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Research Article

Characterization of pathogenic microbiome on removable prostheses with different levels of cleanliness using 2bRAD-M metagenomic sequencing

ORCID Icon, , , , & ORCID Icon
Article: 2317059 | Received 26 Sep 2023, Accepted 03 Feb 2024, Published online: 22 Feb 2024

References

  • Gendreau L, Loewy ZG. Epidemiology and etiology of denture stomatitis. J Prosthodont. 2011;20:251–12. doi: 10.1111/j.1532-849X.2011.00698.x
  • da Fonte Porto Carreiro A, de Carvalho Dias K, Correia Lopes AL, et al. Periodontal conditions of abutments and non‐abutments in removable partial dentures over 7 years of use. J Prosthodont. 2017;26:644–649. doi: 10.1111/jopr.12449
  • Yeung A, Lo E, Chow T, et al. Oral health status of patients 5–6 years after placement of cobalt–chromium removable partial dentures. J Oral Rehabil. 2000;27:183–189. doi: 10.1046/j.1365-2842.2000.00512.x
  • Yen Y-Y, Lee H-E, Wu Y-M, et al. Impact of removable dentures on oral health-related quality of life among elderly adults in Taiwan. BMC Oral Health. 2015;15(1):1–12. doi: 10.1186/1472-6831-15-1
  • Mysak J, Podzimek S, Sommerova P, et al. Porphyromonas gingivalis: Major periodontopathic pathogen overview. J Immunol Res. 2014;2014:476068. doi: 10.1155/2014/476068
  • Hicks J, Garcia-Godoy F, Flaitz C. Biological factors in dental caries: role of saliva and dental plaque in the dynamic process of demineralization and remineralization (part 1). J Clin Pediatr Dent. 2004;28:47–52. doi: 10.17796/jcpd.28.1.yg6m443046k50u20
  • Redfern J, Tosheva L, Malic S, et al. The denture microbiome in health and disease: an exploration of a unique community. Lett Appl Microbiol. 2022;75:195–209. doi: 10.1111/lam.13751
  • O’Donnell LE, Robertson D, Nile CJ, et al. The oral microbiome of denture wearers is influenced by levels of natural dentition. PLoS One. 2015;10(9):e0137717. doi: 10.1371/journal.pone.0137717
  • Delaney C, O’Donnell LE, Kean R, et al. Interkingdom interactions on the denture surface: implications for oral hygiene. Biofilm. 2019;1:100002. doi: 10.1016/j.bioflm.2019.100002
  • Coco B, Bagg J, Cross L, et al. Mixed Candida albicans and Candida glabrata populations associated with the pathogenesis of denture stomatitis. Oral Microbiol Immunol. 2008;23:377–383. doi: 10.1111/j.1399-302X.2008.00439.x
  • Coulthwaite L, Verran J. Potential pathogenic aspects of denture plaque. Br J Biomed Sci. 2007;64:180–189. doi: 10.1080/09674845.2007.11732784
  • D’Ambrosio F, Santella B, Di Palo MP, et al. Characterization of the oral microbiome in wearers of fixed and removable implant or non-implant-supported prostheses in healthy and pathological oral conditions: a narrative review. Microorganisms. 2023;11:1041. doi: 10.3390/microorganisms11041041
  • Monteiro DR, de Souza Batista VE, Caldeirão ACM, et al. Oral prosthetic microbiology: aspects related to the oral microbiome, surface properties, and strategies for controlling biofilms. Biofouling. 2021;37(4):353–371. doi: 10.1080/08927014.2021.1912741
  • Verran J, Jackson S, Coulthwaite L, et al. The effect of dentifrice abrasion on denture topography and the subsequent retention of microorganisms on abraded surfaces. J Prosthet Dent. 2014;112:1513–1522. doi: 10.1016/j.prosdent.2014.05.009
  • O’Donnell LE, Smith K, Williams C, et al. Dentures are a reservoir for respiratory pathogens. J Prosthodont. 2016;25:99–104. doi: 10.1111/jopr.12342
  • Glass RT, Bullard JW, Hadley C, et al. Partial spectrum of microorganisms found in dentures and possible disease implications. J Am Osteopath Assoc. 2001;101(2):92–94.
