Analysis of differentially methylated regions of genomic DNA in maize (Zea mays L.) exposed to salt stress

References

• Baek D, Jiang J, Chung JS, Wang B, Chen J, Xin Z, Shi HZ. 2011. Regulated athkt1 gene expression by a distal enhancer element and dna methylation in the promoter plays an important role in salt tolerance. Plant Cell Physiol. 52(1):149–161.
   PubMed Web of Science ®Google Scholar
• Bai SJ, Li YJ, Zhang J, Yang J. 2010. Afforestation techniques of bamboo and grass in coastal. Mod Agric Sci Technol. 39(13):241.
   Google Scholar
• Bielach A. 2010. Nitrate-regulated auxin transport by nrt1.1 defines a mechanism for nutrient sensing in plants. Dev Cell. 18(6):927–937.
   PubMed Web of Science ®Google Scholar
• Bilichak A, Ilnystkyy Y, Hollunder J, Kovalchuk I. 2012. The progeny of arabidopsis thaliana plants exposed to salt exhibit changes in dna methylation, histone modifications and gene expression. PLoS One. 7(1):e30515.
   PubMed Web of Science ®Google Scholar
• Chen N, Yang Q, Pan L, Chi X, Chen M, Hu DQ, Zheng Y, Wang T, Wang M, Yu SL. 2014. Identification of 30 myb transcription factor genes and analysis of their expression during abiotic stress in peanut (arachis hypogaea L.). Gene. 533(1):332–345.
   PubMed Web of Science ®Google Scholar
• Cheng L, Li X, Huang X, Ma T, Liang Y, Ma X, Peng X, Jia J, Chen S, Chen Y, et al. 2013. Overexpression of sheepgrass r1-myb transcription factor lcmyb1 confers salt tolerance in transgenic arabidopsis. Plant Physiol Biochem. 70(1):252–260.
   PubMedGoogle Scholar
• Dani V, Simon WJ, Duranti M, Croy RR. 2005. Changes in the tobacco leaf apoplast proteome in response to salt stress. Proteomics. 5(3):737–745.
   PubMed Web of Science ®Google Scholar
• Deinlein U, Stephan AB, Horie T, Luo W, Xu G, Schroeder JI. 2014. Plant salt-tolerance mechanisms. Trends Plant Sci. 19(6):371–379.
   PubMed Web of Science ®Google Scholar
• Ding D 2008. Study on the expression profiles of salt responsive transcripts in maize seedlings [ Doctoral dissertation]. Huazhong Agricultural University.
   Google Scholar
• Dong Z, Ma X, Wang Q. 2008. Effects of spraying Yu-Huang-Jin on maize yield. J Maize Sci. 16(2):91–93.
   Google Scholar
• Elhaddad NS, Hunt L, Sloan J, Gray JE. 2014. Light-induced stomatal opening is affected by the guard cell protein kinase apk1b. PLoS One. 9(5):e97161.
   PubMed Web of Science ®Google Scholar
• Feng Y 2015. Comprehensive evaluation and SNP association analysis of salt tolerance in maize inbred lines [ dissertation]. Nantong: Nantong University.
   Google Scholar
• Freitag M, Selker EU. 2005. Controlling DNA methylation: many roads to one modification. Curr Opin Genet Dev. 15(2):191–199.
   PubMed Web of Science ®Google Scholar
• Gao C, Wang Y, Liu G, Yang C, Jiang J, Li H. 2008. Expression profiling of salinity-alkali stress responses by large-scale expressed sequence tag analysis in tamarix hispid. Plant Mol Biol. 66(3):245–258.
   PubMed Web of Science ®Google Scholar
• Gao GZ, Fei Y, Chen BY, Hao LI, Xiao-Dan L, Yan GX, Xu K, Wu XM. 2011. DNA methylation of seed in response to heat stress in brassica rapa L. Acta Agron Sin. 37(9):1597–1604.
   Google Scholar
• Gehring M, Henikoff S. 2007. DNA methylation dynamics in plant genomes. Biochim Biophys Acta. 1769(5):276–286.
   PubMedGoogle Scholar
• Jain M, Tyagi AK, Khurana JP. 2008. Constitutive expression of a meiotic recombination protein gene homolog, ostop6a1, from rice confers abiotic stress tolerance in transgenic arabidopsis, plants. Plant Cell Rep. 27(4):767–778.
   PubMed Web of Science ®Google Scholar
• Jia HT, Zhao KF. 1998. Effects of Na+、K+、Cl− on the absorption of ions of Suaeda salsa and Zea mays seedlings under salt stresses. J Shandong Normal Univ Nat Sci. 13(4):437–440.
   Google Scholar
• Jung C, Seo JS, Han SW, Koo YJ, Kim CH, Song SI. 2008. Overexpression of atmyb44 enhances stomatal closure to confer abiotic stress tolerance in transgenic arabidopsis. Plant Physiol. 146(2):623–635.
   PubMed Web of Science ®Google Scholar
• Kader JC. 1996. Lipid-transfer proteins in plants. Annu Rev Plant Physiol Plant Mol Biol. 47(47):627–654.
