256
Views
0
CrossRef citations to date
0
Altmetric
Review Article

Polymicrobial infections with specific Actinomyces and related organisms, using the current taxonomy

ORCID Icon
Article: 2354148 | Received 22 Jan 2024, Accepted 05 May 2024, Published online: 16 May 2024

References

  • Kruse W. Systematik der Streptothricheen und Bakterien. In: Flugge C, editor. Die Mikroorganismen. 3th ed. Vol. 2. Vogel, Leipzig: F.C.M. Vogel; 1896. pp. 48–10.
  • Könönen E, Wade WG. Actinomyces and related organisms in human infections. Clin Microbiol Rev. 2015 Apr;28(2):419–442. doi: 10.1128/CMR.00100-14
  • Russo TA. Agents of actinomycosis. In: Bennett J, Dolin R Blaser M, editors. Mandell, Douglas, and Bennett’s principles and practice of infectious diseases. 9th ed. Vol. 2. Philadelphia: Elsevier Inc; 2020. pp. 3071–3081.
  • Bartlett A, Padfield D, Lear L, Bendall R, Vos M. A comprehensive list of bacterial pathogens infecting humans. Microbiology (Reading). 2022 Dec;168(12). doi: 10.1099/mic.0.001269
  • Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Göker M. Genome-based taxonomic classification of the phylum actinobacteria. Front Microbiol. 2018 Aug 22;9:2007. doi: 10.3389/fmicb.2018.02007
  • Oren A, Garrity GM. Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol. 2021 Oct;71(10). doi: 10.1099/ijsem.0.005056
  • Oren A, Garrity GM. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol. 2018 Nov;68(11):3379–3393. doi: 10.1099/ijsem.0.003071
  • Collins MD, Hoyles L, Kalfas S, et al. Characterization of Actinomyces isolates from infected root canals of teeth: description of Actinomyces radicidentis sp. nov. J Clin Microbiol. 2000 Sep;38(9):3399–3403. doi: 10.1128/JCM.38.9.3399-3403.2000
  • Funke G, Alvarez N, Pascual C, et al. Actinomyces europaeus sp. nov. isolated from human clinical specimens. Int J Syst Bacteriol. 1997 Jul;47(3):687–692. doi: 10.1099/00207713-47-3-687
  • Cato EP, Moore WEC, Nygaard G, et al. Actinomyces meyeri sp. nov. specific epithet rev. Int J Syst Bacteriol. 1984 Oct;34(4):487–489. doi: 10.1099/00207713-34-4-487
  • Funke G, Stubbs S, von Graevenitz A, et al. Assignment of human-derived CDC group 1 coryneform bacteria and CDC group 1-like coryneform bacteria to the genus Actinomyces as Actinomyces neuii subsp. neuii sp. nov. subsp. nov. and Actinomyces neuii subsp. anitratus subsp. nov. Int J Syst Bacteriol. 1994 Jan;44(1):167–171. doi: 10.1099/00207713-44-1-167
  • Li J, Helmerhorst EJ, Leone CW, et al. Identification of early microbial colonizers in human dental biofilm. J Appl Microbiol. 2004;97(6):1311–1318. doi: 10.1111/j.1365-2672.2004.02420.x
  • Sarkonen N, Könönen E, Summanen P, et al. Oral colonization with Actinomyces species in infants by two years of age. J Dent Res. 2000 Mar;79(3):864–867. doi: 10.1177/00220345000790031301
  • Könönen E, Syrjänen R, Takala A, et al. Nasopharyngeal carriage of anaerobes during health and acute otitis media by two years of age. Diagn Microbiol Infect Dis. 2003 Jul;46(3):167–172. doi: 10.1016/s0732-8893(03)00049-x
