The Mechanisms Underlying Physiological and Molecular Responses to Waterlogging in Flax

References

• Ahmed, S., E. Nawata, M. Hosokawa, Y. Domae, and T. Sakuratani. 2002. Alterations in photosynthesis and some antioxidant enzymatic activities of mungbean subjected to waterlogging. Plant Science 163 (1):117–14. doi:10.1016/S0168-9452(02)00080-8.
   Web of Science ®Google Scholar
• Arslan Ashraf, M. 2012. Waterlogging stress in plants: A review. African Journal of Agricultural Reseearch 7 (13):1976–81. doi:10.5897/ajarx11.084.
   Google Scholar
• Bahmani, R., D. Gwan Kim, J. Na, and S. Hwang. 2019. Expression of the tobacco non-symbiotic class 1 hemoglobin gene Hb1 reduces cadmium levels by modulating Cd transporter expression through decreasing nitric oxide and ROS level in arabidopsis. Frontiers in Plant Science 10 (February):1–19. doi:10.3389/fpls.2019.00201.
   PubMedGoogle Scholar
• Bakshi, A., S. Piy, J. C. Fernandez, C. Chervin, T. Hewezi, and B. M. Binder. 2018. Pethylene receptors signal via a noncanonical pathway to regulate abscisic acid responses. Plant Physiology 176 (1):910–29. doi:10.1104/pp.17.01321.
   PubMed Web of Science ®Google Scholar
• Belda-Palazon, B., L. Rodriguez, M. A. Fernandez, M. C. Cruz Castillo, E. M. Anderson, C. Gao, M. Gonzalez-Guzman, M. Peirats-Llobet, Q. Zhao, N. De Winne, et al. 2016. FYVE1/FREE1 interacts with the PYL4 ABA receptor and mediates its delivery to the vacuolar degradation pathway. The Plant Cell 28 (9):2291–311. doi:10.1105/tpc.16.00178.
   PubMed Web of Science ®Google Scholar
• Bhusal, N., A. Adhikari, M. Lee, A. Han, A. R. Reum Han, and H. S. Kim. 2022. Evaluation of growth responses of six gymnosperm species under long-term excessive irrigation and traits determining species resistance to waterlogging. Agricultural and Forest Meteorology 323 (June):109071. doi:10.1016/j.agrformet.2022.109071.
   Google Scholar
• Bispo, T. M., and E. A. Vieira. 2022. Assimilatory deficit and energy regulation in young handroanthus chrysotrichus plants under flooding stress. Journal of Plant Research 135 (2):323–36. doi:10.1007/s10265-022-01370-3.
   PubMed Web of Science ®Google Scholar
• Bjelková, M., V. Genčurová, and M. Griga. 2011. Accumulation of cadmium by flax and linseed cultivars in field-simulated conditions: A potential for phytoremediation of Cd-contaminated soils. Industrial Crops and Products 33 (3):761–74. doi:10.1016/j.indcrop.2011.01.020.
   Web of Science ®Google Scholar
• Brigelius-Flohé, R., and L. Flohé. 2020. Regulatory phenomena in the glutathione peroxidase superfamily. Antioxidants and Redox Signaling 33 (7):498–516. doi:10.1089/ars.2019.7905.
   PubMed Web of Science ®Google Scholar
• Chang, W., H. Zhao, S. Yu, J. Yu, K. Cai, W. Sun, X. Liu, X. Li, M. Yu, S. Ali, et al. 2020. Comparative transcriptome and metabolomic profiling reveal the complex mechanisms underlying the developmental dynamics of tobacco leaves. Genomics 112 (6):4009–22. doi:10.1016/j.ygeno.2020.07.005.
   PubMed Web of Science ®Google Scholar
• Clement, G., M. Moison, F. Soulay, M. Reisdorf-Cren, and C. Masclaux-Daubresse. 2018. Metabolomics of laminae and midvein during leaf senescence and source-sink metabolite management in brassica napus L. leaves. Journal of Experimental Botany 69 (4):891–903. doi:10.1093/jxb/erx253.
