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Letter to the Editor

Testing a proposed paradigm shift in analysis of phage DNA packaging

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Article: e1268664 | Received 29 Nov 2016, Accepted 30 Nov 2016, Published online: 04 Jan 2017

Figures & data

Figure 1. DNA packaging of the related phages, T3 and T7. (A) DNA packaging in vivo is illustrated with capsid II participating in the type 1 and proposed type 2 cycles (reviewCitation4). (B) U-NLD capsid II and particles from neighboring fractions [fraction density (g/ml) indicated at the top] are analyzed by SDSPAGE in a 9% polyacrylamide separating gel. The lane labeled WT-CII has wild type T3 NLD capsid II; the lane labeled U-NLD has T3Su-1 U-NLD capsid II. The arrow indicates the direction of electrophoresis; arrowheads indicate origins of electrophoresis. Some gp9 scaffolding protein is present in capsid II. The gp9/gp10 ratio is, however, higher for capsid I. For reasons not known, wild type gp8 formed a doublet band, which it usually does not. (C) EM of U-NLD capsid II with the procedure of references Citation27 and Citation28.

Figure 1. DNA packaging of the related phages, T3 and T7. (A) DNA packaging in vivo is illustrated with capsid II participating in the type 1 and proposed type 2 cycles (reviewCitation4). (B) U-NLD capsid II and particles from neighboring fractions [fraction density (g/ml) indicated at the top] are analyzed by SDSPAGE in a 9% polyacrylamide separating gel. The lane labeled WT-CII has wild type T3 NLD capsid II; the lane labeled U-NLD has T3Su-1 U-NLD capsid II. The arrow indicates the direction of electrophoresis; arrowheads indicate origins of electrophoresis. Some gp9 scaffolding protein is present in capsid II. The gp9/gp10 ratio is, however, higher for capsid I. For reasons not known, wild type gp8 formed a doublet band, which it usually does not. (C) EM of U-NLD capsid II with the procedure of references Citation27 and Citation28.

Figure 2. EM at higher magnification of (A–C) T3Su-1 U-NLD capsid II, (D) T3 heads from the study of reference Citation19, and (E) T3Su-1 NHD capsid II.

Figure 2. EM at higher magnification of (A–C) T3Su-1 U-NLD capsid II, (D) T3 heads from the study of reference Citation19, and (E) T3Su-1 NHD capsid II.