  • Sarkonen N, Könönen E, Summanen P, et al. Phenotypic identification of Actinomyces and related species isolated from human sources. J Clin Microbiol. 2001 Nov;39(11):3955–3961. doi: 10.1128/JCM.39.11.3955-3961.2001
  • Jensen A, Fagö-Olsen H, Sørensen CH, et al. Molecular mapping to species level of the tonsillar crypt microbiota associated with health and recurrent tonsillitis. PLOS ONE. 2013;8(2):e56418. doi: 10.1371/journal.pone.0056418
  • Vielkind P, Jentsch H, Eschrich K, et al. Prevalence of Actinomyces spp. In patients with chronic periodontitis. Int J Med Microbiol. 2015 Oct;305(7):682–688. doi: 10.1016/j.ijmm.2015.08.018
  • Pei Z, Bini EJ, Yang L, et al. Bacterial biota in the human distal esophagus. Proc Natl Acad Sci USA. 2004 Mar 23;101(12):4250–4255. doi: 10.1073/pnas.0306398101
  • Leal SM Jr, Jones M, Gilligan PH. Clinical significance of commensal gram-positive rods routinely isolated from patient samples. J Clin Microbiol. 2016 Dec;54(12):2928–2936. doi: 10.1128/JCM.01393-16
  • Jeffery-Smith A, Nic-Fhogartaigh C, Millar M, et al. Is the presence of Actinomyces spp. In blood culture always significant? J Clin Microbiol. 2016 Apr;54(4):1137–1139. doi: 10.1128/JCM.03074-15
  • Lynch T, Gregson D, Church DL. Species-level identification of Actinomyces isolates causing invasive infections: multiyear comparison of Vitek MS (matrix-assisted laser desorption ionization-time of flight mass spectrometry) to partial sequencing of the 16S rRNA gene. J Clin Microbiol. 2016 Mar;54(3):712–717. doi: 10.1128/JCM.02872-15
  • Stingu CS, Borgmann T, Rodloff AC, et al. Rapid identification of oral Actinomyces species cultivated from subgingival biofilm by MALDI-TOF-MS. J Oral Microbiol. 2015 Jan 16;7:26110. doi: 10.3402/jom.v7.26110
  • Fong P, Francis MJ, Hamblin JF, et al. Identification and diversity of Actinomyces species in a clinical microbiology laboratory in the MALDI-TOF MS era. Anaerobe. 2018 Dec;54:151–158. doi: 10.1016/j.anaerobe.2018.09.007
  • Ferrand J, Bonnet I, Alauzet C, et al. Evaluation of the Vitek MS and the MALDI Biotyper systems for the identification of less commonly isolated but clinically relevant anaerobes and facultative anaerobes. Anaerobe. 2018 Dec;54:210–216. doi: 10.1016/j.anaerobe.2018.05.014
  • Sabbe LJ, Van De Merwe D, Schouls L, et al. Clinical spectrum of infections due to the newly described Actinomyces species A. turicensis, A. radingae, and A. europaeus. J Clin Microbiol. 1999 Jan;37(1):8–13. doi: 10.1128/JCM.37.1.8-13.1999
  • Hall V, Talbot PR, Stubbs SL, et al. Identification of clinical isolates of Actinomyces species by amplified 16S ribosomal DNA restriction analysis. J Clin Microbiol. 2001 Oct;39(10):3555–3562. doi: 10.1128/JCM.39.10.3555-3562.2001
  • Clarridge JE 3rd, Zhang Q. Genotypic diversity of clinical Actinomyces species: phenotype, source, and disease correlation among genospecies. J Clin Microbiol. 2002 Sep;40(9):3442–3448. doi: 10.1128/JCM.40.9.3442-3448.2002