  • Tavares M, Calabi KAL, San Martin L. Systemic diseases and oral health. Dent Clin North Am. 2014;58:797–814. doi: 10.1016/j.cden.2014.07.005
  • Kondo Y, Sato K, Nagano K, et al. Involvement of PorK, a component of the type IX secretion system, in Prevotella melaninogenica pathogenicity. Microbiol Immunol. 2018;62:554–566. doi: 10.1111/1348-0421.12638
  • Rodríguez-Medina N, Barrios-Camacho H, Duran-Bedolla J, et al. Klebsiella variicola: an emerging pathogen in humans. Emerg Microbes Infect. 2019;8:973–988. doi: 10.1080/22221751.2019.1634981
  • Kosikowska U, Andrzejczuk S, Grywalska E, et al. Prevalence of susceptibility patterns of opportunistic bacteria in line with CLSI or EUCAST among Haemophilus parainfluenzae isolated from respiratory microbiota. Sci Rep. 2020;10:11512. doi: 10.1038/s41598-020-68161-5
  • Ryan MP, Adley CC. Ralstonia spp.: emerging global opportunistic pathogens. Eur J Clin Microbiol Infect Dis. 2014;33(3):291–304. doi: 10.1007/s10096-013-1975-9
  • Lim TW, Li KY, Burrow MF, et al. Prevalence of respiratory pathogens colonizing on removable dental prostheses in healthy older adults: a systematic review and meta-analysis. J Prosthodont. 2023;1–10. doi: 10.1111/jopr.13802
  • Lanspa MJ, Jones BE, Brown SM, et al. Mortality, morbidity, and disease severity of patients with aspiration pneumonia. J Hosp Med. 2013;8:83–90. doi: 10.1002/jhm.1996
  • Badawi M, Nada M, Kadry S. The effect of polishing the fitting surface of maxillary denture on denture plaque accumulation. Egypt Dent J. 1986;32(4):303–314.
  • Yamauchi M, Yamamoto K, Wakabayashi M, et al. In vitro adherence of microorganisms to denture base resin with different surface texture. Dent Mater J. 1990;9(1):19–24. doi: 10.4012/dmj.9.19
  • Venkataraman A, Bassis CM, Beck JM, et al. Application of a neutral community model to assess structuring of the human lung microbiome. MBio. 2015;6(1):e02284–14. doi: 10.1128/mBio.02284-14
  • Maller U, Karthik K, Maller S. Candidiasis in denture wearers-a literature review. JIADS. 2010;1:27–30.
  • Barbeau J, Séguin J, Goulet JP, et al. Reassessing the presence of Candida albicans in denture-related stomatitis. Oral Surg, Oral Med Oral Pathol Oral Radiol Endod. 2003;95:51–59. doi: 10.1067/moe.2003.44
  • Pereira CA, Toledo BC, Santos CT, et al. Opportunistic microorganisms in individuals with lesions of denture stomatitis. Diagn Microbiol Infect Dis. 2013;76(4):419–424. doi: 10.1016/j.diagmicrobio.2013.05.001
  • Koba C, Koga C, Cho T, et al. Determination of candida species nestled in denture fissures. Biomed Rep. 2013;1:529–533. doi: 10.3892/br.2013.112
  • Sun Z, Huang S, Zhu P, et al. Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M. Genome Biol. 2022;23(1):1–22. doi: 10.1186/s13059-021-02576-9
  • Sun Z, Liu X, Jing G, et al. Comprehensive understanding to the public health risk of environmental microbes via a microbiome-based index. J Genet Genomics. 2022;49(7):685–688. doi: 10.1016/j.jgg.2021.12.011
  • Lax S, Sangwan N, Smith D, et al. Bacterial colonization and succession in a newly opened hospital. Sci Transl Med. 2017;9(391):eaah6500. doi: 10.1126/scitranslmed.aah6500
  • Lam T, Chew D, Zhao H, et al. Species-resolved metagenomics of kindergarten microbiomes reveal microbial admixture within sites and potential microbial hazards. Front Microbiol. 2022;13:871017. doi: 10.3389/fmicb.2022.871017
  • Sun Z, Huang S, Zhu P, et al. A microbiome-based index for assessing skin health and treatment effects for atopic dermatitis in children. mSystems. 2019;4(4):e00293–19. doi: 10.1128/mSystems.00293-19
  • Oh H-S, Min U, Jang H, et al. Proposal of a health gut microbiome index based on a meta-analysis of Korean and global population datasets. J Microbiol. 2022;60(5):533–49. doi: 10.1007/s12275-022-1526-0
  • Teng F, Yang F, Huang S, et al. Prediction of early childhood caries via spatial-temporal variations of oral microbiota. Cell Host Microbe. 2015;18(3):296–306. doi: 10.1016/j.chom.2015.08.005
  • Huang S, Li R, Zeng X, et al. Predictive modeling of gingivitis severity and susceptibility via oral microbiota. Isme J. 2014;8:1768–1780. doi: 10.1038/ismej.2014.32
