Molecular surveillance of potential SARS-CoV-2 reservoir hosts in wildlife rehabilitation centers

References

• Alves RS, do Canto Olegário J, Weber M, da Silva M, Canova R, Sauthier J, Baumbach L, Witt A, Varela A, Mayer F, et al. 2022. Detection of coronavirus in vampire bats (Desmodus rotundus) in southern Brazil. Transboun Emerg Dis. 69(4):2384–2389.
   Google Scholar
• Buchta C, Görzer I, Chiba P, Camp JV, Holzmann H, Puchhammer-Stöckl E, Mayerhofer M, Müller MM, Aberle SW. 2021. Variability of cycle threshold values in an external quality assessment scheme for detection of the SARS-CoV-2 virus genome by RT-PCR. Clin Chem Lab Med. 59(5):987–994.
   PubMed Web of Science ®Google Scholar
• Camporesi A, De Silvestri A, Diotto V, Ferrario S, Eccher L, De Ferrari A, Messina F, Pelizzo G, Mileto D, Calcaterra V. 2022. Very high negative concordance rate of RT-PCR for SARS-CoV-2 in nasopharyngeal swab and tracheo-bronchial aspirate in children. Front Pediatr. 10:866111.
   PubMed Web of Science ®Google Scholar
• Chandler JC, Bevins SN, Ellis JW, Linder TJ, Tell RM, Jenkins-Moore M, Root JJ, Lenoch JB, Robbe-Austerman S, DeLiberto TJ. 2021. SARS-CoV-2 exposure in wild white-tailed deer (Odocoileus virginianus). Proc Natl Acad Sci USA. 118(47):e2114828118.
   PubMed Web of Science ®Google Scholar
• Chaves A, Montecino‐Latorre D, Alcázar P, Suzán G. 2021. Wildlife rehabilitation centers as a potential source of transmission of SARS‐CoV‐2 into native wildlife of Latin America. Biotropica. 53(4):987–993.
   PubMed Web of Science ®Google Scholar
• Delahay RJ, de la Fuente J, Smith GC, Sharun K, Snary EL, Flores Girón L, Nziza J, Fooks AR, Brookes SM, Lean FZX. 2021. Assessing the risks of SARS-CoV-2 in wildlife. One Health Outlook. 3(1):1–14.
   PubMedGoogle Scholar
• Devaux CA, Pinault L, Osman IO, Raoult D. 2020. Can ACE2 receptor polymorphism predict species susceptibility to SARS-CoV-2? Front Public Health. 8:608765.
   PubMed Web of Science ®Google Scholar
• Dunbar SA, Tang Y-W. 2022. Diagnostic tests and procedures during the COVID-19 pandemic. In: Pandemics: insurance and social protection. Cham: Springer; p. 191–216.
   Google Scholar
• Erlichster M, Chana G, Zantomio D, Goudey B, Skafidas E. 2021. Pan-family assays for rapid viral screening: reducing delays in public health responses during pandemics. Clin Infect Dis. 73(9):e3047–e3052.
   PubMed Web of Science ®Google Scholar
• Farrag MA, Amer HM, Bhat R, Hamed ME, Aziz IM, Mubarak A, Dawoud TM, Almalki SG, Alghofaili F, Alnemare AK, et al. 2021. SARS-CoV-2: an overview of virus genetics, transmission, and immunopathogenesis. Int J Environ Res Public Health. 18(12):6312
   Web of Science ®Google Scholar
• Fischhoff IR, Castellanos AA, Rodrigues J, Varsani A, Han BA. 2021a. Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2. Proc Biol Sci. 288(1963):20211651.
   PubMed Web of Science ®Google Scholar
• Fischhoff IR, Castellanos AA, Rodrigues JPGLM, Varsani A, Han BA. 2021b. Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2. Proc Biol Sci. 288(1963):20211651.
   Google Scholar
• Frutos R, Gavotte L, Devaux CA. 2021. Understanding the origin of COVID-19 requires to change the paradigm on zoonotic emergence from the spillover to the circulation model. Infect Genet Evol. 95:104812.
   PubMed Web of Science ®Google Scholar
• Grange ZL, Goldstein T, Johnson CK, Anthony S, Gilardi K, Daszak P, Olival KJ, O'Rourke T, et al.; Expert Panel; PREDICT Consortium; Mazet JAK; University of Edinburgh Epigroup members those who wish to remain anonymous. 2021. Ranking the risk of animal-to-human spillover for newly discovered viruses. Proc Natl Acad Sci USA. 118(39):e2115409118
   Web of Science ®Google Scholar
• Gupta P, Singh MP, Goyal K, Tripti P, Ansari MI, Obli Rajendran V, Dhama K, Malik YS. 2021. Bats and viruses: a death-defying friendship. VirusDis. 32(3):467–479.
   PubMedGoogle Scholar
• Hedman HD, Krawczyk E, Helmy YA, Zhang L, Varga C. 2021. Host diversity and potential transmission pathways of SARS-CoV-2 at the human-animal interface. Pathogens. 10(2):180.