  • Wüst J, Stubbs S, Weiss N, et al. Assignment of Actinomyces pyogenes-like (CDC coryneform group E) bacteria to the genus Actinomyces as Actinomyces radingae sp. nov. and Actinomyces turicensis sp. nov. Lett Appl Microbiol. 1995 Feb;20(2):76–81. doi: 10.1111/j.1472-765x.1995.tb01290.x
  • Hall V. Actinomyces–gathering evidence of human colonization and infection. Anaerobe. 2008 Feb;14(1):1–7. doi: 10.1016/j.anaerobe.2007.12.001
  • Peaper DR, Havill NL, Aniskiewicz M, Callan D, Pop O, Towle D, Boyce JM, Carroll KC. Pseudo-outbreak of Actinomyces graevenitzii associated with bronchoscopy. J Clin Microbiol. 2015 Jan;53(1):113–117. doi: 10.1128/JCM.02302-14
  • Sato N, Kakuta M, Hasegawa T, et al. Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers. NPJ Biofilms Microbiomes. 2020 Mar 13;6(1):11. doi: 10.1038/s41522-020-0121-6
  • Jang HJ, Lee E, Cho YJ, et al. Subtype-based microbial analysis in non-small cell lung cancer. Tuberc Respir Dis (Seoul). 2023 Oct;86(4):294–303. doi: 10.4046/trd.2022.0149
  • Ren Y, Liang J, Li X, et al. Association between oral microbial dysbiosis and poor functional outcomes in stroke-associated pneumonia patients. BMC Microbiol. 2023 Oct 24;23(1):305. doi: 10.1186/s12866-023-03057-8
  • Hong BY, Paulson JN, Stine OC, et al. Meta-analysis of the lung microbiota in pulmonary tuberculosis. Tuberculosis (Edinb). 2018 Mar;109:102–108. doi: 10.1016/j.tube.2018.02.006
  • Kommedal Ø, Wilhelmsen MT, Skrede S, et al. Massive parallel sequencing provides new perspectives on bacterial brain abscesses. J Clin Microbiol. 2014 Jun;52(6):1990–1997. doi: 10.1128/JCM.00346-14
  • Vazquez Guillamet LJ, Malinis MF, Meyer JP. Emerging role of Actinomyces meyeri in brain abscesses: a case report and literature review. IDCases. 2017 Jul 20;10:26–29. doi: 10.1016/j.idcr.2017.07.007
  • Dyrhovden R, Nygaard RM, Patel R, et al. The bacterial aetiology of pleural empyema. A descriptive and comparative metagenomic study. Clin Microbiol Infect. 2019 Aug;25(8):981–986. doi: 10.1016/j.cmi.2018.11.030
  • Stebner A, Ensser A, Geißdörfer W, et al. Molecular diagnosis of polymicrobial brain abscesses with 16S-rDNA-based next-generation sequencing. Clin Microbiol Infect. 2021 Jan;27(1):76–82. doi: 10.1016/j.cmi.2020.03.028
  • Altdorfer A, De Cassem JM, Gavage P, et al. A rare case of voluminous brain abscess due to Actinomyces meyeri and Aggregatibacter aphrophilus: is there any evidence for a prolonged antibiotic oral relay? Case Rep J Infect Chemother. 2021 Aug;27(8):1234–1237. doi: 10.1016/j.jiac.2021.02.005
  • Zhang Y, Ye Z, Miao Q, et al. Actinomyces meyeri-induced brain abscess in pregnancy: a case report. BMC Neurol. 2023 Nov 11;23(1):401. doi: 10.1186/s12883-023-03453-7
  • Jespersen FVB, Hansen SU, Jensen SS, et al. Cerebral abscesses with odontogenic origin: a population-based cohort study. Clin Oral Investig. 2023 Jul;27(7):3639–3648. doi: 10.1007/s00784-023-04976-6
  • Bodilsen J, Mariager T, Duerlund LS, et al. DASGIB study group. Brain abscess caused by oral cavity bacteria: a nationwide, population-based cohort study. Clin Infect Dis. 2023 Nov 8;78(3):544–553. doi: 10.1093/cid/ciad678 Online ahead of print.
