. Goldenring & D. Borden Lacy
Article: 2225841
Published online: 23 Jun 2023
AbstractforIncreased intestinal permeability and downregulation of absorptive ion transporters Nhe3, Dra, and Sglt1 contribute to diarrhea during Clostridioides difficile infection | Full Text | References | PDF (8.4 MB) | EPUB | Supplemental
  • 1930 Views
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Review

Review Article
Maternal microbiome disturbance induces deficits in the offspring’s behaviors: a systematic review and meta-analysis
Lucas Hassib, Cilene Lino de Oliveira, Guilherme Araujo Rouvier, Alexandre Kanashiro, Francisco Silveira Guimarães & Frederico Rogério Ferreira
Article: 2226282
Published online: 03 Jul 2023
AbstractforMaternal microbiome disturbance induces deficits in the offspring’s behaviors: a systematic review and meta-analysis | Full Text | References | PDF (2.1 MB) | EPUB | Supplemental
  • 2856 Views
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Research Paper

Article
Machine learning model for predicting age in healthy individuals using age-related gut microbes and urine metabolites
Seung-Ho Seo, Chang-Su Na, Seong-Eun Park, Eun-Ju Kim, Woo-Seok Kim, ChunKyun Park, Seungmi Oh, Yanghee You, Mee-Hyun Lee, Kwang-Moon Cho, Sun Jae Kwon, Tae Woong Whon, Seong Woon Roh & Hong-Seok Son
Article: 2226915
Published online: 23 Jun 2023
AbstractforMachine learning model for predicting age in healthy individuals using age-related gut microbes and urine metabolites | Full Text | References | PDF (2.4 MB) | EPUB | Supplemental
  • 2116 Views
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Review

Review Article
Neglected gut microbiome: interactions of the non-bacterial gut microbiota with enteric pathogens
Kanchan Jaswal, Olivia A Todd & Judith Behnsen
Article: 2226916
Published online: 26 Jun 2023
AbstractforNeglected gut microbiome: interactions of the non-bacterial gut microbiota with enteric pathogens | Full Text | References | PDF (6 MB) | EPUB
  • 3094 Views
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Research Paper

Article
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics
Arianna Basile, Almut Heinken, Johannes Hertel, Larry Smarr, Weizhong Li, Laura Treu, Giorgio Valle, Stefano Campanaro & Ines Thiele
Article: 2226921
Published online: 12 Jul 2023
AbstractforLongitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics | Full Text | References | PDF (4.2 MB) | EPUB | Supplemental
  • 2500 Views
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Review

Review Article
Targeting nonalcoholic fatty liver disease via gut microbiome-centered therapies
Mijra Koning, Hilde Herrema, Max Nieuwdorp & Abraham S. Meijnikman
Article: 2226922
Published online: 26 Jun 2023
AbstractforTargeting nonalcoholic fatty liver disease via gut microbiome-centered therapies | Full Text | References | PDF (1.3 MB) | EPUB
  • 2686 Views
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Research Paper

Article
Alterations in the gut virome are associated with type 2 diabetes and diabetic nephropathy
Gang Fan, Feng Cao, Tingting Kuang, Huan Yi, Chengcheng Zhao, Lijie Wang, Jiayan Peng, Zhenhua Zhuang, Tong Xu, Yuting Luo, Yuchen Xie, Hongying Li, Kun Zhang, Yujiao Zeng, Xiyu Zhang, Sihan Peng, Xianliang Qiu, Dongqi Zhou, Huan Liang, Bin Yang, Jian Kang, Ya Liu & Yi Zhang
Article: 2226925
Published online: 22 Jun 2023
AbstractforAlterations in the gut virome are associated with type 2 diabetes and diabetic nephropathy | Full Text | References | PDF (6.5 MB) | EPUB | Supplemental
  • 2341 Views
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Article
The claim of primacy of human gut Bacteroides ovatus in dietary cellobiose degradation
Meixia Li, Yeqing Wang, Ciliang Guo, Sheng Wang, Liangzhen Zheng, Yifan Bu & Kan Ding
Article: 2227434
Published online: 22 Jun 2023
AbstractforThe claim of primacy of human gut Bacteroides ovatus in dietary cellobiose degradation | Full Text | References | PDF (3 MB) | EPUB | Supplemental
  • 1748 Views
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Article
High variation across E. coli hybrid isolates identified in metabolism-related biological pathways co-expressed with virulent genes
Rahul Gomes, Ashleigh Denison Kroschel, Stephanie Day & Rick Jansen
Article: 2228042
Published online: 07 Jul 2023
AbstractforHigh variation across E. coli hybrid isolates identified in metabolism-related biological pathways co-expressed with virulent genes | Full Text | References | PDF (7.8 MB) | EPUB
  • 882 Views
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Article
Strain-level screening of human gut microbes identifies Blautia producta as a new anti-hyperlipidemic probiotic
Wenyi Xu, Jiaqi Yu, Yanan Yang, Zhuanyu Li, Yinghui Zhang, Fang Zhang, Qingshi Wang, Yong Xie, Bowen Zhao & Chongming Wu
Article: 2228045
Published online: 05 Jul 2023
AbstractforStrain-level screening of human gut microbes identifies Blautia producta as a new anti-hyperlipidemic probiotic | Full Text | References | PDF (7.8 MB) | EPUB | Supplemental
  • 3171 Views
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Review