  • Miao J, Han N, Qiang Y, et al. 16SPIP: a comprehensive analysis pipeline for rapid pathogen detection in clinical samples based on 16S metagenomic sequencing. BMC Bioinf. 2017;18(S16):255–259. doi: 10.1186/s12859-017-1975-3
  • Lim TW, Burrow MF, McGrath C. Evaluating risk factors associated with poor removable prosthesis hygiene in community-dwelling elders: a cross-sectional study. J Prosthet Dent. 2023. doi: 10.1016/j.prosdent.2023.09.033
  • Lim TW, Pan H, Pan M, et al. Agreement in quantification of removable prosthesis plaque area coverage using a semi-automated planimetric assessment method. J Dent. 2023;138:104721. doi: 10.1016/j.jdent.2023.104721
  • Ye SH, Siddle KJ, Park DJ, et al. Benchmarking metagenomics tools for taxonomic classification. Cell. 2019;178(4):779–794. doi: 10.1016/j.cell.2019.07.010
  • Anderson MJ. A new method for non-parametric multivariate analysis of variance. Austral Ecol. 2001;26(1):32–46. doi: 10.1046/j.1442-9993.2001.01070.x
  • Farina R, Severi M, Carrieri A, et al. Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-diabetics with different periodontal conditions. Arch Oral Biol. 2019;104:13–23. doi: 10.1016/j.archoralbio.2019.05.025
  • Hajishengallis G, Liang S, Payne MA, et al. Low-abundance biofilm species orchestrates inflammatory periodontal disease through the commensal microbiota and complement. Cell Host Microbe. 2011;10(5):497–506. doi: 10.1016/j.chom.2011.10.006
  • Nikawa H, Hamada T, Yamamoto T. Denture plaque — past and recent concerns. J Dent. 1998;26(4):299–304. doi: 10.1016/S0300-5712(97)00026-2
  • Verma D, Garg PK, Dubey AK. Insights into the human oral microbiome. Arch Microbiol. 2018;200(4):525–540. doi: 10.1007/s00203-018-1505-3
  • Dewhirst FE, Chen T, Izard J, et al. The human oral microbiome. J Bacteriol. 2010;192(19):5002–5017. doi: 10.1128/JB.00542-10
  • Parks DH, Chuvochina M, Rinke C, et al. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. Nucleic Acids Res. 2022;50(D1):D785–94. doi: 10.1093/nar/gkab776
  • Zhu J, Tian L, Chen P, et al. Over 50,000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa. Genomics Proteomics Bioinf. 2022;20(2):246–259. doi: 10.1016/j.gpb.2021.05.001
  • He S, Sun Y, Sun W, et al. Oral microbiota disorder in GC patients revealed by 2b-RAD-M. J Transl Med. 2023;21(1):831. doi: 10.1186/s12967-023-04599-1
  • Campos M, Marchini L, Bernardes L, et al. Biofilm microbial communities of denture stomatitis. Oral Microbiol Immunol. 2008;23:419–424. doi: 10.1111/j.1399-302X.2008.00445.x
  • Fujinami W, Nishikawa K, Ozawa S, et al. Correlation between the relative abundance of oral bacteria and Candida albicans in denture and dental plaques. J Oral Biosci. 2021;63:175–183. doi: 10.1016/j.job.2021.02.003
  • Yitzhaki S, Reshef L, Gophna U, et al. Microbiome associated with denture malodour. J Breath Res. 2018;12:027103. doi: 10.1088/1752-7163/aa95e0
  • Shi C, Cai L, Xun Z, et al. Metagenomic analysis of the salivary microbiota in patients with caries, periodontitis and comorbid diseases. J Dent Sci. 2021;16:1264–1273. doi: 10.1016/j.jds.2020.12.002
  • Banerjee S, Schlaeppi K, van der Heijden MGA. Keystone taxa as drivers of microbiome structure and functioning. Nat Rev Microbiol. 2018;16(9):567–576. doi: 10.1038/s41579-018-0024-1
  • Sun J, Tang Q, Yu S, et al. Role of the oral microbiota in cancer evolution and progression. Cancer Med. 2020;9:6306–6321. doi: 10.1002/cam4.3206
  • Nishi Y, Seto K, Kamashita Y, et al. Examination of denture-cleaning methods based on the quantity of microorganisms adhering to a denture. Gerodontology. 2012;29(2):e259–66. doi: 10.1111/j.1741-2358.2011.00461.x
  • Lee J, Park H, Lee J, et al. Study of bacteria associated with dental caries using a 3 tone disclosing agent. J Korean Acad Pediatr Dent. 2018;45(1):32–40. doi: 10.5933/JKAPD.2018.45.1.32
  • Chan R, Zhang J, McGrath C, et al. A randomized trial of the effectiveness of an ultrasonic denture hygiene intervention program among community dwelling elders. Eur Oral Res. 2023;57:83–89. doi: 10.26650/eor.20231025114
  • Mukai Y, Torii M, Urushibara Y, et al. Analysis of plaque microbiota and salivary proteins adhering to dental materials. J Oral Biosci. 2020;62:182–188. doi: 10.1016/j.job.2020.02.003