  • Hoheisel A, Herrmann MJ, Kassi E, et al. Actinomyces meyeri pleural empyema: a case report. IDCases. 2021 Sep 2;26:e01278. doi: 10.1016/j.idcr.2021.e01278
  • Shimoda M, Tanaka Y, Kokutou H, et al. Actinomyces meyeri pleural infection that was difficult to treat due to delayed culture: a case report and literature review of 28 cases. Respir Med Case Rep. 2021 Oct 21;34:101530. doi: 10.1016/j.rmcr.2021.101530
  • Clancy U, Ronayne A, Prentice MB, et al. Actinomyces meyeri brain abscess following dental extraction. BMJ Case Rep. 2015 Apr 13;2015:bcr2014207548. doi: 10.1136/bcr-2014-207548
  • Sah R, Nepal G, Sah S, et al. A rare case of brain abscess caused by Actinomyces meyeri. BMC Infect Dis. 2020 May 27;20(1):378. doi: 10.1186/s12879-020-05100-9
  • Funakoshi Y, Hatano T, Ando M, et al. Intracranial subdural abscess caused by Actinomyces meyeri related to dental treatment: a case report. NMC Case Rep J. 2020 Jun 24;7(3):135–139. doi: 10.2176/nmccrj.cr.2019-0246
  • Tan CY, Javed MA, Artioukh DY. Emerging presence of Actinomyces in perianal and pilonidal infection. J Surg Case Rep. 2022 Aug 17;2022(8):rjac367. doi: 10.1093/jscr/rjac367
  • Mao TC, Zhou X, Tian MN, et al. A rare case of male Fournier’s gangrene with mixed Actinomyces turicensis infection. BMC Urol. 2022 Feb 23;22(1):25. doi: 10.1186/s12894-022-00975-z
  • Khan A, Gidda H, Murphy N, et al. An unusual bacterial etiology of Fournier’s gangrene in an immunocompetent patient. Cureus. 2022 Jul 6;14(7):e26616. doi: 10.7759/cureus.26616
  • Böttger S, Zechel-Gran S, Schmermund D, et al. Odontogenic cervicofacial necrotizing fasciitis: microbiological characterization and management of four clinical cases. Pathogens. 2022 Jan 9;11(1):78. doi: 10.3390/pathogens11010078
  • Imeneo A, Rindi LV, Di Lorenzo A, et al. Brain abscess caused by Actinomyces turicensis in a non-immunocompromised adult patient: a case report and systematic review of the literature. BMC Infect Dis. 2024 Jan 20;24(1):109. doi: 10.1186/s12879-024-08995-w
  • Barberis C, Budia M, Palombarani S, et al. Antimicrobial susceptibility of clinical isolates of Actinomyces and related genera reveals an unusual clindamycin resistance among Actinomyces urogenitalis strains. J Glob Antimicrob Resist. 2017 Mar;8:115–120. doi: 10.1016/j.jgar.2016.11.007
  • Le Bihan A, Ahmed F, O’Driscoll J. An uncommon cause for a breast abscess: Actinomyces turicensis with Peptoniphilus harei. BMJ Case Rep. 2019 Dec 2;12(12):e231194. doi: 10.1136/bcr-2019-231194
  • Tabaksert A, Kumar R, Raviprakash V, et al. Actinomyces turicensis parapharyngeal space infection in an immunocompetent host: first case report and review of literature. Access Microbiol. 2021 Jul 12;3(7):000241. doi: 10.1099/acmi.0.000241
  • Agrafiotis AC, Lardinois I. Pleural empyema caused by Actinomyces turicensis. New Microbes New Infect. 2021 Apr 29;41:100892. doi: 10.1016/j.nmni.2021.100892
  • Cronin JT, Richards BW, Skedros JG. Schaalia (formerly Actinomyces) turicensis infection following open rotator cuff repair. Cureus. 2023 Jan 26;15(1):e34242. doi: 10.7759/cureus.34242