Review Article
Fecal microbiota transplantation in hematopoietic cell transplant and cellular therapy recipients: lessons learned and the path forward
Shaghayegh Habibi & Armin Rashidi
Article: 2229567
Published online: 29 Jun 2023
AbstractforFecal microbiota transplantation in hematopoietic cell transplant and cellular therapy recipients: lessons learned and the path forward | Full Text | References | PDF (417.7 KB) | EPUB
  • 1195 Views
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Research Paper

Article
Cytotoxic necrotizing factor 1 hinders colon tumorigenesis induced by colibactin-producing Escherichia coli in ApcMin/+ mice
Héloïse Chat, Guillaume Dalmasso, Catherine Godfraind, Virginie Bonnin, Racha Beyrouthy, Mathilde Bonnet, Nicolas Barnich, Amel Mettouchi, Emmanuel Lemichez, Richard Bonnet & Julien Delmas
Article: 2229569
Published online: 07 Jul 2023
AbstractforCytotoxic necrotizing factor 1 hinders colon tumorigenesis induced by colibactin-producing Escherichia coli in ApcMin/+ mice | Full Text | References | PDF (7.2 MB) | EPUB | Supplemental
  • 1290 Views
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Review

Review Article
Better together–Salmonella biofilm-associated antibiotic resistance
Adrianna Aleksandrowicz, Ewa Carolak, Agata Dutkiewicz, Aleksandra Błachut, Wiktoria Waszczuk & Krzysztof Grzymajlo
Article: 2229937
Published online: 04 Jul 2023
AbstractforBetter together–Salmonella biofilm-associated antibiotic resistance | Full Text | References | PDF (2.5 MB) | EPUB
  • 3919 Views
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Research Paper

Article
Limosilactobacillus reuteri DSM 17938 supplementation and SARS-CoV-2 specific antibody response in healthy adults: a randomized, triple-blinded, placebo-controlled trial
Richard A. Forsgård, Julia Rode, Karin Lobenius-Palmér, Annalena Kamm, Snehal Patil, Mirriam G. J. Tacken, Marleen A. H. Lentjes, Jakob Axelsson, Gianfranco Grompone, Scott Montgomery & Robert J. Brummer
Article: 2229938
Published online: 04 Jul 2023
AbstractforLimosilactobacillus reuteri DSM 17938 supplementation and SARS-CoV-2 specific antibody response in healthy adults: a randomized, triple-blinded, placebo-controlled trial | Full Text | References | PDF (1.2 MB) | EPUB | Supplemental
  • 3342 Views
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Article
In vitro adhesion, pilus expression, and in vivo amelioration of antibiotic-induced microbiota disturbance by Bifidobacterium spp. strains from fecal donors
Aki Ronkainen, Imran Khan, Eva Krzyżewska-Dudek, Kaisa Hiippala, Tobias L. Freitag & Reetta Satokari
Article: 2229944
Published online: 04 Jul 2023
AbstractforIn vitro adhesion, pilus expression, and in vivo amelioration of antibiotic-induced microbiota disturbance by Bifidobacterium spp. strains from fecal donors | Full Text | References | PDF (2.5 MB) | EPUB | Supplemental
  • 1542 Views
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Article
Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice
Poonamjot Deol, Paul Ruegger, Geoffrey D. Logan, Ali Shawki, Jiang Li, Jonathan D. Mitchell, Jacqueline Yu, Varadh Piamthai, Sarah H. Radi, Sana Hasnain, Kamil Borkowski, John W. Newman, Declan F. McCole, Meera G. Nair, Ansel Hsiao, James Borneman & Frances M. Sladek
Article: 2229945
Published online: 03 Jul 2023
AbstractforDiet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice | Full Text | References | PDF (5 MB) | EPUB | Supplemental
  • 8688 Views
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Brief Report