   PubMed Web of Science ®Google Scholar
• Hernandez-Aguilar I, Lorenzo C, Santos-Moreno A, Naranjo EJ, Navarrete-Gutierrez D. 2021. Coronaviruses in bats: a review for the Americas. Viruses. 13(7):1226.
   PubMed Web of Science ®Google Scholar
• Hu H, Jung K, Wang Q, Saif LJ, Vlasova AN. 2018. Development of a one-step RT-PCR assay for detection of pancoronaviruses (α-, β-, γ-, and δ-coronaviruses) using newly designed degenerate primers for porcine and avian ′fecal samples. J Virol Methods. 256:116–122.
   PubMed Web of Science ®Google Scholar
• Islam A, Ferdous J, Islam S, Sayeed MA, Rahman MK, Saha O, Hassan MM, Shirin T. 2022. Transmission dynamics and susceptibility patterns of SARS-CoV-2 in domestic, farmed and wild animals: Sustainable One Health surveillance for conservation and public health to prevent future epidemics and pandemics. Transbound Emerg Dis. 69(5):2523–2543.
   PubMed Web of Science ®Google Scholar
• Jacob Machado D, Scott R, Guirales S, Janies DA. 2021. Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera-hosted coronaviruses: SARS-CoV, MERS-CoV and SARS-CoV-2. Cladistics. 37(5):461–488.
   PubMed Web of Science ®Google Scholar
• Jemeršić L, Lojkić I, Krešić N, Keros T, Zelenika TA, Jurinović L, Skok D, Bata I, Boras J, Habrun B. 2021. Investigating the Presence of SARS CoV-2 in free-living and captive animals. Pathogens. 10(6):635. https://www.mdpi.com/2076-0817/10/6/635.
   PubMed Web of Science ®Google Scholar
• Kayode AJ, Banji-Onisile FO, Olaniran AO, Okoh AI. 2021. An overview of the pathogenesis, transmission, diagnosis, and management of endemic human coronaviruses: a reflection on the past and present episodes and possible future outbreaks. Pathogens. 10(9):1108.
   PubMed Web of Science ®Google Scholar
• Kuchipudi SV, Surendran-Nair M, Ruden RM, Yon M, Nissly RH, Vandegrift KJ, Nelli RK, Li L, Jayarao BM, Maranas CD, et al. 2022. Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer. Proc Natl Acad Sci U S A. 119(6):e2121644119.
   PubMed Web of Science ®Google Scholar
• Le Page M. 2021. Should we be worried by wild animals with covid-19? New Sci. 252(3361):15.
   PubMedGoogle Scholar
• Letko M, Seifert SN, Olival KJ, Plowright RK, Munster VJ. 2020. Bat-borne virus diversity, spillover and emergence. Nat Rev Microbiol. 18(8):461–471.
   PubMed Web of Science ®Google Scholar
• Mathavarajah S, Dellaire G. 2020. Lions, tigers and kittens too: ACE2 and susceptibility to COVID-19. Evol Med Public Health. 2020(1):109–113.
   PubMed Web of Science ®Google Scholar
• MINSAL. 2022. Epidemiological Report and Diary Report of the Health Minister of Chile. https://www.gob.cl/coronavirus/cifrasoficiales/.
   Google Scholar
• OIE. 2022. OIE Wildlife Health Framework: ‘Protecting Wildlife Health to Achieve One Health’. https://www.oie.int/fileadmin/Home/eng/Internationa_Standard_Setting/docs/pdf/WGWildlife/A_Wildlifehealth_conceptnote.pdf.
   Google Scholar
• Olmos C, Campaña G, Monreal V, Pidal P, Sanchez N, Airola C, Sanhueza D, Tapia P, Muñoz AM, Corvalan F. 2021. SARS-CoV-2 infection in asymptomatic healthcare workers at a clinic in Chile. PLoS One. 16(1):e0245913.
   PubMed Web of Science ®Google Scholar
• Palmer MV, Martins M, Falkenberg S, Buckley A, Caserta LC, Mitchell PK, Cassmann ED, Rollins A, Zylich NC, Renshaw RW. 2021. Susceptibility of white-tailed deer (Odocoileus virginianus) to SARS-CoV-2. J Virol. 95(11):e00083–21.
   PubMed Web of Science ®Google Scholar
• Parolin C, Virtuoso S, Giovanetti M, Angeletti S, Ciccozzi M, Borsetti A. 2021. Animal hosts and experimental models of SARS-CoV-2 infection. Chemotherapy. 66(1–2):8–16.
   PubMed Web of Science ®Google Scholar
• Peacock TP, Penrice-Randal R, Hiscox JA, Barclay WS. 2021. SARS-CoV-2 one year on: evidence for ongoing viral adaptation. J General Virol. 102(4):001584.
   PubMed Web of Science ®Google Scholar
• Peña M, Ampuero M, Garcés C, Gaggero A, García P, Velasquez MS, Luza R, Alvarez P, Paredes F, Acevedo J. 2021. Performance of SARS-CoV-2 rapid antigen test compared with real-time RT-PCR in asymptomatic individuals. Int J Infect Dis. 107:201–204.