  • Kocsis B, Tiszlavicz Z, Jakab G, et al. Case report of Actinomyces turicensis meningitis as a complication of purulent mastoiditis. BMC Infect Dis. 2018 Dec 20;18(1):686. doi: 10.1186/s12879-018-3610-y
  • Yamamoto Y, Shiroyama T, Hirata H, et al. Secondary subcutaneous abscess due to mixed infections by Peptoniphilus olsenii and Gleimia europaea after COVID-19. Clin Case Rep. 2023 Jan 16;11(1):e6844. doi: 10.1002/ccr3.6844
  • Liang Z, Zhang M, Hao Y, et al. Risk factors associated with keloid infections: a five-year retrospective study. Int Wound J. 2023 Aug;20(6):2215–2223. doi: 10.1111/iwj.14099
  • Kus NJ, Kim BJ, Ross HM. A case report of necrotizing fasciitis with growth of Actinomyces europaeus and Actinotignum schaalii. J Surg Case Rep. 2019 Oct 17;2019(10):rjz286. doi: 10.1093/jscr/rjz286
  • Allen N, James G, Jain Y. A rare case of abdominal wall necrotizing fasciitis caused by Actinomyces europaeus–a novel pathogen. J Surg Case Rep. 2021 Dec 15;2021(12):rjab533. doi: 10.1093/jscr/rjab533
  • Anthony N, Douthit NT, Foster A. Actinomyces europaeus as an emerging cause of necrotizing fasciitis. IDCases. 2023 Feb 12;31:e01712. doi: 10.1016/j.idcr.2023.e01712
  • Zhang S, Xie Y, Wang Y, et al. Fournier’s gangrene with growth of Actinomyces europaeus: a case report. Infect Dis Ther. 2023 Mar;12(3):1007–1011. doi: 10.1007/s40121-023-00781-6
  • Zelyas N, Gee S, Nilsson B, et al. Infections caused by Actinomyces neuii: a case series and review of an unusual bacterium. Can J Infect Dis Med Microbiol. 2016;2016:6017605. doi: 10.1155/2016/6017605
  • Steininger C, Willinger B. Resistance patterns in clinical isolates of pathogenic Actinomyces species. J Antimicrob Chemother. 2016 Feb;71(2):422–427. doi: 10.1093/jac/dkv347
  • Seng P, Bayle S, Alliez A, et al. The microbial epidemiology of breast implant infections in a regional referral centre for plastic and reconstructive surgery in the south of France. Int J Infect Dis. 2015 Jun;35:62–66. doi: 10.1016/j.ijid.2015.04.010
  • Pruijn N, Heesakkers N, Kosse N, et al. Better diagnostic value of tissue cultures obtained during mini-open and arthroscopic procedures compared with sterile punctures to identify periprosthetic shoulder infections: a retrospective cohort study. J Shoulder Elbow Surg. 2022 May;31(5):932–939. doi: 10.1016/j.jse.2021.10.025
  • Levine MT. Peritoneal dialysis catheter-associated polymicrobial infection including Actinomyces neuii: case report and brief literature review. Anaerobe. 2022 Aug;76:102602. doi: 10.1016/j.anaerobe.2022.102602
  • Groeneveld GH, Veldkamp KE, van Dissel JT. Repetitive urinary tract infections and two prostatic masses: prostatic soft tissue infection with Actinomyces neuii. Int J Infect Dis. 2019 Sep;86:55–56. doi: 10.1016/j.ijid.2019.06.029
  • Nikolaitchouk N, Hoyles L, Falsen E, et al. Characterization of Actinomyces isolates from samples from the human urogenital tract: description of Actinomyces urogenitalis sp. nov. Int J Syst Evol Microbiol. 2000 Jul;50(Pt 4):1649–1654. doi: 10.1099/00207713-50-4-1649
  • Van Hoecke F, Beuckelaers E, Lissens P, et al. Actinomyces urogenitalis bacteremia and tubo-ovarian abscess after an in vitro fertilization (IVF) procedure. J Clin Microbiol. 2013 Dec;51(12):4252–4254. doi: 10.1128/JCM.02142-13
