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Food Science & Technology

Profiling the potential producers of higher alcohol in different Daqu (a starter of Baijiu) by amplifying the key enzyme gene

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Article: 2306014 | Received 13 Sep 2023, Accepted 10 Jan 2024, Published online: 27 Jan 2024

References

  • Bergkemper, F., Kublik, S., Lang, F., Krüger, J., Vestergaard, G., Schloter, M., & Schulz, S. (2016). Novel oligonucleotide primers reveal a high diversity of microbes which drive phosphorous turnover in soil. Journal of Microbiological Methods, 125, 1–12. https://doi.org/10.1016/j.mimet.2016.04.011
  • Boyce, R., Chilana, P., & Rose, T. (2009). iCODEHOP: A new interactive program for designing Consensus-degenerate hybrid oligonucleotide primers from multiply aligned protein sequences. Nucleic Acids Research, 37(Web Server issue), W222–228. https://doi.org/10.1093/nar/gkp379
  • Cai, W., Wang, Y., Ni, H., Liu, Z., Liu, J., Zhong, J., Hou, Q., Shan, C., Yang, X., & Guo, Z. (2021). Diversity of microbiota, microbial functions, and flavor in different types of low-temperature Daqu. Food Research International (Ottawa, Ont.), 150(Pt A), 110734. https://doi.org/10.1016/j.foodres.2021.110734
  • Çelik, A., & Aktaş, F. (2013). A new NADH-dependent, zinc containing alcohol dehydrogenase from Bacillus thuringiensis serovar israelensis involved in oxidations of short to medium chain primary alcohols. Journal of Molecular Catalysis B: Enzymatic, 89, 114–121. https://doi.org/10.1016/j.molcatb.2013.01.005
  • Chai, L.-J., Lu, Z.-M., Zhang, X.-J., Ma, J., Xu, P.-X., Qian, W., Xiao, C., Wang, S.-T., Shen, C.-H., Shi, J.-S., & Zheng-Hong, X. (2019). Zooming in on butyrate-producing clostridial consortia in the fermented grains of Baijiu via gene sequence-guided microbial isolation. Frontiers in Microbiology, 10, 1397. https://doi.org/10.3389/fmicb.2019.01397
  • Chen, Q., Hu, Y., Zhao, W., Zhu, C., & Zhu, B. (2010). Cloning, expression, and characterization of a novel (S)-specific alcohol dehydrogenase from Lactobacillus kefir. Applied Biochemistry and Biotechnology, 160(1), 19–29. https://doi.org/10.1007/s12010-008-8442-6
  • Chowdhury, N. P., Moon, J., & Müller, V. (2021). Adh4, an alcohol dehydrogenase controls alcohol formation within bacterial microcompartments in the acetogenic bacterium Acetobacterium woodii. Environmental Microbiology, 23(1), 499–511. https://doi.org/10.1111/1462-2920.15340
  • Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., & Tiedje, J. M. (2009). The ribosomal database project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Research, 37(Database issue), D141–145. https://doi.org/10.1093/nar/gkn879
  • de Smidt, O., Du Preez, J. C., & Albertyn, J. (2008). The alcohol dehydrogenases of saccharomyces cerevisiae : A comprehensive review. FEMS Yeast Research, 8(7), 967–978. https://doi.org/10.1111/j.1567-1364.2008.00387.x
  • Deetae, P., Bonnarme, P., Spinnler, H., & Helinck, S. (2007). Production of volatile aroma compounds by bacterial strains isolated from different surface-ripened French cheeses. Applied Microbiology and Biotechnology, 76(5), 1161–1171. https://doi.org/10.1007/s00253-007-1095-5