Brief Report
Akkermansia muciniphila reduces susceptibility to Listeria monocytogenes infection in mice fed a high-fat diet
Jonathan M. Keane, Vanessa Las Heras, Jorge Pinheiro, Jamie A. FitzGerald, María A. Núñez-Sánchez, Cara M. Hueston, Liam O’Mahony, Paul D. Cotter, Colin Hill, Silvia Melgar & Cormac G. M. Gahan
Article: 2229948
Published online: 10 Jul 2023
AbstractforAkkermansia muciniphila reduces susceptibility to Listeria monocytogenes infection in mice fed a high-fat diet | Full Text | References | PDF (3.2 MB) | EPUB
  • 2180 Views
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Research Paper

Article
Phenylpropionic acid produced by gut microbiota alleviates acetaminophen-induced hepatotoxicity
Sungjoon Cho, Xiaotong Yang, Kyoung-Jae Won, Vanessa A. Leone, Eugene B. Chang, Grace Guzman, Yeonju Ko, Ok-Nam Bae, Hyunwoo Lee & Hyunyoung Jeong
Article: 2231590
Published online: 11 Jul 2023
AbstractforPhenylpropionic acid produced by gut microbiota alleviates acetaminophen-induced hepatotoxicity | Full Text | References | PDF (2.8 MB) | EPUB | Supplemental
  • 2501 Views
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Article
Maturation of the gut metabolome during the first year of life in humans
Runze Ouyang, Juan Ding, Yan Huang, Fujian Zheng, Sijia Zheng, Yaorui Ye, Qi Li, Xiaolin Wang, Xiao Ma, Yuxin Zou, Rong Chen, Zhihong Zhuo, Zhen Li, Qi Xin, Lina Zhou, Xin Lu, Zhigang Ren, Xinyu Liu, Petia Kovatcheva-Datchary & Guowang Xu
Article: 2231596
Published online: 10 Jul 2023
AbstractforMaturation of the gut metabolome during the first year of life in humans | Full Text | References | PDF (4.4 MB) | EPUB | Supplemental
  • 2336 Views
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Commentaries and Views

Comment
Advancing therapeutics for recurrent clostridioides difficile infections: an overview of vowst’s FDA approval and implications
Nityanand Jain, Tungki Pratama Umar, Anne-Fleur Fahner & Valdis Gibietis
Article: 2232137
Published online: 11 Jul 2023
AbstractforAdvancing therapeutics for recurrent clostridioides difficile infections: an overview of vowst’s FDA approval and implications | Full Text | References | PDF (330.3 KB) | EPUB
  • 2201 Views
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Research Paper

Article
Gut microbiota-related bile acid metabolism-FXR/TGR5 axis impacts the response to anti-α4β7-integrin therapy in humanized mice with colitis
Bing Han, Xiaodan Lv, Gengfeng Liu, Shiquan Li, Junhua Fan, Lan Chen, Zhixi Huang, Guangfu Lin, Xiaofang Xu, Ziqian Huang, Lingling Zhan & Xiaoping Lv
Article: 2232143
Published online: 11 Jul 2023
AbstractforGut microbiota-related bile acid metabolism-FXR/TGR5 axis impacts the response to anti-α4β7-integrin therapy in humanized mice with colitis | Full Text | References | PDF (8.1 MB) | EPUB | Supplemental
  • 2576 Views
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Article
Dynamic effects of probiotic formula ecologic®825 on human small intestinal ileostoma microbiota: a network theory approach
Jack Jansma, Nicola U. Thome, Markus Schwalbe, Anastasia Chrysovalantou Chatziioannou, Somayah S. Elsayed, Gilles P. van Wezel, Pieter van den Abbeele, Saskia van Hemert & Sahar El Aidy
Article: 2232506
Published online: 07 Jul 2023
AbstractforDynamic effects of probiotic formula ecologic®825 on human small intestinal ileostoma microbiota: a network theory approach | Full Text | References | PDF (4.8 MB) | EPUB | Supplemental
  • 1917 Views
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Review

