841
Views
0
CrossRef citations to date
0
Altmetric
Research Paper

Habitat ecological characteristics and soil fungal community structure of Paphiopedilum subgenus Brachypetalum Hallier (Orchidaceae) plants in Southwest China

, , , &
Article: 2227365 | Received 12 Mar 2023, Accepted 02 May 2023, Published online: 28 Jun 2023

References

  • Cozzolino S, Widmer A. Orchid diversity: an evolutionary consequence of deception? Trends Ecol Evol. 2005;20(9):487–14. doi:10.1016/j.tree.2005.06.004.
  • Vishwakarma SK, Singh N, Kumaria S. Genome-wide identification and analysis of the PAL genes from the orchids apostasia shenzhenica, dendrobium catenatum and PHALAENOPSIS EQuestris. J Biomol Struct Dyn. 2021;41(4):1–14. doi:10.1080/07391102.2021.2019120.
  • Zhang S, Yang Y, Li J, Qin J, Zhang W, Huang W, Hu H. Physiological diversity of orchids. Plant Divers. 2018;40(4):196–208. doi:10.1016/j.pld.2018.06.003.
  • Vladan D, Spyros T, Dmitar L, Jovanović S, Jakovljević K, Stevanović V. Patterns of distribution, abundance and composition of forest terrestrial orchids. Biodivers Conserv. 2020;29(14):4111–4134. doi:10.1007/s10531-020-02067-6.
  • Waterman RJ, Bidartondo MI. Deception above, deception below: linking pollination and mycorrhizal biology of orchids. J Exp Bot. 2008;59(5):1085–1096. doi:10.1093/jxb/erm366.
  • Chengru L, Na D, Yamei Z, Wu S, Liu Z, Zhai J. A review for the breeding of orchids: current achievements and prospects. Hortic Plant J. 2021;7(5):380–392. doi:10.1016/j.hpj.2021.02.006.
  • Yan L, Wang X, Liu H, Tian Y, Lian J, Yang R, Hao S, Wang X, Yang S, Li Q, et al. The genome of Dendrobium officinale illuminates the biology of the important traditional Chinese orchid herb. Mol Plant. 2015;8(6):922–934. doi:10.1016/j.molp.2014.12.011.
  • Y GY, B LY, J LZ, Wang X-Q. Evolution and biogeography of the slipper orchids: Eocene vicariance of the conduplicate genera in the old and new world tropics. PLoS One. 2012;7(6):e38788. doi:10.1371/journal.pone.0038788.
  • Wen-Ke Y, Tai-Qiang L, Shi-Mao W, Finnegan PM, Gao J-Y. Ex situ seed baiting to isolate germination-enhancing fungi for assisted colonization in Paphiopedilum spicerianum, a critically endangered orchid in China. Global Ecol Conserv. 2020;23:e01147. doi:10.1016/j.gecco.2020.e01147.
  • J GZ, B ZS, Y GK, Li S-Y, Hu H. Leaf anatomical structures of Paphiopedilum and Cypripedium and their adaptive significance. J Plant Res. 2011;124(2):289–298. doi:10.1007/s10265-010-0372-z.
  • Yuan L, Yang ZL, Li SY, Hu H, Huang JL. Mycorrhizal specificity, preference, and plasticity of six slipper orchids from South Western China. Mycorrhiza. 2010;20(8):559–568. doi:10.1007/s00572-010-0307-5.
  • Feng JQ, Huang W, Wang JH, Zhang SB. Different strategies for photosynthetic regulation under fluctuating light in two sympatric Paphiopedilum species. Cells. 2021;10(6):1451. doi:10.3390/cells10061451.
  • Zeng S, Huang W, Wu K, Zhang J, da Silva JAT, Duan J. In vitro propagation of Paphiopedilum orchids. Crit Rev Biotechnol. 2016;36(3):521–534. doi:10.3109/07388551.2014.993585.