  • Deng, L., Mao, X., Liu, D., Ning, X.-Q., Shen, Y., Chen, B., Nie, H.-F., Huang, D., & Luo, H.-B. (2020). Comparative analysis of physicochemical properties and microbial composition in high-temperature Daqu with different colors. Frontiers in Microbiology, 11, 588117. https://doi.org/10.3389/fmicb.2020.588117
  • Dowds, B., Sheehan, M., Bailey, C., & McConnell, D. (1988). Cloning and characterization of the gene for a methanol-utilising alcohol dehydrogenase from Bacillus stearothermophilus. Gene, 68(1), 11–22. https://doi.org/10.1016/0378-1119(88)90594-X
  • Fang, C., Du, H., Jia, W., & Xu, Y. (2018). Compositional differences and similarities between typical Chinese Baijiu and Western liquor as revealed by mass spectrometry-based metabolomics. Metabolites, 9(1), 2. https://doi.org/10.3390/metabo9010002
  • Fang, G., Mu, X., & Jiang, Y. (2019). Correlation between structural shifts of bacterial community and organic acid formation during the fermentation of Zhejiang rosy vinegar. Food Sci, 40, 177–184. https://doi.org/10.7506/spkx1002-6630-20181012-098
  • Galamba, A., Soetaert, K., Buyssens, P., Monnaie, D., Jacobs, P., & Content, J. (2001). Molecular and biochemical characterisation of Mycobacterium smegmatis alcohol dehydrogenase C. FEMS Microbiology Letters, 196(1), 51–56. https://doi.org/10.1111/j.1574-6968.2001.tb10539.x
  • Gerong, Z., Huang, F., & Han, X. (2019). A method for determining associations between drinking discomforts and key higher alcohols in strong-aroma Baijiu. Food Ferment Ind, 45(14), 191–195. https://doi.org/10.13995/j.cnki.11-1802/ts.019118
  • Gu, Y., D Van Nostrand, J., Wu, L., He, Z., Qin, Y., Zhao, F.-J., & Zhou, J. (2017). Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations. PLoS One, 12(5), e0176696. https://doi.org/10.1371/journal.pone.0176696
  • Hans, J., Jan, H., & Bengt, P. (1999). SDR and MDR: Completed genome sequences show these protein families to be large, of old origin, and of complex nature. FEBS Letters. 445, 261–264. https://doi.org/10.1016/S0014-5793(99)00130-1
  • Hao, Y., Wang, D., Terigele, Y., Guo, H., & Chen, Z. (2021). Screening butanol-dehydrogenase producing microorganism and study on the enzymatic properties. Food Res Develop, 42, 197–204. https://doi.org/10.12161/j.issn.1005-6521.2021.02.032
  • Hazelwood, L., Daran, J., Maris, A., Pronk, J., & Dickinson, J. (2008). The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism. Applied and Environmental Microbiology, 74(8), 2259–2266. https://doi.org/10.1128/AEM.02625-07
  • Helge-Friedrich, T. (2004). Analysis for free: Comparing programs for sequence analysis. Briefings in Bioinfor, 5, 82–87. https://doi.org/10.1093/bib/5.1.82
  • Holt, S., Miks, M., de Carvalho, B., Foulquié-Moreno, M., & Thevelein, J. (2019). The molecular biology of fruity and floral aromas in beer and other alcoholic beverages. FEMS Microbiology Reviews, 43(3), 193–222. https://doi.org/10.1093/femsre/fuy041
  • Hu, Z., Jia, P., Bai, Y., Fan, T., Zheng, X., & Cai, Y. (2019). Characterisation of five alcohol dehydrogenases from Lactobacillus reuteri DSM20016. Process Biochemistry. 86, 73–79. https://doi.org/10.1016/j.procbio.2019.08.010
  • Jayakumar, A., Chang, B. X., Widner, B., Bernhardt, P., Mulholland, M. R., & Ward, B. B. (2017). Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean. The ISME Journal, 11(10), 2356–2367. https://doi.org/10.1038/ismej.2017.97