Review Article
A comprehensive perspective on the interaction between gut microbiota and COVID-19 vaccines
Ming Hong, Tin Lan, Qiuxia Li, Binfei Li, Yong Yuan, Feng Xu & Weijia Wang
Article: 2233146
Published online: 11 Jul 2023
AbstractforA comprehensive perspective on the interaction between gut microbiota and COVID-19 vaccines | Full Text | References | PDF (2.9 MB) | EPUB
  • 2871 Views
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Research Paper

Article
Fucose promotes intestinal stem cell-mediated intestinal epithelial development through promoting Akkermansia-related propanoate metabolism
Caihan Duan, Junhao Wu, Zhe Wang, Chen Tan, Lingzhi Hou, Wei Qian, Chaoqun Han & Xiaohua Hou
Article: 2233149
Published online: 10 Jul 2023
AbstractforFucose promotes intestinal stem cell-mediated intestinal epithelial development through promoting Akkermansia-related propanoate metabolism | Full Text | References | PDF (8.6 MB) | EPUB | Supplemental
  • 3458 Views
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Article
Alterations in fecal β-defensin-3 secretion as a marker of instability of the gut microbiota
Zarwa Saqib, Giada De Palma, Jun Lu, Michael Surette, Premysl Bercik & Stephen Michael Collins
Article: 2233679
Published online: 18 Jul 2023
AbstractforAlterations in fecal β-defensin-3 secretion as a marker of instability of the gut microbiota | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 1542 Views
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Article
Short-term mucosal disruption enables colibactin-producing E. coli to cause long-term perturbation of colonic homeostasis
Christine Harnack, Hilmar Berger, Lichao Liu, Hans-Joachim Mollenkopf, Till Strowig & Michael Sigal
Article: 2233689
Published online: 10 Jul 2023
AbstractforShort-term mucosal disruption enables colibactin-producing E. coli to cause long-term perturbation of colonic homeostasis | Full Text | References | PDF (6.6 MB) | EPUB
  • 1462 Views
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Article
Viral metagenomics of the gut virome of diarrheal children with Rotavirus A infection
Siwen Bao, Hao Wang, Wang Li, Haisheng Wu, Chunying Lu, Liang Yong, Qing Zhang, Xiang Lu, Min Zhao, Juan Lu, Jia Liu, Chukwudozie Kingsley Ikechukwu, Juan Xu, Ping Ni, Ying Xiong, Wen Zhang & Chenglin Zhou
Article: 2234653
Published online: 13 Jul 2023
AbstractforViral metagenomics of the gut virome of diarrheal children with Rotavirus A infection | Full Text | References | PDF (652.4 KB) | EPUB | Supplemental
  • 1873 Views
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Article
Shifting pattern of gut microbiota in pregnant women two decades apart – an observational study
Samuli Rautava, Marta Selma-Royo, Teo Oksanen, Maria Carmen Collado & Erika Isolauri
Article: 2234656
Published online: 19 Jul 2023
AbstractforShifting pattern of gut microbiota in pregnant women two decades apart – an observational study | Full Text | References | PDF (2 MB) | EPUB | Supplemental
  • 1394 Views
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Review

Review Article
Intracellular glycogen accumulation by human gut commensals as a niche adaptation trait
Maria Esteban-Torres, Lorena Ruiz, Valerio Rossini, Ken Nally & Douwe van Sinderen
Article: 2235067
Published online: 01 Aug 2023
AbstractforIntracellular glycogen accumulation by human gut commensals as a niche adaptation trait | Full Text | References | PDF (3.2 MB) | EPUB
  • 1556 Views
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Research Paper

Article
Depletion of butyrate-producing microbes of the Firmicutes predicts nonresponse to FMT therapy in patients with recurrent Clostridium difficile infection
Hongliang Tian, Jiaqu Cui, Chen Ye, Jiangman Zhao, Bo Yang, Yue Xu, Shushen Ji, Le Wang, Xiaoqiong Lv, Chunlian Ma, Shailan Zhou, Ning Li, Xinjun Wang, Huanlong Qin & Qiyi Chen
Article: 2236362
Published online: 19 Jul 2023
AbstractforDepletion of butyrate-producing microbes of the Firmicutes predicts nonresponse to FMT therapy in patients with recurrent Clostridium difficile infection | Full Text | References | PDF (6.5 MB) | EPUB | Supplemental
  • 1888 Views
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Review