   PubMed Web of Science ®Google Scholar
• Cyle, K. T., A. R. Klein, L. Aristilde, C. E. Martínez, and N. Y. Zhou. 2020. Ecophysiological study of paraburkholderia Sp. strain 1N under soil solution conditions: Dynamic substrate preferences and characterization of carbon use efficiency. Applied and Environmental Microbiology 86 (24). doi: 10.1128/aem.01851-20.
   PubMed Web of Science ®Google Scholar
• Dasgupta, M. G., B. S. George, A. Bhatia, O. Prakash Sidhu, and S. Ranganathan. 2014. Characterization of withania somnifera leaf transcriptome and expression analysis of pathogenesis - related genes during salicylic acid signaling. PLoS One 9 (4):e94803. doi:10.1371/journal.pone.0094803.
   PubMed Web of Science ®Google Scholar
• Dixon, E., I. Rabanser, M. Dzieciol, B. Zwirzitz, M. Wagner, E. Mann, B. Stessl, and S. U. Wetzels. 2019. Reduction potential of steam vacuum and high-pressure water treatment on microbes during beef meat processing. Food Control 106 (March):106728. doi:10.1016/j.foodcont.2019.106728.
   Google Scholar
• Frese, M., S. Schatschneider, J. Voss, F. J. Vorhölter, and K. Niehaus. 2014. Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Xanthomonas campestris pv. campestris. Archives of Biochemistry and Biophysics 546:53–63. doi:10.1016/j.abb.2014.01.023.
   PubMed Web of Science ®Google Scholar
• Gao, Z., X. Hu, Q. Li, G. Xu, and Z. Wang. 2017. Discussion on standard of high-quality linseed oil. Journal of Shanxi Agricultural Sciences 45 (12):2049–51. doi:10.3969/j.issn.1002-2481.2017.12.35.
   Google Scholar
• Goyal, A., V. Sharma, N. Upadhyay, S. Gill, and M. Sihag. 2014. Flax and flaxseed oil: An ancient medicine & modern functional food. Journal of Food Science and Technology 51 (9):1633–53. doi:10.1007/s13197-013-1247-9.
   PubMed Web of Science ®Google Scholar
• Guo, Y., C. Qiu, S. Long, P. Chen, D. Hao, M. Preisner, H. Wang, and Y. Wang. 2017. Digital gene expression profiling of flax (Linum Usitatissimum L.) stem peel identifies genes enriched in fiber-bearing phloem tissue. Gene 626 (January):32–40. doi:10.1016/j.gene.2017.05.002.
   PubMedGoogle Scholar
• Guo, Y., C. Qiu, S. Long, H. Wang, and Y. Wang. 2020. Cadmium accumulation, translocation, and assessment of eighteen Linum usitatissimum L. cultivars growing in heavy metal contaminated soil. International Journal of Phytoremediation 22 (5):490–96. doi:10.1080/15226514.2019.1683714.
   PubMed Web of Science ®Google Scholar
• Guo, Y., L. Wen, J. Chen, G. Pan, Z. Wu, Z. Li, Q. Xiao, Y. Wang, C. Qiu, S. Long, et al. 2021. Comparative transcriptomic analysis identifies key cellulose synthase genes (CESA) and cellulose synthase-like genes (CSL) in fast growth period of flax stem (Linum usitatissimum L.). Journal of Natural Fibers 00 (00):1–16. doi:10.1080/15440478.2021.1993510.
   Google Scholar
• Huang, C. H., F. L. Lee, and C. J. Tai. 2009. The β-tubulin gene as a molecular phylogenetic marker for classification and discrimination of the saccharomyces sensu stricto complex. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 95 (2):135–42. doi:10.1007/s10482-008-9296-1.
   PubMed Web of Science ®Google Scholar
• Hua, Y. P., T. Zhou, Q. Liao, H. X. Song, C. Y. Guan, and Z. H. Zhang. 2018. Genomics-assisted identification and characterization of the genetic variants underlying differential nitrogen use efficiencies in allotetraploid rapeseed genotypes. G3: Genes, Genomes, Genetics 8 (8):2757–71.
   Web of Science ®Google Scholar
• Ke, Y., Y. Kang, M. Wu, H. Liu, S. Hui, Q. Zhang, X. Li, J. Xiao, and S. Wang. 2019. Jasmonic acid-involved OsEDS1 signaling in rice-bacteria interactions. Rice 12 (1):1–12. doi:10.1186/s12284-019-0283-0.