  • Karaoğlan, M., Erden-Karaoğlan, F., Yılmaz, S., & İnan, M. (2020). Identification of major ADH genes in ethanol metabolism of Pichia pastoris. Yeast (Chichester, England), 37(2), 227–236. https://doi.org/10.1002/yea.3443
  • Kato, T., Miyanaga, A., Haruki, M., Imanaka, T., Morikawa, M., & Kanaya, S. (2001). Gene cloning of an alcohol dehydrogenase from thermophilic alkane-degrading Bacillus thermoleovorans B23. Journal of Bioscience and Bioengineering, 91(1), 100–102. https://doi.org/10.1016/S1389-1723(01)80122-5
  • Kibbe, W. (2007). OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Research, 35(Web Server issue), W43–46. https://doi.org/10.1093/nar/gkm234
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6), 1547–1549. https://doi.org/10.1093/molbev/msy096
  • Letunic, I., & Bork, P. (2021). Interactive Tree Of Life (iTOL) v5: An online tool for phylogenetic tree display and annotation. Nucleic Acids Research, 49(W1), W293–W296. https://doi.org/10.1093/nar/gkab301
  • Liang, C., Huang, Y., Wang, Y., Ye, Q., Zhang, Z., & Wang, H. (2019). Distribution of bacterial polycyclic aromatic hydrocarbon (PAH) ring-hydroxylating dioxygenases genes in oilfield soils and mangrove sediments explored by gene-targeted metagenomics. Applied Microbiology and Biotechnology, 103(5), 2427–2440. https://doi.org/10.1007/s00253-018-09613-x
  • Li, P., Lin, W., Liu, X., Wang, X., & Luo, L. (2016). Environmental factors affecting microbiota dynamics during traditional solid-state fermentation of Chinese Daqu starter. Frontiers in Microbiology, 7, 1237. https://doi.org/10.3389/fmicb.2016.01237
  • Liu, P., & Miao, L. (2020). Multiple batches of fermentation promote the formation of functional microbiota in Chinese miscellaneous-flavor Baijiu fermentation. Frontiers in Microbiology, 11, 75. https://doi.org/10.3389/fmicb.2020.00075
  • Liu, M., Xu, Z., Zhong, Q., Liu, C., Li, X., & Yuan, X. (2018b). Comparison of the threshold determination method for Chinese liquor (Baijiu) flavor substances. J Chin I Food Sci Technol, 18, 253–260. https://doi.org/10.16429/j.1009-7848.2018.04.033
  • Liu, F., Zhou, X., Chen, X., Chen, J., Du, G., & Fang, F. (2018a). Microbial community of fermented grains and its correlation with organic acids biosynthesis during Yanghe strong-aroma liquor manufacturing process. Acta Microbiol Sin, 58, 2087–2099. https://doi.org/10.13343/j.cnki.wsxb.20170616
  • Li, J., Wang, Y., He, H., Liu, G., Li, X., & Chen, B. (2018). High-throughput sequencing revealed fungal community structures at high temperature Daqu and medium temperature Daqu. Food and Fermentation Industries 44, 52–59. https://doi.org/10.13995/j.cnki.11-1802/ts.018043
  • Lu, J., Yang, F., Yang, J., Chen, L., Liu, Y., & Wang, H. (2019). Source tracing of 1-propanol-producing microorganisms during Baijiu fermentation. China Brewing, 38, 151–155. https://doi.org/10.11882/j.issn.0254-5071.2019.07.030
  • Ma, B., Fan, E., Li, Z., Zhang, Y., Zhang, Z., & Guo, Y. (2020). Microbial diversity and its relationship with flavor compounds in the process of Daqu making of laobaigan- flavor Liquor. Food and Fermentation Industries, 46, 7–16. https://doi.org/10.13995/j.cnki.11-1802/ts.023902
  • Magoč, T., & Salzberg, S. L. (2011). FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics (Oxford, England), 27(21), 2957–2963. https://doi.org/10.1093/bioinformatics/btr507