  • Holmgaard DB, Marina D, Hansen F, et al. Bacteremia and urogenital infection with Actinomyces urogenitalis following prolonged urinary retention. APMIS. 2020 Jan;128(1):20–24. doi: 10.1111/apm.13000
  • Hall V, Collins MD, Hutson R, et al. Actinomyces cardiffensis sp. nov. from human clinical sources. J Clin Microbiol. 2002 Sep;40(9):3427–3431. doi: 10.1128/JCM.40.9.3427-3431.2002
  • Seo JY, Yeom JS, Ko KS. Actinomyces cardiffensis septicemia: a case report. Diagn Microbiol Infect Dis. 2012 May;73(1):86–88. doi: 10.1016/j.diagmicrobio.2012.02.012
  • Wakabayashi K, Yano S, Kadowaki T, et al. Pulmonary actinomycosis caused by Actinomyces cardiffensis. Intern Med. 2012;51(20):2929–2931. doi: 10.2169/internalmedicine.51.7997
  • Takahashi M, Nakanishi Y, Hamada Y, et al. A case of brain abscess caused by Actinomyces cardiffensis and Parvimonas micra. Tokai J Exp Clin Med. 2020 Dec 20;45(4):189–194.
  • Lawson PA, Nikolaitchouk N, Falsen E, et al. Actinomyces funkei sp. nov. isolated from human clinical specimens. Int J Syst Evol Microbiol. 2001 May;51(Pt 3):853–855. doi: 10.1099/00207713-51-3-853
  • Hinić V, Straub C, Schultheiss E, et al. Identification of a novel 16S rRNA gene variant of Actinomyces funkei from six patients with purulent infections. Clin Microbiol Infect. 2013 Jul;19(7):E312–314. doi: 10.1111/1469-0691.12201
  • Tena D, Losa C, Medina-Pascual MJ, et al. Fournier’s gangrene caused by Actinomyces funkei, Fusobacterium gonidiaformans and Clostridium hathewayi. Anaerobe. 2014 Jun;27:14–16. doi: 10.1016/j.anaerobe.2014.02.004
  • Funke G, Englert R, Frodl R, et al. Actinomyces hominis sp. nov. isolated from a wound swab. Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1678–1681. doi: 10.1099/ijs.0.015818-0
  • Woo PC, Fung AM, Lau SK, et al. Actinomyces hongkongensis sp. nov. A novel Actinomyces species isolated from a patient with pelvic actinomycosis. Syst Appl Microbiol. 2003 Nov;26(4):518–522. doi: 10.1078/072320203770865819
  • Henssge U, Do T, Radford DR, et al. Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov. previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963. Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):509–516. doi: 10.1099/ijs.0.000950-0
  • Hall V, Collins MD, Lawson PA, et al. Actinomyces dentalis sp. nov. from a human dental abscess. Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):427–431. doi: 10.1099/ijs.0.63376-0
  • Hall V, Collins MD, Hutson RA, et al. Actinomyces oricola sp. nov. from a human dental abscess. Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1515–1518. doi: 10.1099/ijs.0.02576-0
  • Renvoise A, Raoult D, Roux V. Actinomyces massiliensis sp. nov. isolated from a patient blood culture. Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):540–544. doi: 10.1099/ijs.0.001503-0
  • Renvoise A, Raoult D, Roux V. Actinomyces timonensis sp. nov. isolated from a human clinical osteo-articular sample. Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1516–1521. doi: 10.1099/ijs.0.012914-0
  • Hall V, Collins MD, Lawson PA, et al. Actinomyces nasicola sp. nov. isolated from a human nose. Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1445–1448. doi: 10.1099/ijs.0.02582-0