   PubMedGoogle Scholar
• Lee, E. J., K. Y. Kim, J. Zhang, Y. Yamaoka, P. Gao, H. Kim, J. U. Hwang, M. C. Suh, B. Kang, and Y. Lee. 2021. Arabidopsis seedling establishment under waterlogging requires ABCG5-mediated formation of a dense cuticle layer. The New Phytologist 229 (1):156–72. doi:10.1111/nph.16816.
   PubMed Web of Science ®Google Scholar
• Lin, C. C., Y. T. Chao, W. C. Chen, H. Y. Ho, M. Y. Chou, Y. R. Li, Y. L. Wu, H. A. Yang, H. Hsieh, C. S. Lin, et al. 2019. Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence. Proceedings of the National Academy of Sciences of the United States of America 116 (8):3300–09. doi:10.1073/pnas.1818507116.
   PubMed Web of Science ®Google Scholar
• Li, W., H. C. Ren, J. Zuo, and H. L. Li Ren. 2018. Early summer southern China rainfall variability and its oceanic drivers. Climate Dynamics 50 (11–12):4691–705. doi:10.1007/s00382-017-3898-0.
   Web of Science ®Google Scholar
• Li, Y., L. C. Shi, J. Yang, Z. H. Qian, Y. X. He, and M. W. Li. 2021. Physiological and transcriptional changes provide insights into the effect of root waterlogging on the aboveground part of pterocarya stenoptera. Genomics 113 (4):2583–90. doi:10.1016/j.ygeno.2021.06.005.
   PubMed Web of Science ®Google Scholar
• Liu, X. Y., H. Na Yu, S. Gao, Y. Feng Wu, A. Xia Cheng, and H. Xiang Lou. 2017. The isolation and functional characterization of three liverwort genes encoding cinnamate 4-hydroxylase. Plant Physiology and Biochemistry 117:42–50. doi:10.1016/j.plaphy.2017.05.016.
   PubMed Web of Science ®Google Scholar
• Liu, C., Z. Xue, D. Tang, Y. Shen, W. Shi, L. Ren, G. Du, Y. Li, and Z. Cheng. 2018. Ornithine δ-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice. The Plant Journal 96 (4):842–54. doi:10.1111/tpj.14072.
   PubMed Web of Science ®Google Scholar
• Liu, L., X. Xu, Y. Hu, Z. Liu, and Z. Qiao. 2018. Efficiency analysis of bioenergy potential on winter fallow fields: A case study of rape. The Science of the Total Environment 628–629:103–09. doi:10.1016/j.scitotenv.2018.02.016.
   PubMed Web of Science ®Google Scholar
• Livak, K. J., and T. D. Schmittgen. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method. Methods 25 (4):402–08.
   PubMed Web of Science ®Google Scholar
• Li, J., T. Xie, Y. Chen, Y. Zhang, C. Wang, Z. Jiang, W. Yang, G. Zhou, L. Guo, J. Zhang, et al. 2022. High-throughput unmanned aerial vehicle-based phenotyping provides insights into the dynamic process and genetic basis of rapeseed waterlogging response in the field. Journal of Experimental Botany 73 (15):5264–78. doi:10.1093/jxb/erac242.
   PubMed Web of Science ®Google Scholar
• Li, T., W. Yuan, Q. S, and J. Shi. 2021. Selection of reference genes for gene expression analysis in liriodendron hybrids’ somatic embryogenesis and germinative tissues. Scientific Reports 11 (1):1–12. doi:10.1038/s41598-021-84518-w.
   PubMed Web of Science ®Google Scholar
• Na, Y., J. Li, Z. Han, C. Min, and Y. Shen. 2018. Research Progress of Jasmonate- Responsive Transcription Factors in Regulating Plant Secondary Metabolism 43 (5). doi: 10.19540/j.cnki.cjcmm.20180109.001.
   Google Scholar
• Nielsen, K. L., J. P. Lynch, and H. N. Weiss. 1997. Fractal geometry of bean root systems: Correlations between spatial and fractal dimension. American Journal of Botany 84 (1):26–33. doi:10.2307/2445879.