  • Masud, U., Matsushita, K., & Theeragool, G. (2011). Molecular cloning and characterization of two inducible NAD(+)-adh genes encoding NAD(+)-dependent alcohol dehydrogenases from Acetobacter pasteurianus SKU1108. Journal of Bioscience and Bioengineering, 112(5), 422–431. https://doi.org/10.1016/j.jbiosc.2011.07.020
  • Mistry, J., Chuguransky, S., Williams, L., Qureshi, M., Salazar, G. A., Sonnhammer, E. L. L., Tosatto, S. C. E., Paladin, L., Raj, S., Richardson, L. J., Finn, R. D., & Bateman, A. (2021). Pfam: The protein families database in 2021. Nucleic Acids Research, 49(D1), D412–D419. https://doi.org/10.1093/nar/gkaa913
  • Pang, X.-N., Han, B.-Z., Huang, X.-N., Zhang, X., Hou, L.-F., Cao, M., Gao, L.-J., Hu, G.-H., & Chen, J.-Y. (2018). Effect of the environment microbiota on the flavour of light-flavour Baijiu during spontaneous fermentation. Scientific Reports, 8(1), 3396. https://doi.org/10.1038/s41598-018-21814-y
  • Qu, G., Tang, J., Jiang, J., Yang, Q., Liu, C., & Wu, Q. (2020). Characteristics of higher alcohols synthesized by microbiota in the fermentation process of light aroma type Baijiu started by Xiaoqu. Food and Fermentation Industries, 47, 32–37. https://doi.org/10.13995/j.cnki.11-1802/ts.025697
  • Rauter, M., Prokoph, A., Kasprzak, J., Becker, K., Baronian, K., Bode, R., Kunze, G., & Vorbrodt, H.- M. (2015). Coexpression of Lactobacillus brevis ADH with GDH or G6PDH in Arxula adeninivorans for the synthesis of 1-(R)-phenylethanol. Applied Microbiology and Biotechnology, 99(11), 4723–4733. https://doi.org/10.1007/s00253-014-6297-z
  • Robinson, G., Bailey, C., & Dowds, B. (1994). Gene structure and amino acid sequences of alcohol dehydrogenases of Bacillus stearothermophilus. Biochimica et Biophysica Acta, 1218(3), 432–434. https://doi.org/10.1016/0167-4781(94)90199-6
  • Shen, M., Zhang, C., Wang, Y., Wang, J., Cai, X., & Xing, L. (2018). Research progress on microbial enzyme system in Baijiu Daqu. China Brewing, 37, 7–11. https://doi.org/10.11882/j.issn.0254-5071.2018.04.002
  • Sheng, M., Lu, Z., Zhang, X., Chai, L., Yu, Y., & Shi, J. (2019). Species-level diversity of lactate-producing bacteria in acetic acid fermentation of Zhenjiang aromatic vinegar. Chin J Appl Environ Biol, 25, 1434–1440. https://doi.org/10.19675/j.cnki.1006-687x.2019.02005
  • Sun, H., Liu, S., Mao, J., Yu, Z., Lin, Z., & Mao, J. (2020). New insights into the impacts of Huangjiu components on intoxication. Food Chemistry, 317, 126420. https://doi.org/10.1016/j.foodchem.2020.126420
  • Sun, L., Zhang, W., Xu, J., Liu, J., Xin, X., & Ren, Q. (2020). Changes of microbial community structure and effects on higher alcohols in oat Huangjiu fermentation process. Journal of Food Science and Technology. 38, 43–52. https://doi.org/10.3969/j.issn.2095-6002.2020.01.006
  • Thiour-Mauprivez, C., Devers-Lamrani, M., Mounier, A., Beguet, J., Spor, A., Calvayrac, C., Barthelmebs, L., & Martin-Laurent, F. (2020). Design of a degenerate primer pair to target a bacterial functional community: The hppd bacterial gene coding for the enzyme targeted by herbicides, a study case. Journal of Microbiological Methods, 170, 105839. https://doi.org/10.1016/j.mimet.2020.105839
  • Thompson, C., Freitas, L., & Salzano, F. (2018). Molecular evolution and functional divergence of alcohol dehydrogenases in animals, fungi and plants. Genetics and Molecular Biology, 41(1 suppl 1), 341–354. https://doi.org/10.1590/1678-4685-GMB-2017-0047