Review Article
Colorectal cancer and gut microbiota studies in China
Zikai Wang, Wanyue Dan, Nana Zhang, Jingyuan Fang & Yunsheng Yang
Article: 2236364
Published online: 23 Jul 2023
AbstractforColorectal cancer and gut microbiota studies in China | Full Text | References | PDF (2 MB) | EPUB
  • 4391 Views
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Review Article
Gut microbial beta-glucuronidase: a vital regulator in female estrogen metabolism
Shiwan Hu, Qiyou Ding, Wei Zhang, Mengjiao Kang, Jing Ma & Linhua Zhao
Article: 2236749
Published online: 09 Aug 2023
AbstractforGut microbial beta-glucuronidase: a vital regulator in female estrogen metabolism | Full Text | References | PDF (1.6 MB) | EPUB
  • 6242 Views
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Research Paper

Article
Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice
Joshua M. Borin, Roland Liu, Yanhan Wang, Tsung-Chin Wu, Jessica Chopyk, Lina Huang, Peiting Kuo, Chandrabali Ghose, Justin R. Meyer, Xin M. Tu, Bernd Schnabl & David T. Pride
Article: 2236750
Published online: 20 Jul 2023
AbstractforFecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice | Full Text | References | PDF (2.7 MB) | EPUB | Supplemental
  • 6766 Views
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Article
Transplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass
Lina Lawenius, Carrie Cowardin, Louise Grahnemo, Julia M. Scheffler, Karin Horkeby, Cecilia Engdahl, Jianyao Wu, Liesbeth Vandenput, Antti Koskela, Juha Tuukkanen, Eivind Coward, Kristian Hveem, Arnulf Langhammer, Sanna Abrahamsson, Jeffrey I. Gordon, Klara Sjögren & Claes Ohlsson
Article: 2236755
Published online: 20 Jul 2023
AbstractforTransplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass | Full Text | References | PDF (8 MB) | EPUB | Supplemental
  • 2145 Views
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Review

Review Article
Unveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization
Ziyu Huang, Yue Li, Heekuk Park, Martin Ho, Kanchan Bhardwaj, Naoki Sugimura, Hye Won Lee, Huicui Meng, Matthias P. Ebert, Kang Chao, Elke Burgermeister, Aadra P. Bhatt, Sudarshan A. Shetty, Kai Li, Weiping Wen & Tao Zuo
Article: 2237645
Published online: 27 Jul 2023
AbstractforUnveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization | Full Text | References | PDF (11.4 MB) | EPUB
  • 2702 Views
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Research Paper