   PubMedGoogle Scholar
• Kimatu JN. 2013. Alteration in cytosine DNA methylation patterns and levels induced by aluminium toxicity stress in maize varieties. Mod. 2(1):9–25.
   Google Scholar
• Labra M, Ghiani A, Citterio S, Sgorbati S, Sala F, Vannini C, Ruffini-Castiglione M, Bracale M. 2002. Analysis of cytosine methylation pattern in response to water deficit in pea root tips. Plant Biol. 4(6):694–699.
   Web of Science ®Google Scholar
• Leonhardt N, Kwak JM, Robert N, Waner D, Leonhardt G, Schroeder JI. 2004. Microarray expression analyses of arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2c mutant. Plant Cell. 16(3):596–615.
   PubMed Web of Science ®Google Scholar
• Léran S, Varala K, Boyer JC, Chiurazzi M, Crawford N, Danielvedele F, David L. 2014. A unified nomenclature of nitrate transporter 1/peptide transporter family members in plants. Trends Plant Sci. 19(1):5–9.
   PubMed Web of Science ®Google Scholar
• Li G, Tai FJ, Zheng Y, Luo J, Gong SY, Zhang ZT, Li BX. 2010a. Two cotton cys2/his2-type zinc-finger proteins, ghdi19-1 and ghdi19-2, are involved in plant response to salt/drought stress and abscisic acid signaling. Plant Mol Biol. 74(4–5):437–452.
   PubMed Web of Science ®Google Scholar
• Li JY, Fu YL, Pike SM, Bao J, Tian W, Zhang Y. 2010b. The arabidopsis nitrate transporter nrt1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Plant Cell. 22(5):1633–1646.
   PubMed Web of Science ®Google Scholar
• Li RH, Xia YS, Liu SZ, Sun LL, Guo PG, Miao SY, Chen JH. 2009a. CTAB-improved method of DNA extraction in plant. Lab Res Exploration. 28(9):14–16.
   Google Scholar
• Li S 2014. Analysis of DNA methylation level and pattern of different developmental stages of immature embryos in carya cathyayensia. Dissertation, Lin’an: Zhejiang A&F University.
   Google Scholar
• Li XL, Lin ZX, Nie YC, Guo XP, Zhang XL. 2009b. MSAP analysis of epigenetic changes in cotton (gossypium hirsutum L.) under salt stress. Acta Agron Sin. 35(4):588–596.
   Google Scholar
• Liu H, Zhang YG, An JC, Chang EM. 2009. NaCl stress on the physiological characteristics in potntilla fruticosa L. J Agric Univ Hebei. 32(2):34–37.
   Google Scholar
• Liu Q, Huang H, Feng H, Lou X, ZaiKang AT. 2015. Analysis of DNA methylation levels and patterns in dwarf ornamental cunninghamia lanceolate. Hort Sin. 42(10):2015–2022.
   Google Scholar
• Lu Y, Rong T, Cao M. 2008. Analysis of dna methylation in different maize tissues. J Genet Genomics. 35(1):41–48.
   PubMed Web of Science ®Google Scholar
• Lukens LN, Zhan S. 2007. The plant genome’s methylation status and response to stress: implications for plant improvement. Curr Opin Plant Biol. 10(3):317–322.
   PubMed Web of Science ®Google Scholar
• Martins CP, Pedrosa AM, Du D, Gonçalves LP, Yu Q, Jr GF, Costa MG. 2015. Genome-wide characterization and expression analysis of major intrinsic proteins during abiotic and biotic stresses in sweet orange (citrus sinensis l. osb.). PLoS One. 10(9):e0138786.
   PubMed Web of Science ®Google Scholar
• Miller J, Mclachlan AD, Klug A. 1985. Repetitive zinc-binding domains in the protein transcription factor iiia from xenopus oocytes. Embo J. 4(6):1609–1614.
   PubMed Web of Science ®Google Scholar
• Nie L, Wang Z. 2007. The molecular mechanism and application of DNA methylation inhibitor in the development biology of plants. J Nucl Agric Sci. 21(4):362–365.
   Google Scholar
• Pan YJ, Wang WS, Zhao XQ, Zhu LH, Fu BY, Li ZK. 2011. DNA methylation alterations of rice in response to cold stress. Plant Omics. 4(7):364–369.
   Web of Science ®Google Scholar
• Qing XU, Yu YZ, Zhao M. 2011. Progress of dna methylation in genetics and breeding of plant and animal. Lett Biotechnol. 22(1):113–117.
   Google Scholar
• Ren R, Wang K, Wang W, Liu B, Liu L. 2013. The effect of praying em fertilizer on growth and yield at seeding stage of maize. Chin Agric Sci Bull. 15:108–111.
   Google Scholar
• Reynalópez GE, Simpson J, Ruizherrera J. 1997. Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol Genet Genomics. 253(6):703–710.
   Google Scholar
• Richards EJ. 1997. DNA methylation and plant development. Trends Genet. 13(8):319–323.