   PubMed Web of Science ®Google Scholar
• Pang, Z., J. Chen, T. Wang, C. Gao, Z. Li, L. Guo, J. Xu, and Y. Cheng. 2021. Linking plant secondary metabolites and plant microbiomes: A review. Frontiers in Plant Science 12 (March). doi: 10.3389/fpls.2021.621276.
   Google Scholar
• Poitout, A., A. Crabos, I. Petřík, O. Novák, G. Krouk, B. Lacombe, and S. Ruffel. 2018. Responses to systemic nitrogen signaling in Arabidopsis roots involve trans-zeatin in shoots. The Plant Cell 30 (6):1243–57. doi:10.1105/tpc.18.00011.
   PubMed Web of Science ®Google Scholar
• Qi, X., and Z. Zhang. 2022. Assessing the urban road waterlogging risk to propose relative mitigation measures. The Science of the Total Environment 849:157691. doi:10.1016/j.scitotenv.2022.157691.
   PubMed Web of Science ®Google Scholar
• Raineri, J., L. Caraballo, N. Rigalli, M. Portapila, M. Elena Otegui, and R. Lía Chan. 2022. Expressing the sunflower transcription factor HaHB11 in maize improves waterlogging and defoliation tolerance. Plant Physiology 189 (1):230–47. doi:10.1093/plphys/kiac054.
   PubMed Web of Science ®Google Scholar
• Rao, G. S., P. Deveshwar, M. Sharma, S. Kapoor, and K. Venkateswara Rao. 2018. Evolvement of transgenic male-sterility and fertility-restoration system in rice for production of hybrid varieties. Plant Molecular Biology 96 (1–2):35–51. doi:10.1007/s11103-017-0678-5.
   PubMed Web of Science ®Google Scholar
• Rozhmina, T., A. Samsonova, A. Kanapin, and M. Samsonova. 2022. An account of fusarium wilt resistance in flax Linum usitatissimum: The disease severity data. Data in Brief 41:107869. doi:10.1016/j.dib.2022.107869.
   PubMed Web of Science ®Google Scholar
• Shuqiao, L. 2020. Southern China sees abnormally heavier rainfall season in 2020. China Meteorological News Press 2020: 07–27.
   Google Scholar
• Smykalova, I., M. Vrbova, E. Tejklova, M. Vetrovcova, and M. Griga. 2010. Large scale screening of heavy metal tolerance in flax/linseed (Linum usitatissimum L.) tested in vitro. Industrial Crops and Products 32 (3):527–33. doi:10.1016/j.indcrop.2010.06.027.
   Web of Science ®Google Scholar
• Ullah, I., B. Oudh Al-Johny, K. M. S. AL-Ghamdi, H. A. A. Al-Zahrani, Y. Anwar, A. Firoz, N. AL-Kenani, and M. Ali Ahmed Almatry. 2019. Endophytic bacteria isolated from Solanum nigrum L., alleviate cadmium (Cd) stress response by their antioxidant potentials, including SOD synthesis by SodA gene. Ecotoxicology and Environmental Safety 174 (September 2018):197–207. doi:10.1016/j.ecoenv.2019.02.074.
   PubMedGoogle Scholar
• Wang, A. F., M. Roitto, T. Lehto, S. Sutinen, J. Heinonen, G. Zhang, and T. Repo. 2017. Photosynthesis, nutrient accumulation and growth of two Betula species exposed to waterlogging in late dormancy and in the early growing season. Tree Physiology 37 (6):767–78. doi:10.1093/treephys/tpx021.
   PubMed Web of Science ®Google Scholar
• Wang, X., M. Wah Li, F. Ling Wong, C. Yee Luk, C. Yik Lok Chung, W. Shing Yung, Z. Wang, M. Xie, S. Song, G. Chung, et al. 2021. Increased copy number of gibberellin 2-oxidase 8 genes reduced trailing growth and shoot length during soybean domestication. The Plant Journal 107 (6):1739–55. doi:10.1111/tpj.15414.
   PubMed Web of Science ®Google Scholar
• Wolf, A. J., C. N. Reyes, W. Liang, C. Becker, K. Shimada, M. L. Wheeler, H. Cheol Cho, N. I. Popescu, K. Mark Coggeshall, M. Arditi, et al. 2016. Hexokinase is an innate immune receptor for the detection of bacterial peptidoglycan. Cell 166 (3):624–36. doi:10.1016/j.cell.2016.05.076.