  • Nontachaiyapoom S, Sasirat S, Manoch L. Isolation and identification of Rhizoctonia-like fungi from roots of three orchid genera Paphiopedilum, Dendrobium, And Cymbidium, Collected In Chiang Rai And Chiang Mai Provinces Of Thailand[j]. Mycorrhiza. 2010;20(7):459–471. doi:10.1007/s00572-010-0297-3.
  • C YP, Wu J, An M, Chen H, Zhao X, Jin X, Si Q. Geographical distribution and relationship with environmental factors of Paphiopedilum subgenus Brachypetalum Hallier (Orchidaceae) Taxa in Southwest China. Diversity. 2021;13(12):634. doi:10.3390/d13120634.
  • Liang L, Kangning X. Study on peak cluster-depression rocky desertification landscape evolution and human activity-influence in South of China. Eur J Remote Sens. 2020;54(2):309–317. doi:10.1080/22797254.2020.1777588.
  • Bao SD. Agrochemical analysis of soil [M]. China: China Agriculture Press; 2000.
  • Dai M, Hamel C, D BL, Arnaud MS, Grant CA, Lupwayi NZ, Malhi SS, Lemke R. Negative and positive contributions of arbuscular mycorrhizal fungal taxa to wheat production and nutrient uptake efficiency in organic and conventional systems in the Canadian prairie. Soil Biol Biochem. 2014;74:156–166. doi:10.1016/j.soilbio.2014.03.016.
  • De Beenhouwer M, Van Geel M, Ceulemans T, Muleta D, Lievens B, Honnay O. Changing soil characteristics alter the arbuscular mycorrhizal fungi communities of Arabica coffee (Coffea arabica) in Ethiopia across a management intensity gradient. Soil Biol Biochem. 2015;91:133–139. doi:10.1016/j.soilbio.2015.08.037.
  • Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114–2120. doi:10.1093/bioinformatics/btu170.
  • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet Journal. 2011;17(1):10–12. doi:10.14806/ej.17.1.200.
  • Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10(10):996–998. doi:10.1038/nmeth.2604.
  • C ER, J HB, C CJ, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (Oxford, England). 2011;27(16):2194–2200. doi:10.1093/bioinformatics/btr381.
  • Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12(6):1–18. doi:10.1186/gb-2011-12-6-r60.
  • Jacquemyn H, Waud M, Brys R, Lallemand F, Courty PE, Robionek A, Selosse MA. Mycorrhizal associations and trophic modes in coexisting orchids: an ecological continuum between auto- and mixotrophy. Front Plant Sci. 2017;8:1497. doi:10.3389/fpls.2017.01497.
  • Pei J, Yang W, Cai Y, Yi Y, Li X. Relationship between Vegetation and environment in an arid-hot valley in Southwestern China. Sustainability. 2018;10(12):4774. doi:10.3390/su10124774.
  • Sinan L, Xiaoqing Z, Junwei P, Miao P, Wang Q, Tan K. Optimize and control territorial spatial functional areas to improve the ecological stability and total environment in karst areas of Southwest China. Land Use Policy. 2021;100:104940. doi:10.1016/j.landusepol.2020.104940.
  • Tsai CC, Liao PC, Ko YZ, Chen CH, Chiang YC. Phylogeny and historical biogeography of paphiopedilum pfitzer (Orchidaceae) based on nuclear and plastid DNA. Front Plant Sci. 2020;11:126. doi:10.3389/fpls.2020.00126.
  • Meng Z, Qi F, Yanyan Q, Cao J, Zhang M, Liu W, Deo RC, Zhang C, Li R, Li B, et al. The role of topography in shaping the spatial patterns of soil organic carbon. Catena. 2019;176:296–305. doi:10.1016/j.catena.2019.01.029.
  • Li Y, Xiong K, Liu Z, Li K, Luo D. Distribution and influencing factors of soil organic carbon in a typical karst catchment undergoing natural restoration. Catena. 2022;212:106078. doi:10.1016/j.catena.2022.106078.
  • A GT, D SS, J MA, Jeong J, Hamilton DP. Terrain effects on the spatial variability of soil physical and chemical properties. Soil Systems. 2019;4(1):1. doi:10.3390/soilsystems4010001.
