811
Views
0
CrossRef citations to date
0
Altmetric
AC-Microbiome Modulators and Oral Health

Ultrasmall epibiont Nanosynbacter lyticus strain TM7x and host bacteria transcriptional activity after initial host parasitism

, , , , , & show all
Article: 2287349 | Received 29 Sep 2023, Accepted 20 Nov 2023, Published online: 30 Nov 2023

References

  • He X, McLean JS, Edlund A, et al. Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle. Proc Natl Acad Sci U S A. 2015;112:244–15. doi: 10.1073/pnas.1419038112
  • McLean JS, Liu Q, Bor B, et al. Draft genome sequence of Actinomyces odontolyticus subsp. actinosynbacter strain XH001, the basibiont of an oral TM7 epibiont. Genome Announc. 2016;4:e01685–15. doi: 10.1128/genomeA.01685-15
  • Bor B, McLean JS, Foster KR, et al. Rapid evolution of decreased host susceptibility drives a stable relationship between ultrasmall parasite TM7x and its bacterial host. Proc Natl Acad Sci U S A. 2018;115:12277–12282. doi: 10.1073/pnas.1810625115
  • Xiea B, Wanga J, Niec Y, et al. Type IV pili trigger episymbiotic association of Saccharibacteria with its bacterial host. Proc Natl Acad Sci U S A. 2022;119:e2215990119. doi: 10.1073/pnas.2215990119
  • Brown CT, Hug LA, Thomas BC, et al. Unusual biology across a group comprising more than 15% of domain bacteria. Nature. 2015;523:208–211. doi: 10.1038/nature14486
  • Castelle CJ, Banfield JF. Major new microbial groups expand diversity and alter our understanding of the tree of life. Cell. 2018;172:1181–1197. doi: 10.1016/j.cell.2018.02.016
  • McLean JS, Bor B, Kerns KA, et al. Acquisition and adaptation of ultra-small parasitic reduced genome bacteria to mammalian hosts. Cell Rep. 2020;32:107939. doi: 10.1016/j.celrep.2020.107939
  • Jaffe AL, Thomas AD, He C, et al. Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in Candidate Phyla Radiation bacteria. MBio. 2021;12(4):e0052121. doi: 10.1128/mBio.00521-21
  • Bor B, Collins AJ, Murugkar PP, et al. Insights obtained by culturing Saccharibacteria with their bacterial hosts. J Dent Res. 2020;99:685–694. doi: 10.1177/0022034520905792
  • Lamont EI, Hendrickson EL, McLean JS, et al. Complete genome sequence of strain BB001, a novel epibiont bacterium from the candidate phylum Saccharibacteria (TM7). Microbiol Resour Announc. 2020;9(34). doi: 10.1128/MRA.00810-20
  • Hendrickson EL, Bor B, Kerns KA, et al. Transcriptome of epibiont Saccharibacteria Nanosynbacter lyticus strain TM7x during the establishment of symbiosis. J Bacteriol. 2022;204(9):e0011222. doi: 10.1128/jb.00112-22
  • Bor B, Poweleit N, Bois JS, et al. Phenotypic and physiological characterization of the epibiotic interaction between TM7x and its basibiont Actinomyces. Microb Ecol. 2016;71:243–255. doi: 10.1007/s00248-015-0711-7
  • Utter DR, He X, Cavanaugh CM, et al. The saccharibacterium TM7x elicits differential responses across its host range. Isme J. 2020;14:3054–3067. doi: 10.1038/s41396-020-00736-6
  • Bushnell B (2020) BBDuk. Jt Genome Inst Available online: https://jgidoegov/data-and-tools/bbtools/bb-tools-userguide/bbduk-guide/(accessed on 25 June 2020).
  • Powell DR. Degust: interactive RNA-seq analysis. doi: 10.5281/zenodo.3258932
  • Ritchie ME, Phipson B, Wu D, et al. Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43:e47. doi: 10.1093/nar/gkv007
  • Huerta-Cepas J, Szklarczyk D, Heller D, et al. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res. 2019;47:D309–D314. doi: 10.1093/nar/gky1085
  • Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28(1):27–30. doi: 10.1093/nar/28.1.27
  • Kanehisa M, Furumichi M, Sato Y, et al. KEGG: integrating viruses and cellular organisms. Nucleic Acids Res. 2021;49(D1):D545–D551. doi: 10.1093/nar/gkaa970
  • Haeussen DP, Levin PA. The great divide: coordinating cell cycle events during bacterial growth and division. Curr Opin Microbiol. 2008;11(2):94–99. doi: 10.1016/j.mib.2008.02.008
  • Tian J, Utter DR, Cen L, et al. Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment. Proc Natl Acad Sci U S A. 2022;119(2):119 e2114909119. doi: 10.1073/pnas.2114909119
  • Edgar R, Domrachev M, Lash AE. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002;30(1):207–210. doi: 10.1093/nar/30.1.207