   PubMed Web of Science ®Google Scholar
• Ruiz-García L, Cervera MT, Martínez-Zapater JM. 2005. DNA methylation increases throughout arabidopsis development. Planta. 222(2):301–306.
   PubMed Web of Science ®Google Scholar
• Sha AH, Lin XH, Huang JB, Zhang DP. 2005. Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive aflp (MSAP) analysis. Mol Genet Genomics Mgg. 273(6):484–490.
   PubMed Web of Science ®Google Scholar
• Shan X, Wang X, Yang G, Wu Y, Su S, Li S. 2013. Analysis of the DNA methylation of maize (zea mays L.) in response to cold stress based on methylation-sensitive amplified polymorphisms. J Plant Biol. 56(1):32–38.
   Web of Science ®Google Scholar
• Tan MP. 2010. Analysis of DNA methylation of maize in response to osmotic and salt stress based on methylation-sensitive amplified polymorphism. Plant Physiol Biochem. 48(1):21–26.
   PubMed Web of Science ®Google Scholar
• Tian ZD, Zhang Y, Liu J, Xie CH. 2010. Novel potato c2h2-type zinc finger protein gene, stzfp1, which responds to biotic and abiotic stress, plays a role in salt tolerance. Plant Biol. 12(5):689–697.
   PubMed Web of Science ®Google Scholar
• Vos P, Hogers R, Bleeker M, Reijans M, Van LT, Hornes M. 1995. AFLP: a new technique for dna fingerprinting. Nucleic Acids Res. 23(21):4407–4414.
   PubMed Web of Science ®Google Scholar
• Wang B, Zhang M, Fu R, Qian X, Rong P, Zhang Y. 2016. Epigenetic mechanisms of salt tolerance and heterosis in upland cotton (gossypium hirsutum, L.) revealed by methylation-sensitive amplified polymorphism analysis. Euphytica. 208(3):477–491.
   Web of Science ®Google Scholar
• Wang F, Shi R, Wang J. 2013. Genetic variation of DNA methylation in potato shoot tips after the cryopreservation by vitrification approach. Mol Plant Breed. 11(3):351–357.
   Google Scholar
• Wang W, Zhao X, Pan Y, Zhu L, Fu B, Li Z. 2011b. DNA methylation changes detected by methylation-sensitive amplified polymorphism in two contrasting rice genotypes under salt stress. J Genet Genomics. 38(9):419–424.
   PubMed Web of Science ®Google Scholar
• Wang Y, Pan X, Bu N, Tao SY, Wang Y, Ma LJ. 2011a. Level of DNA methylation related to stress in rice. Biotechnol Bull. 12:1–5.
   Google Scholar
• Wu Y, Wang Q, Ma Y, Chu C. 2005. Isolation and expression analysis of salt up-regulated ests in upland rice using pcr-based subtractive suppression hybridization method. Plant Sci. 168(3):847–853.
   Web of Science ®Google Scholar
• Xiang JH, Li LZ, Chen XB. 2012. Progress in the study of abiotic stress-related zinc finger protein genes in plants. J Nucl Agric Sci. 26(4):0666–0672.
   Google Scholar
• Xiong H, Li J, Liu P, Duan J, Zhao Y, Guo X. 2014. Overexpression of osmyb48-1, a novel myb-related transcription factor, enhances drought and salinity tolerance in rice. PLoS One. 9(3):e92913.
   PubMed Web of Science ®Google Scholar
• Xiong LZ, Xu CG, Saghai Maroof M, Zhang Q. 1999. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet. 261(3):439–446.
   PubMedGoogle Scholar
• Xu ML, Li XQ, Korban SS. 2000. AFLP-based detection of DNA methylation. Plant Mol Biol Reporter. 18(4):361–368.
   Web of Science ®Google Scholar
• Yang A, Wang HC, Liu MD, Tang BS, Xia ZM, Xing HP, Yang F. 2003. Effect of ha-k on corn development and factors forming yield. Chin Agric Sci Bull. 19(1):30–32,41.
   Google Scholar
• Zhang L, Zhao G, Jia J, Liu X, Kong X. 2012. Molecular characterization of 60 isolated wheat myb genes and analysis of their expression during abiotic stress. J Exp Bot. 63(1):203–214.
   PubMed Web of Science ®Google Scholar
• Zhao YL, Yu SX, Ye WM, Wang HM, Wang JJ, Fang BX. 2010. Study on dna cytosine methylation of cotton (gossypium hirsutum L.) genome and its implication for salt tolerance. J Integr Agric. 9(6):783–791.
   Google Scholar
• Zhong L, Wang JB. 2007. The role of DNA hypermethylation in salt resistence of triticum aestivum L. J Wuhan Bot Res. 25(1):102–104.
   Google Scholar
• Zhou YH, Cao HL, Yue C, Wang L, Hao XY, Wang XC, Yang YJ. 2015. Changes of dna methylation levels and patterns in tea plant (camellia sinensis) during cold acclimation. Acta Agron Sin. 41(7):1047–1055.
   Google Scholar