   PubMed Web of Science ®Google Scholar
• Pratelli A, Pellegrini F, Ceci L, Tatò D, Lucente MS, Capozzi L, Camero M, Buonavoglia A. 2022. Severe acute respiratory syndrome coronavirus 2 detection by real time polymerase chain reaction using pooling strategy of nasal samples. Front Microbiol. 13:957957.
   PubMed Web of Science ®Google Scholar
• Rabalski L, Kosinski M, Smura T, Aaltonen K, Kant R, Sironen T, Szewczyk B, Grzybek M. 2021. Severe acute respiratory syndrome coronavirus 2 in farmed mink (neovison vison), Poland. Emerg Infect Dis. 27(9):2333–2339.
   PubMed Web of Science ®Google Scholar
• Romero F, Espinoza A, Sallaberry-Pincheira N, Napolitano C. 2019. A five-year retrospective study on patterns of casuistry and insights on the current status of wildlife rescue and rehabilitation centers in Chile. Rev Chil de Hist Nat. 92(1):1–10.
   Web of Science ®Google Scholar
• Ruiz-Aravena M, McKee C, Gamble A, Lunn T, Morris A, Snedden CE, Yinda CK, Port JR, Buchholz DW, Yeo YY. 2022. Ecology, evolution and spillover of coronaviruses from bats. Nat Rev Microbiol. 20(5):299–314.
   PubMed Web of Science ®Google Scholar
• SAG. 2022. National Registry of Wildlife Tenence. https://www.sag.gob.cl/ambitos-de-accion/registro-nacional-de-tenedores-de-fauna-silvestre-rntfs/1374/registros.
   Google Scholar
• Sánchez‐Montes S, Ballados‐González GG, Gamboa‐Prieto J, Cruz‐Romero A, Romero‐Salas D, Pérez‐Brígido CD, Austria‐Ruíz MJ, Guerrero‐Reyes A, Lammoglia‐Villagómez MA, Camacho‐Peralta IP. 2022. No molecular evidence of SARS‐CoV‐2 infection in companion animals from Veracruz, Mexico. Transbounding Emerging Dis. 69(4):2398–2403.
   PubMed Web of Science ®Google Scholar
• Sarwar MB, Yasir M, Alikhan N-F, Afzal N, de Oliveira Martins L, Le Viet T, Trotter AJ, Prosolek SJ, Kay GL, Foster-Nyarko E. 2021. SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021. Microbial Genomics. 7(11):000693.
   PubMed Web of Science ®Google Scholar
• Shahhosseini N, Wong G, Kobinger GP, Chinikar S. 2021. SARS-CoV-2 spillover transmission due to recombination event. Gene Rep. 23:101045.
   PubMed Web of Science ®Google Scholar
• Sharun K, Dhama K, Pawde AM, Gortázar C, Tiwari R, Bonilla-Aldana DK, Rodriguez-Morales AJ, de la Fuente J, Michalak I, Attia YA. 2021a. SARS-CoV-2 in animals: potential for unknown reservoir hosts and public health implications. Vet Q. 41(1):181–201.
   PubMed Web of Science ®Google Scholar
• Sharun K, Tiwari R, Saied AA, Dhama K. 2021b. SARS-CoV-2 vaccine for domestic and captive animals: An effort to counter COVID-19 pandemic at the human-animal interface. Vaccine. 39(49):7119–7122.
   PubMed Web of Science ®Google Scholar
• Shriner SA, Ellis JW, Root JJ, Roug A, Stopak SR, Wiscomb GW, Zierenberg JR, Ip HS, Torchetti MK, DeLiberto TJ. 2021. SARS-CoV-2 exposure in Escaped Mink, Utah, USA. Emerg Infect Dis. 27(3):988–990.
   PubMed Web of Science ®Google Scholar
• Villanueva-Saz S, Giner J, Fernández A, Lacasta D, Ortín A, Ramos JJ, Ferrer LM, Ruiz de Arcaute M, Tobajas AP, Pérez MD. 2021. Absence of SARS-CoV-2 antibodies in natural environment exposure in sheep in close contact with humans. Animals (Basel). 11(7):1984.
   PubMedGoogle Scholar
• Weidinger P, Kolodziejek J, Camp JV, Loney T, Kannan DO, Ramaswamy S, Tayoun AA, Corman VM, Nowotny N. 2022. MERS-CoV in sheep, goats, and cattle, United Arab Emirates, 2019: Virological and serological investigations reveal an accidental spillover from dromedaries. Transbound Emerg Dis. 69(5):3066–3072.
   Google Scholar
• Wozniak A, Cerda A, Ibarra-Henríquez C, Sebastian V, Armijo G, Lamig L, Miranda C, Lagos M, Solari S, Guzmán AM, et al. 2020. A simple RNA preparation method for SARS-CoV-2 detection by RT-qPCR. Sci Rep. 10(1):16608.
   Google Scholar
• WHO. 2022. World Health Organization (WHO) Coronavirus (COVID-19) Dashboard. https://covid19.who.int/.
   Google Scholar