   PubMed Web of Science ®Google Scholar
• Wu, Z., J. Luo, Y. Han, Y. Hua, C. Guan, and Z. Zhang. 2019. Low nitrogen enhances nitrogen use efficiency by triggering NO₃− uptake and its long-distance translocation. Journal of Agricultural and Food Chemistry 67 (24):6736–47. doi:10.1021/acs.jafc.9b02491.
   PubMed Web of Science ®Google Scholar
• Wu, L. Y., Z. Tao Fang, J. Ke Lin, Y. Sun, Z. Zheng Du, Y. Ling Guo, J. Hong Liu, Y. Rong Liang, and J. Hui Ye. 2019. Complementary ITRAQ proteomic and transcriptomic analyses of leaves in tea plant (Camellia sinensis L.) with different maturity and regulatory network of flavonoid biosynthesis. Journal of Proteome Research 18 (1):252–64. doi:10.1021/acs.jproteome.8b00578.
   PubMed Web of Science ®Google Scholar
• Wu, Z., L. Yang, L. Jiang, Z. Zhang, H. Song, X. Rong, and Y. Han. 2019. Low concentration of exogenous ethanol promoted biomass and nutrient accumulation in oilseed rape (Brassica napus L.). Plant Signaling & Behavior 14 (12):1–7. doi:10.1080/15592324.2019.1681114.
   Web of Science ®Google Scholar
• Xiao, M. 2018. Summary of flood disaster in China in 2017. Flood and Drought Disaster 28 (8):60–66. doi:10.16867/j.issn.1673-9264.2018135.
   Google Scholar
• Xin, D., Q. Caisheng, C. Xinbo, L. Songhua, G. Yuan, H. Dongmei, and W. Yufu. 2014. Influence of potassium fertilizer on lodging resistance of flax b Linum usitatissimum L. Y. Plant Fiber Sciences in China 36 (4):4–8.
   Google Scholar
• Xiong, D., S. Lu, J. Wu, C. Liang, W. Wang, W. Wang, J. Ming Jin, and S. Yan Tang. 2017. Improving key enzyme activity in phenylpropanoid pathway with a designed biosensor. Metabolic Engineering 40 (11):115–23. doi:10.1016/j.ymben.2017.01.006.
   PubMedGoogle Scholar
• Xun, Z., X. Guo, L. Yaling, X. Wen, C. Wang, and Y. Wang. 2020. Quantitative proteomics analysis of tomato growth inhibition by ammonium nitrogen. Plant Physiology and Biochemistry 154:129–41. doi:10.1016/j.plaphy.2020.05.036.
   PubMed Web of Science ®Google Scholar
• Yuan, W., D. L. Tuttle, Y. Jiang Shi, G. S. Ralph, and W. A. Dunn. 1997. Glucose-induced microautophagy in pichia pastoris requires the α-subunit of phosphofructokinase. Journal of Cell Science 110 (16):1935–45. doi:10.1242/jcs.110.16.1935.
   PubMedGoogle Scholar
• Yu, J., N. Fan, R. Li, L. Zhuang, Q. Xu, and B. Huang. 2019. Proteomic profiling for metabolic pathways involved in interactive effects of elevated carbon dioxide and nitrogen on leaf growth in a perennial grass species. Journal of Proteome Research 18 (6):2446–57. doi:10.1021/acs.jproteome.8b00951.
   PubMed Web of Science ®Google Scholar
• Zhang, X., X. Ding, Y. Ji, S. Wang, Y. Chen, J. Luo, Y. Shen, and L. Peng. 2018. Measurement of metabolite variations and analysis of related gene expression in Chinese liquorice (Glycyrrhiza uralensis) plants under UV-B irradiation. Scientific Reports 8 (1):1–17. doi:10.1038/s41598-018-24284-4.
   PubMed Web of Science ®Google Scholar
• Zhang, X., Z. Xue, D. Hao, C. Qiu, H. Huang, and Y. Wang. 2007. Primary research on the physiological mechanisms of flax in waterlogging stress. Plant Fiber Sciences in China 2007 (03):169–72.
   Google Scholar