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Ranking mAb–excipient interactions in biologics formulations by NMR spectroscopy and computational approaches

, , , , , , , , , , & show all
Article: 2212416 | Received 04 Jan 2023, Accepted 05 May 2023, Published online: 22 May 2023
 

ABSTRACT

Excipients are added to biopharmaceutical formulations to enhance protein stability and enable the development of robust formulations with acceptable physicochemical properties, but the mechanism by which they confer stability is not fully understood. Here, we aimed to elucidate the mechanism through direct experimental evidence of the binding affinity of an excipient to a monoclonal antibody (mAb), using saturation transfer difference (STD) nuclear magnetic resonance (NMR) spectroscopic method. We ranked a series of excipients with respect to their dissociation constant (KD) and nonspecific binding constants (Ns). In parallel, molecular dynamic and site identification by ligand competitive saturation (SILCS)-Monte Carlo simulations were done to rank the excipient proximity to the proteins, thereby corroborating the ranking by STD NMR. Finally, the excipient ranking by NMR was correlated with mAb conformational and colloidal stability. Our approach can aid excipient selection in biologic formulations by providing insights into mAb–excipient affinities before conventional and time-consuming excipient screening studies are conducted.

Abbreviations

At=

attenuation

B22=

second osmotic virial coefficient

BMSmAb=

Bristol Myers Squibb mAb

CD=

circular dichroism

CGenFF=

CHARMM general force field

D2O=

Deuterium oxide

DTPA=

diethylenetriaminepentaacetic acid

EDTA=

Ethylenediaminetetraacetic acid

FTIR=

Fourier transform Infra-Red

GCMC=

grand canonical Monte Carlo

GFE=

grid-based free energy

ITC=

isothermal titration calorimetry

KD=

dissociation constant

LGFE=

ligand grid free energy

Lp=

laser power

mAb=

monoclonal antibody

MC=

Monte Carlo

MD=

Molecular dynamic

MOE=

Molecular Operating Environment

NAMD=

Nanoscale Molecular Dynamics

nanoDSF=

nano differential scanning fluorimetry

NMR=

nuclear magnetic resonance

Ns=

nonspecific binding constant

PPI=

protein-protein interactions

SILCS=

Site Identification by Ligand Competitive Saturation

SLS=

static light scattering

STD=

saturation transfer difference

STDaf=

STD amplification factor

Tm=

mid-point of thermal transition

TSP=

sodium trimethylsilyl propionate

VMD=

Visual Molecular Dynamics

Acknowledgments

The authors would like to thank Janet Cortes, Tracy Gaebele and Arvind Mathur for this collaboration opportunity, and Dilbir Bindra for valuable discussions on expanding this work.

Disclosure statement

No potential conflict of interest was reported by the authors.

Supplementary material

Supplemental data for this article can be accessed online at https://doi.org/10.1080/19420862.2023.2212416.

Additional information

Funding

The author(s) reported there is no funding associated with the work featured in this article.