1,623
Views
1
CrossRef citations to date
0
Altmetric
Original Articles

Genetic characterization of a small closed island population of Norwegian coastal goat

, , , , &
Pages 47-52 | Received 08 Aug 2019, Accepted 11 Feb 2020, Published online: 24 Feb 2020

References

  • Alexander, D. H., Novembre, J. & Lange, K. (2009). Fast model-based estimation of ancestry in unrelated individuals. Genome Research 19, 1655–1664. doi: 10.1101/gr.094052.109
  • Animalia. (2018). Ammegeitkontrollen. Available at https://www.animalia.no/no/Dyr/husdyrkontrollene/ammegeitkontrollen/.
  • Barbato, M., Orozco-terWengel, P., Tapio, M. & Bruford, M. W. (2015). SNep: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. Frontiers in Genetics 6, 109. doi: 10.3389/fgene.2015.00109
  • Bertolini, F., Cardoso, T. F., Marras, G., Nicolazzi, E. L., Rothchild, M. F., Amills, M. & the AdaptMap Consortium (2018). Genome-wide patterns of homozygosity provide clues about the population history and adaptation of goats. Genetics Selection Evolution 50–59. doi: 10.1186/s12711-018-0424-8
  • Biscarini, F., Cozzi, P., Gaspa, G. & Marras, G. (2018). detectRUNS: Detect runs of homozygosity and runs of heterozygosity in diploid genomes. R package version 0.9.5. Available at https://CRAN.R-project.org/package=detectRUNS.
  • Brito, L. F., Kijas, J. W., Ventura, R. V., Sargolzaei, M., Porto-Neto, L. R., Cánovas, A., Feng, Z., Jafarikia, M. & Schenkel, F. S. (2017). Genetic diversity and signatuires of selection in various goat breeds revealed by genome-wide SNP markers. BMS Genomics 18, 229. doi: 10.1186/s12864-017-3610-0
  • Cardoso, T. F., Amills, M., Bertolini, F., et al. (2018). Patterns of homozygosity in insular and continental goat breeds. Genetics, Selection, Evolution 50(56). doi: 10.1186/s12711-018-0425-7
  • Chang, C. C., Chow, C. C., Tellier, L. C. A. M., Vattikuti, S., Purcell, S. M. & Lee, J. J. (2015). Second-generation PLINK: rising to the challenge of larger and richer datasets. GigaScience 4(1), s13742–015–0047–8. doi:10.1186/s13742-015-0047-8.
  • Eding, H., Croijmanns, R. P. M. A., Groenen, M. A. M. & Meuwissen, T. H. E. (2002). Assessing the contribution of breeds to genetic diversity in conservation schemes. Genetics, Selection, Evolution 34, 613–633. doi:10.1051/gse:2002027 doi: 10.1186/1297-9686-34-5-613
  • Folkestad. (2007). Kystgeita – ein husdyrvariant og eit husdyrbruk på kanten av å bli borte (coastal goat – a livestock breed and production system about to go extinct). Report published online. Accessed 25 July 2019, available at http://www.kystgeit.com/30461369.
  • Meuwissen, T. H. E. & Woolliams, J. A. (1994). Effective sizes of livestock populations to prevent a decline in fitness. Theoretical and Applied Genetics 89, 1019–1026. doi: 10.1007/BF00224533
  • Purcell, S. & Chang, C. PLINK 1.9. Available at www.cog-genomics.org/plink/1.9/.
  • Stephan, W. (2016). Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation. Molecular Ecology 25(1), 79–88. doi: 10.1111/mec.13288
  • Tosser-Klopp, G., Bardou, P., Bouchez, O., Cabau, C., Crooijmans, R., Dong, Y., et al. (2014). Design and characterization of a 52K SNP chip for goats. PLoS ONE 9(1), e86227. doi: 10.1371/journal.pone.0086227
  • Visser, C., Lashmar, S. F., Van Marle-Köster, E., Poli, M. A. & Allain, D. (2016). Genetic diversity and population structure in South African, French and Argentinian Angora goats from genome-wide SNP data. PLoS ONE 11(5), e0154353. doi:10.1371/ journal.pone.0154353 doi: 10.1371/journal.pone.0154353
  • Zheng, X., Levine, D., Shen, J., Gogarten, S. M., Laurie, C. & Weir, B. S. (2012). A high-performance computing toolset for relatedness and principal component analysis of SNP data. Bioinformatics 2012, doi: 10.1093/bioinformatics/bts606