Journal of Biomolecular Structure and Dynamics, Volume 31, Issue 1 (2013)

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Journal of Biomolecular Structure and Dynamics, Volume 31, Issue 1 (2013)

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Predictive biology using systems and integrative analysis and methods

Foreword

Predictive biology using systems and integrative analysis and methods
Vsevolod J. Makeev
Pages: 1-3
Published online: 07 Dec 2012
First Page PreviewforPredictive biology using systems and integrative analysis and methods | Full Text | PDF (370.4 KB)
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Articles

Article
Modeling of folds and folding pathways for some protein families of (α + β)- and (α/β)-classes
Alexey B. Gordeev & Alexander V. Efimov
Pages: 4-16
Published online: 16 Jul 2012
AbstractforModeling of folds and folding pathways for some protein families of (α + β)- and (α/β)-classes | Full Text | References | PDF (1,008.3 KB)
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Article
Prediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis
Gitanjali Yadav, Swadha Anand & Debasisa Mohanty
Pages: 17-29
Published online: 18 Jul 2012
AbstractforPrediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis | Full Text | References | PDF (1.3 MB)
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Article
Computational screening for new inhibitors of M. tuberculosis mycolyltransferases antigen 85 group of proteins as potential drug targets
Shachi Gahoi, Rahul Shubhra Mandal, Nikita Ivanisenko, Priyanka Shrivastava, Sriyans Jain, Ashish Kumar Singh, Muthukurrusi Varieth Raghunandanan, Swarna Kanchan, Bhupesh Taneja, Chhabinath Mandal, Vladimir A. Ivanisenko, Anil Kumar, Rita Kumar, Open Source Drug Discovery Consortium & Srinivasan Ramachandran
Pages: 30-43
Published online: 18 Jul 2012
AbstractforComputational screening for new inhibitors of M. tuberculosis mycolyltransferases antigen 85 group of proteins as potential drug targets | Full Text | References | PDF (585.6 KB) | Supplemental
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Article
Rationalization and prediction of drug resistant mutations in targets for clinical anti-tubercular drugs
Jyothi Padiadpu, Sumanta Mukherjee & Nagasuma Chandra
Pages: 44-58
Published online: 18 Jul 2012
AbstractforRationalization and prediction of drug resistant mutations in targets for clinical anti-tubercular drugs | Full Text | References | PDF (1.1 MB) | Supplemental
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Article
Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides
Anatoly O. Bragin, Pavel S. Demenkov, Nickolay A. Kolchanov & Vladimir A. Ivanisenko
Pages: 59-64
Published online: 18 Jul 2012
AbstractforAccuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides | Full Text | References | PDF (105.9 KB)
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Article
Relationship between helix stability and binding affinities: molecular dynamics simulations of Bfl-1/A1-binding pro-apoptotic BH3 peptide helices in explicit solvent
Vivek Modi, Dilraj Lama & Ramasubbu Sankararamakrishnan
Pages: 65-77
Published online: 18 Jul 2012
AbstractforRelationship between helix stability and binding affinities: molecular dynamics simulations of Bfl-1/A1-binding pro-apoptotic BH3 peptide helices in explicit solvent | Full Text | References | PDF (544.3 KB)
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Article
The substitutions G245C and G245D in the Zn2+-binding pocket of the p53 protein result in differences of conformational flexibility of the DNA-binding domain
S.S. Pintus, N.V. Ivanisenko, P.S. Demenkov, T.V. Ivanisenko, S. Ramachandran, N.A. Kolchanov & V.A. Ivanisenko
Pages: 78-86
Published online: 18 Jul 2012
AbstractforThe substitutions G245C and G245D in the Zn2+-binding pocket of the p53 protein result in differences of conformational flexibility of the DNA-binding domain | Full Text | References | PDF (480.9 KB) | Supplemental
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Article
Dynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact
Darya V. Pyrkova, Natalya K. Tarasova, Nikolay A. Krylov, Dmitry E. Nolde, Vladimir M. Pentkovsky & Roman G. Efremov
Pages: 87-95
Published online: 18 Jul 2012
AbstractforDynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact | Full Text | References | PDF (269.8 KB)
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Article
Translation efficiency in yeasts correlates with nucleosome formation in promoters
Yu G. Matushkin, V.G. Levitsky, Yu L. Orlov, V.A. Likhoshvai & N.A. Kolchanov
Pages: 96-102
Published online: 18 Jul 2012
AbstractforTranslation efficiency in yeasts correlates with nucleosome formation in promoters | Full Text | References | PDF (339.6 KB)
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Article
Hidden coding potential of eukaryotic genomes: nonAUG started ORFs
Alex V. Kochetov, Phani Deep Prayaga, Oxana A. Volkova & Ramasubbu Sankararamakrishnan
Pages: 103-114
Published online: 18 Jul 2012
AbstractforHidden coding potential of eukaryotic genomes: nonAUG started ORFs | Full Text | References | PDF (225.9 KB)
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Article
Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets
Elizaveta A. Permina, Yulia A. Medvedeva, Pia M. Baeck, Shubhada R. Hegde, Shekhar C. Mande & Vsevolod J. Makeev
Pages: 115-124
Published online: 18 Jul 2012
AbstractforIdentification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets | Full Text | References | PDF (607.5 KB) | Supplemental
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Obituary

Article
Valery (Chrom) Ivanov In memoriam
Maxim Frank-Kamenetskii, Edward Trifonov, Victor Zhurkin, Victor Danilov, Mukti Sarma & Ramaswamy Sarma
Pages: 125-127
Published online: 22 Nov 2012
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