Genetic data confirm the presence of Senecio madagascariensis in New Zealand

References

• Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformatics. 30(15):2114–2120. doi:10.1093/bioinformatics/btu170.
   PubMed Web of Science ®Google Scholar
• Cabrera AL, Ré RR. 1965. Sobre un Senecio adventicio en la Provincia de Buenos Aires. Revta Facultad de Agronomía de la Universidad Nacional de La Plata. 41:43–50.
   Google Scholar
• Dormontt EE, Gardner MG, Breed MF, Rodger JG, Prentis PJ, Lowe AJ. 2014. Genetic bottlenecks in time and space: reconstructing invasions from contemporary and historical collections. PLOS ONE. 9(9):e106874. doi:10.1371/journal.pone.0106874.
   PubMed Web of Science ®Google Scholar
• Hilliard OM. 1977. Compositae in Natal. Pietermaritzburg: University of Natal Press.
   Google Scholar
• Jackson C, McLay T, Schmidt-Lebuhn AN. 2021. hybpiper-rbgv and yang-and-smith-rbgv: Containerization and additional options for assembly and paralog detection in target enrichment data. bioRxiv [Internet]. [accessed 2021 Nov 11]. doi:10.1101/2021.11.08.467817.
   Google Scholar
• Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJC, Wickett NJ. 2016. HybPiper: extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment. Applications in Plant Sciences. 4(7):1600016. doi:10.3732/apps.1600016.
   Web of Science ®Google Scholar
• Johnson MG, Pokorny L, Dodsworth S, Botigué LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT, et al. 2019. A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering. Systematic Biology. 68(4):594–606. doi:10.1093/sysbio/syy086.
   PubMed Web of Science ®Google Scholar
• Jovet P, de Vilmorin R, Kerguelen M. 1975. Troisieme supplement de la Flore descriptive et illustree de la France par l’abbe H. Coste. [place unknown]: Albert Blanchard.
   Google Scholar
• Koenen EJM, Kidner C, de Souza ÉR, Simon MF, Iganci JR, Nicholls JA, Brown GK, de Queiroz LP, Luckow M, Lewis GP, et al. 2020. Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation. American Journal of Botany. 107(12):1710–1735. doi:10.1002/ajb2.1568.
   PubMed Web of Science ®Google Scholar
• Lachmuth S, Durka W, Schurr FM. 2010. The making of a rapid plant invader: genetic diversity and differentiation in the native and invaded range of Senecio inaequidens. Molecular Ecology. 19(18):3952–3967. doi:10.1111/j.1365-294X.2010.04797.x.
   PubMed Web of Science ®Google Scholar
• Lafuma L, Balkwill K, Imbert E, Verlaque R, Maurice S. 2003. Ploidy level and origin of the European invasive weed Senecio inaequidens (Asteraceae). Plant Systematics and Evolution. 243(1):59–72. doi:10.1007/s00606-003-0075-0.
   Web of Science ®Google Scholar
• Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2016. Partitionfinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution. 34(3):msw260–msw773. doi:10.1093/molbev/msw260.
   Web of Science ®Google Scholar
• Le Roux JJ, Wieczorek AM, Ramadan MM, Tran CT. 2006. Resolving the native provenance of invasive fireweed (Senecio madagascariensis Poir.) in the Hawaiian Islands as inferred from phylogenetic analysis. Diversity Distributions. 12(6):694–702. doi:10.1111/j.1472-4642.2006.00271.x.
   Web of Science ®Google Scholar
• López MG, Wulff AF, Poggio L, Xifreda CC. 2008. South African fireweed Senecio madagascariensis (Asteraceae) in Argentina: relevance of chromosome studies to its systematics. Botanical Journal of the Linnean Society. 158(4):613–620. doi:10.1111/j.1095-8339.2008.00865.x.
   Web of Science ®Google Scholar
• Marohasy J. 1993. Are we justified in considering fireweed (Senecio madagascariensis) an exotic? Proceedings II of the 10th Australian Weeds Conference and 14th Asian Pacific Weed Science Society Conference, Brisbane, Australia, 6-10 September, 1993, 122–127.
   Google Scholar
• McFadyen R, Morin L. 2012. Senecio madagascariensis Poir.–fireweed. In: Julien M, McFayden R, Cullen JM, editor. Biological control of weeds in Australia. Clayton: CSIRO Publishing; p. 526–536.
   Google Scholar
• McLay TGB, Birch JL, Gunn BF, Ning W, Tate JA, Nauheimer L, Joyce EM, Simpson L, Schmidt-Lebuhn AN, Baker WJ, et al. 2021. New targets acquired: improving locus recovery from the Angiosperms353 probe set. Applications in Plant Sciences. 9:e11420. doi:10.1002/aps3.11420.