  • Wiesmeier M, Urbanski L, Hobley E, Lang B, von Lützow M, Marin-Spiotta E, van Wesemael B, Rabot E, Ließ M, Garcia-Franco N, et al. Soil organic carbon storage as a key function of soils - a review of drivers and indicators at various scales. Geoderma. 2019;333:149–162. doi:10.1016/j.geoderma.2018.07.026.
  • Shen C, Wang J, Z HJ, Yu F-H, Ge Y. Plant diversity enhances soil fungal diversity and microbial resistance to plant invasion. Appl Environ Microbiol. 2021;87(11):e00251–21. doi:10.1128/AEM.00251-21.
  • Ning H, Hui L, Zheng T, Li Z, Li G, Jiang Y, Hu X, Lou Y. Community size, activity and C: n stoichiometry of soil microorganisms following reforestation in a Karst region. Eur J Soil Biol. 2016;73:77–83. doi:10.1016/j.ejsobi.2016.01.007.
  • Wang Y, Li S, Lang X, Huang X, Su J. Effects of microtopography on soil fungal community diversity, composition, and assembly in a subtropical monsoon evergreen broadleaf forest of Southwest China. Catena. 2022;211:106025. doi:10.1016/j.catena.2022.106025.
  • Herrera H, I GR, Meneses C, Pereira G, Arriagada C. Orchid mycorrhizal interactions on the pacific side of the Andes from Chile. a review. J Soil Sci Plant Nutr. 2019;19:187–202. doi:10.1007/s42729-019-00026-x.
  • Izuddin M, Srivathsan A, L LA, Yam TW, Webb EL. Availability of orchid mycorrhizal fungi on roadside trees in a tropical urban landscape. Sci Rep. 2019;9(1):19528. doi:10.1038/s41598-019-56049-y.
  • Jaspreet K, Caleb P, Jyotsna S. Host population size is linked to orchid mycorrhizal fungal communities in roots and soil, which are shaped by microenvironment. Mycorrhiza. 2020;31(1):17–30. doi:10.1007/s00572-020-00993-5.
  • Yeh CM, Chung K, Liang CK, Tsai WC. New insights into the symbiotic relationship between orchids and fungi. Appl Sci. 2019;9(3):585. doi:10.3390/app9030585.
  • Daniel AB, Linda JJ, Stuart DC. Symbiotic bacteria of plant-associated fungi: friends or foes? Curr Opin Plant Biol. 2020;56:1–8. doi:10.1016/j.pbi.2019.10.010.
  • Yuan-Yuan M, Xu-Li F, Lv-Rong Z, Shao S-C, Liu Q, Selosse M-A, Gao J-Y. Symbiotic fungi undergo a taxonomic and functional bottleneck during orchid seeds germination: a case study on Dendrobium moniliforme. Symbiosis. 2019;79:205–212. doi:10.1007/s13199-019-00647-x.
  • J RD, G DJ, Francis R, Ligrone R, Russell A. Symbiotic fungal associations in ‘lower’ land plants. Philosophical transactions of the royal society of London. Series B Biol Sci. 2000;355(1398):815–831. doi:10.1098/rstb.2000.0617.
  • Davide F, R SQV, Jasper VR, Termorshuizen AJ, Cotton TEA, Dumbrell AJ, Raaijmakers JM, Weigelt A, Mommer L. Plant functional group drives the community structure of saprophytic fungi in a grassland biodiversity experiment. Plant Soil. 2020;461(1–2):91–105. doi:10.1007/s11104-020-04454-y.
  • García-Garrido JM, Ocampo JA. Regulation of the plant defence response in arbuscular mycorrhizal symbiosis. J Exp Bot. 2002;53(373):1377–1386. doi:10.1093/jxb/53.373.1377.
  • John NK. Variation in plant response to native and exotic arbuscular mycorrhizal fungi. Ecology. 2003;84(9):2292–2301. doi:10.1890/02-0413.
  • Antoine S, Hériché M, Boussageon R, Noceto P-A, van Tuinen D, Wipf D, Courty PE. A historical perspective on mycorrhizal mutualism emphasizing arbuscular mycorrhizas and their emerging challenges. Mycorrhiza. 2021;31(6):1–17. doi:10.1007/s00572-021-01053-2.