Article
Protection against Metabolic Associated Fatty Liver Disease by Protocatechuic Acid
Jijun Tan, Ruizhi Hu, Jiatai Gong, Chengkun Fang, Yanli Li, Ming Liu, Ziyu He, De-Xing Hou, Hongfu Zhang, Jianhua He & Shusong Wu
Article: 2238959
Published online: 28 Jul 2023
AbstractforProtection against Metabolic Associated Fatty Liver Disease by Protocatechuic Acid | Full Text | References | PDF (5.9 MB) | EPUB | Supplemental
  • 3128 Views
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Article
Exosomal-miR-129-2-3p derived from Fusobacterium nucleatum-infected intestinal epithelial cells promotes experimental colitis through regulating TIMELESS-mediated cellular senescence pathway
Shuchun Wei, Xiaohan Wu, Meilin Chen, Zixuan Xiang, Xiangyun Li, Jixiang Zhang & Weiguo Dong
Article: 2240035
Published online: 07 Aug 2023
AbstractforExosomal-miR-129-2-3p derived from Fusobacterium nucleatum-infected intestinal epithelial cells promotes experimental colitis through regulating TIMELESS-mediated cellular senescence pathway | Full Text | References | PDF (14.4 MB) | EPUB | Supplemental
  • 2522 Views
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Article
Genetic and gut microbiome determinants of SCFA circulating and fecal levels, postprandial responses and links to chronic and acute inflammation
Ana Nogal, Francesco Asnicar, Amrita Vijay, Afroditi Kouraki, Alessia Visconti, Panayiotis Louca, Kari Wong, Andrei-Florin Baleanu, Francesca Giordano, Jonathan Wolf, George Hadjigeorgiou, Richard Davies, Gregory A. Michelotti, Paul W. Franks, Sarah E. Berry, Mario Falchi, Adeel Ikram, Benjamin J. Ollivere, Amy Zheng, Jessica Nightingale, Massimo Mangino, Nicola Segata, William J. Bulsiewicz, Tim D. Spector, Ana M. Valdes & Cristina Menni
Article: 2240050
Published online: 01 Aug 2023
AbstractforGenetic and gut microbiome determinants of SCFA circulating and fecal levels, postprandial responses and links to chronic and acute inflammation | Full Text | References | PDF (3.8 MB) | EPUB | Supplemental
  • 2397 Views
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Article
The phospholipase effector Tle1Vc promotes Vibrio cholerae virulence by killing competitors and impacting gene expression
Ming Liu, Heng Wang, Ying Liu, Miao Tian, Zhao Wang, Run-Dong Shu, Meng-Yu Zhao, Wei-Di Chen, Hao Wang, Hui Wang & Yang Fu
Article: 2241204
Published online: 01 Aug 2023
AbstractforThe phospholipase effector Tle1Vc promotes Vibrio cholerae virulence by killing competitors and impacting gene expression | Full Text | References | PDF (3.6 MB) | EPUB | Supplemental
  • 1992 Views
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Article
Citizen science helps to raise awareness about gut microbiome health in people at risk of developing non-communicable diseases
Silvia Garcia, Sheyla Ordoñez, Victor Manuel López-Molina, Blanca Lacruz-Pleguezuelos, Enrique Carrillo de Santa Pau & Laura Judith Marcos-Zambrano
Article: 2241207
Published online: 02 Aug 2023
AbstractforCitizen science helps to raise awareness about gut microbiome health in people at risk of developing non-communicable diseases | Full Text | References | PDF (1.3 MB) | EPUB | Supplemental
  • 1535 Views
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Article
Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces
Lucía Huertas-Díaz, Rikke Kyhnau, Eugenio Ingribelli, Vera Neuzil-Bunesova, Qing Li, Mari Sasaki, Roger P. Lauener, Caroline Roduit, Remo Frei, CK-CARE Study Group, Ulrik Sundekilde & Clarissa Schwab
Article: 2241209
Published online: 18 Aug 2023
AbstractforBreastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces | Full Text | References | PDF (3.1 MB) | EPUB | Supplemental
  • 2202 Views
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Article
The gut microbiome contributes to somatic morphine withdrawal behavior and implicates a TLR2 mediated mechanism
Bridget Truitt, Greeshma Venigalla, Praveen Singh, Salma Singh, Junyi Tao, Irina Chupikova & Sabita Roy
Article: 2242610
Published online: 17 Aug 2023
AbstractforThe gut microbiome contributes to somatic morphine withdrawal behavior and implicates a TLR2 mediated mechanism | Full Text | References | PDF (3.8 MB) | EPUB | Supplemental
  • 1210 Views
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Article
Robust cross-cohort gut microbiome associations with COVID-19 severity
Junhui Li, Tarini Shankar Ghosh, Rachel MacCann, Patrick Mallon, Colin Hill, Lorraine Draper, David Schult, Liam J. Fanning, Robert Shannon, Corinna Sadlier, Mary Horgan, Liam O’Mahony & Paul W. O’Toole
Article: 2242615
Published online: 07 Aug 2023
AbstractforRobust cross-cohort gut microbiome associations with COVID-19 severity | Full Text | References | PDF (5.9 MB) | EPUB | Supplemental
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Commentary and Views

Comment
The importance of the gut microbiome in the pathogenesis and transmission of SARS-CoV-2
Someone on Earth: “..we moved at the speed of Science!” - Science from the center of the Universe: “Hey man, I’m still waiting for you in the 50s!”
Carlo Brogna, Valentina Viduto, Mark Fabrowski, Simone Cristoni, Giuliano Marino, Luigi Montano & Marina Piscopo
Article: 2244718
Published online: 09 Aug 2023
AbstractforThe importance of the gut microbiome in the pathogenesis and transmission of SARS-CoV-2 | Full Text | References | PDF (1 MB) | EPUB
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Published online: 17 Aug 2023
AbstractforL. rhamnosus CNCM I-3690 survival, adaptation, and small bowel microbiome impact in human | Full Text | References | PDF (9.7 MB) | EPUB | Supplemental
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