   Web of Science ®Google Scholar
• Michael PW. 1981. Alien plants. In: Groves RH, editor. Australian vegetation. Cambridge: Cambridge University Press; p. 44–64.
   Google Scholar
• Minh BQ, Nguyen MAT, von Haeseler A. 2013. Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution. 30(5):1188–1195. doi:10.1093/molbev/mst024.
   PubMed Web of Science ®Google Scholar
• Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Molecular Biology and Evolution. 37(5):1530–1534. doi:10.1093/molbev/msaa015.
   PubMed Web of Science ®Google Scholar
• Nauheimer L, Weigner N, Joyce E, Crayn D, Clarke C, Nargar K. 2021. HybPhaser: a workflow for the detection and phasing of hybrids in target capture data sets. Applications in Plant Sciences. 9(7):e11441. doi:10.1002/aps3.11441.
   Web of Science ®Google Scholar
• Nicholls J, Pennington R, Koenen E, Hughes C, Hearn J, Bunnefeld L, Dexter K, Stone G, Kidner C. 2015. Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). Frontiers in Plant Science. [Internet]. [accessed 2022 Sep 2] 6. https://www.frontiersin.org/articles/10.3389fpls.2015.00710.
   PubMed Web of Science ®Google Scholar
• Radford IJ, Muller P, Fiffer S, Michael PW. 2000. Genetic relationships between Australian fireweed and South African and Madagascan populations of Senecio madagascariensis Poir. and closely related Senecio species. Australian Systematic Botany. 13(3):409–423. doi:10.1071/SB98029.
   Web of Science ®Google Scholar
• Rzedowski J, Vibrans H, Calderon de Rzedowski G. 2003. Senecio inaequidens (Compositae, Senecioneae), una maleza perjudicial introducida en Mexico. Acta Botanica Mexicana. 63:83–96.
   Google Scholar
• Schmidt-Lebuhn AN. 2022. Sequence capture data support the taxonomy of Pogonolepis (Asteraceae: Gnaphalieae) and show unexpected genetic structure. Australian Systematic Botany. 35(4):317–325. doi:10.1071/SB22010.
   Web of Science ®Google Scholar
• Schmidt-Lebuhn AN, Bovill J. 2021. Phylogenomic data reveal four major clades of Australian Gnaphalieae (Asteraceae). TAXON. 70(5):1020–1034. doi:10.1002/tax.12510.
   Web of Science ®Google Scholar
• Schönberger I, Wilton AD, Boardman KF, Breitwieser I, de Lange PJ, de Pauw B, Ford KA, Gibbs ES, Glenny DS, Heenan PB, et al. 2020. Checklist of the New Zealand flora - seed plants [Internet]. [accessed 2022 Oct 23]. doi:10.26065/sw4r-0w62.
   Google Scholar
• Scott LJ, Congdon BC, Playford J. 1998. Molecular evidence that fireweed (Senecio madagascariensis, Asteraceae) is of South African origin. Plant Systematics and Evolution. 213(3):251–257. doi:10.1007/BF00985204.
   Web of Science ®Google Scholar
• Slimp M, Williams LD, Hale H, Johnson MG. 2020. On the potential of Angiosperms353 for population genomics. bioRxiv.:2020.10.11.335174. doi:10.1101/2020.10.11.335174.
   Google Scholar
• Tsutsumi M. 2011. Current and potential distribution of Senecio madagascariensis Poir. (fireweed), an invasive alien plant in Japan. Grassland Science. 57(3):150–157. doi:10.1111/j.1744-697X.2011.00222.x.
   Web of Science ®Google Scholar
• Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SM, Webb DA. 1976. Flora europaea. New York: Cambridge University Press.
   Google Scholar
• Webb CJ, Sykes WR, Garnock-Jones PJ. 1988. Flora of New Zealand. Christchurch: DSIR.
   Google Scholar
• Wijayabandara K, Campbell S, Vitelli J, Shabbir A, Adkins S. 2022. Review of the biology, distribution, and management of the invasive fireweed (Senecio madagascariensis Poir). Plants. 11(1):107. doi:10.3390/plants11010107.
   Web of Science ®Google Scholar
• Yang Y, Smith SA. 2014. Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics. Molecular Biology and Evolution. 31(11):3081–3092. doi:10.1093/molbev/msu245.
   PubMed Web of Science ®Google Scholar
• Zhang C, Huang C-H, Liu M, Hu Y, Panero JL, Luebert F, Gao T, Ma H. 2021. Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation. Journal of Integrative Plant Biology. 63(7):1273–1293. doi:10.1111/jipb.13078.
   PubMed Web of Science ®Google Scholar