  • Monika R, Zofia P. Prospects for arbuscular mycorrhizal fungi (AMF) to assist in phytoremediation of soil hydrocarbon contaminants. Chemosphere. 2016;162:105–116. doi:10.1016/j.chemosphere.2016.07.071.
  • Ai YJ, Li FP, Yang JQ, Lu S, Gu HH. Research progress and potential functions of AMF and GRSP in the ecological remediation of metal tailings. Sustainability. 2022;14(15):9611. doi:10.3390/su14159611.
  • Naheeda B, A MA, Yunyun S, Lei Y, Mustafa NSA, Ahmad P, Zhang L. Improved drought tolerance by AMF inoculation in Maize (Zea mays) involves physiological and biochemical implications. Plants. 2019;8(12):579. doi:10.3390/plants8120579.
  • Xiao D, He X, Zhang W, Cheng M, Hu P, Wang K. Diazotroph and arbuscular mycorrhizal fungal diversity and community composition responses to karst and non-karst soils. Appl Soil Ecol. 2022;170:104227. doi:10.1016/j.apsoil.2021.104227.
  • Xiao D, Chen Y, He X, Xu Z, Bai SH, Zhang W, Wang K. Temperature and precipitation significantly influence the interactions between arbuscular mycorrhizal fungi and diazotrophs in karst ecosystems. For Ecol Manage. 2021;497:119464. doi:10.1016/j.foreco.2021.119464.
  • Suryanarayanan TS, Shaanker RU. Can fungal endophytes fast-track plant adaptations to climate change? Fungal Ecol. 2021;50:101039. doi:10.1016/j.funeco.2021.101039.
  • Shi Y, Zhang K, Li Q, Liu X, He J-S, Chu H. Interannual climate variability and altered precipitation influence the soil microbial community structure in a Tibetan Plateau grassland. Sci Total Environ. 2019;714:136794. doi:10.1016/j.scitotenv.2020.136794.
  • Jacquemyn H, Waud M, Merckx VS, Lievens B, Brys R. Mycorrhizal diversity, seed germination and long-term changes in population size across nine populations of the terrestrial orchid Neottia ovata. Mol Ecol. 2015;24(13):3269–3280. doi:10.1111/mec.13236.
  • K SS, Davison J, Jairus T, Vasar M, Moora M, Zobel M, Öpik M. Non-random association patterns in a plant–mycorrhizal fungal network reveal host–symbiont specificity. Mol Ecol. 2018;28(2):365–378. doi:10.1111/mec.14924.
  • J TY, Y ZD, Dai J, Li Y, Xing Y-M, Guo S-X, Chen J. Potential specificity between mycorrhizal fungi isolated from Widespread Dendrobium spp. and Rare D. huoshanense seeds. Curr Microbiol. 2022;79(9). doi:10.1007/s00284-022-02952-z.
  • Xue PP, Carrillo Y, Pino V, Minasny B, McBratney AB. Soil properties drive microbial community structure in a large scale transect in South Eastern Australia. Sci Rep. 2018;8(1):11725. doi:10.1038/s41598-018-30005-8.
  • Qi D, Wieneke X, Xue P, He L, DeSilva U. Total nitrogen is the main soil property associated with soil fungal community in karst rocky desertification regions in southwest China. Sci Rep. 2021;11(1):1–12. doi:10.1038/s41598-021-89448-1.
  • Yongchun L, Yongfu L, C SX, Liang X, Qin H, Chen J, Xu Q. Linking soil fungal community structure and function to soil organic carbon chemical composition in intensively managed subtropical bamboo forests. Soil Biol Biochem. 2017;107:19–31. doi:10.1016/j.soilbio.2016.12.024.
  • Hussnain M, Chiao-Ming L, W RF, Cheng L-C, Ko M-C, Lin Y-P. Climate and land cover shape the fungal community structure in topsoil. Sci Total Environ. 2021;751:141721. doi:10.1016/j.scitotenv.2020.141721.