  • UniProt Consortium. (2021). UniProt: The universal protein knowledgebase in 2021. Nucleic Acids Research, 49(D1), D480–D489. https://doi.org/10.1093/nar/gkaa1100
  • Wang, X., Du, H., & Xu, Y. (2018). Spatial distribution of microbial community during Chinese light-flavor liquor fermentation. Food and Fermentation Industries, 44, 1–8. https://doi.org/10.13995/j.cnki.11-1802/ts.017334
  • Wang, S., Miao, L., Zhang, M., Liu, P., & Liu, J. (2017). Analysis of the flavor compounds fermented by sauce-flavor-producing Bacillus strain isolated from fermented grains of mixed strong-sauce-flavor Baijiu. China Brewing, 36, 61–65. https://doi.org/10.11882/j.issn.0254-5071.2017.10.014
  • Wang, P., Wu, Q., & Xu, Y. (2018). Core microbiota in Chinese liquor fermentation and associations with environmental factors. Acta Microbiol Sin, 58, 142–153. https://doi.org/10.13343/j.cnki.wsxb.20170060
  • Wang, B., Wu, Q., Xu, Y., & Sun, B. (2021). Recent advances and perspectives in study of microbiome in Chinese Jiuqu starter. Microbiol Chi, 48, 1737–1746. https://doi.org/10.13344/j.microbiol.china.200650
  • Whitham, J., Pawlak, J., & Grunden, A. (2016). Clostridium ljungdahlii: A Review of the Development of an Industrial Bio-catalyst. Curr Biotechnol, 5, 54–70. https://doi.org/10.2174/2211550105666151208211335
  • Woloshuk, C., & Payne, G. A. (1994). The alcohol dehydrogenase gene adh1 is induced in Aspergillus flavus grown on medium conducive to aflatoxin biosynthesis. Applied and Environmental Microbiology, 60(2), 670–676. https://doi.org/10.1002/bit.260430310
  • Xiu, L., Kunliang, G., & Hongxun, Z. (2012). Determination of microbial diversity in Daqu, a fermentation starter culture of Maotai liquor, using nested PCR-denaturing gradient gel electrophoresis. World Journal of Microbiology & Biotechnology, 28(6), 2375–2381. https://doi.org/10.1007/s11274-012-1045-y
  • Xu, Y., Fan, W., Wu, Q., & Wang, H. (2012). Research advance in flavor-oriented analytic technology for liquor-making. Liquor-Making Sci Technol, 1, 17–23. https://doi.org/10.13746/j.njkj.2014533
  • Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., Gilbert, J. A., Karsch-Mizrachi, I., Johnston, A., Cochrane, G., Vaughan, R., Hunter, C., Park, J., Morrison, N., Rocca-Serra, P., Sterk, P., Arumugam, M., Bailey, M., Baumgartner, L., … Glöckner, F. O. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29(5), 415–420. https://doi.org/10.1038/nbt.1823
  • Zhang, L., Wu, C., Ding, X., Zheng, J., & Zhou, R. (2014). Characterisation of microbial communities in Chinese liquor fermentation starters Daqu using nested PCR-DGGE. World Journal of Microbiology & Biotechnology, 30(12), 3055–3063. https://doi.org/10.1007/s11274-014-1732-y
  • Zhao, C., Yan, X., Yang, S., & Chen, F. (2017). Screening of Bacillus strains from Luzhou-flavor liquor making for high-yield ethyl hexanoate and low-yield propanol. LWT, 77, 60–66. https://doi.org/10.1007/s11274-014-1732-y
  • Zhu, J., Shi, J., Lu, Y., Liu, L., & Liu, Y. (2016). Application of strains of Geotrichum spp. to decrease higher alcohols and to increase esters. Journal of the Institute of Brewing, 122(1), 147–155. https://doi.org/10.1002/jib.287
  • Zou, W., Zhao, C., & Luo, H. (2018). Diversity and function of microbial community in Chinese strong-flavor Baijiu ecosystem: A review. Frontiers in Microbiology, 9, 671. https://doi.org/10.3389/fmicb.2018.00671