39
Views
0
CrossRef citations to date
0
Altmetric
Articles

Investigation of stalk formation, frequency of dividing cells and gene expression in periphyton mats dominated by Didymosphenia geminata

, &

References

  • Amin, S.A., Parker, M.S., Armbrust, E.V., 2012. Interactions between Diatoms and Bacteria. Microbiol. Mol. Biol. R. 76, 667–684. doi:10.1128/MMBR.00007-12
  • Armbrust, E.V., Berges, J.A., Bowler, C., Green, B.R., Martinez, D., Putnam, N.H., Zhou, S., Allen, A.E., Apt, K.E., Bechner, M., Brzezinski, M.A., Chaal, B.K., Chiovitti, A., Davis, A.K., Demarest, M.S., Detter, J.C., Glavina, T., Goodstein, D., Hadi, M.Z., Hellsten, U., Hildebrand, M., Jenkins, B.D., Jurka, J., Kapitonov, V.V., Kroger, N., Lau, W.W.Y., Lane, T.W., Larimer, F.W., Lippmeier, J.C., Lucas, S., Medina, M., Montsant, A., Obornik, M., Parker, M.S., Palenik, B., Pazour, G.J., 2004. The Genome of the Diatom Thalassiosira pseudonana: Ecology, Evoluation and Metabolism. Science. 306: doi:10.1126/science.1101156
  • Blanco, S., Ector, L., 2009. Distribution, ecology and nuisance effects of freshwater invasive diatom Didymosphenia geminata (Lyngbye) M. Schmidt: a literature review. Nova Hedwigia. 88, 347–422. doi:10.1127/0029-5035/2009/0088-0347
  • Bosse, D., Kock, M.,1998. Influence of phosphate starvation on phosphohydrolases during development of tomato seedlings. Plant Cell Environ. 21, 325–332. doi:10.1046/j.1365-3040.1998.00289.x
  • Bothwell, M.L., Kilroy, C., 2011. Phosphorus limitation of the freshwater benthic diatom Didymosphenia geminata determined by the frequency of dividing cells. Freshwat. Biol. 56, 565–578. doi:10.1111/j.1365-2427.2010.02524.x
  • Bothwell, M.L., Taylor, B.W., Kilroy, C., 2014. The Didymo story: the role of low dissolved phosphorus in the formation of Didymosphenia geminata blooms. Diatom Res. 29, 229–236. doi:10.1080/0269249X.2014.889041
  • Bowler, C., Allen, A.E., Badger, J.H., Grimwood, J., Jabbari, K., Kuo, A., Maheswari, U., Martens, C., Maumus, F., Otiller, R.P., Rayko, E., Salamov, A., Vandepoele, K., Beszteri, B., Gruber, A., Heijde, M., Katinka, M., Mock, T., Valentin, K., Verret, F., Berges, J.A., Brownlee, C., Cadoret, J.P., Chiovitti, A., Choi, C.J., Coesel, S., De Martino, A., Detter, J.C., Durkin, C., Falciatore, A., Fournet, J., Haruta, M., Huysman, M.J.J., Jenkins, B.D., Jiroutova, K., Jorgensen, R.E., Joubert, Y., Kaplan A., Kroger, N., Kroth, P.G., La Rouche, J., Lindquist, E., Lommer, M., Martin-Jezequel, V., Lopez, P. J., Lucas, S., Mangogna, M., McGinnis, K., Medlin, L.K., Montsont, A., Oudot- Le Secq, M.P., Napoli, C., Obornik, M. Schnitzler Parker, M., Petit, J.L., Porcel, B.M., Poulsen, N., Robison, M., Rychlewski, L., Rynearson, T.A., Schmutz, J., Shapiro, H., Siaut, M. Stanley, M., Sussman, M.R., Taylor, A.R., Vardi, A., von Dassow, P.,Vyverman, W., Willis, A., Green, B.R., Van de Peer, Y., Grigoriev, L.V., 2008. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Science. 456, 239–244. doi:10.1038/nature07410
  • British Columbia Ministry of Environment, Environmental Protection Division., 2011. Water Quality Assessment and Objectives for the Cowichan and Koksilah Rivers. First Update.
  • British Columbia Ministry of Environment, Environmental Protection Divison, 2014. Water Quality Assessment and Objectives for the Little Qualicum River Community Watershed. Technical Report.
  • Bruckner, C.G., Rehm, C., Grossart, H.P., Kroth, P.G., 2011. Growth and release of extracellular organic compounds by benthic diatoms depend on interactions with bacteria. Environ. Microbiol. 13, 1052–1063. doi:10.1111/j.1462-2920.2010.02411.x
  • Buchfink, B., Xie, C., Huson, D.H., 2015. Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12, 59–60. doi:10.1038/nmeth.3176
  • CPP-Hutchinson, 2013. Bow River phosphorus management plan, water quality data analysis. Prepared by CPP Environmental Corp and Hutchinson Environmental Services Ltd. for ESRD.
  • Chung, C.W.Y., 2013. Diel oxygen cycles in the Bow River: Relationships to Calgary’s urban nutrient footprint and periphyton and macrophyte biomass. MSc Thesis, University of Calgary, Calgary, Alberta, Canada.
  • Dalziel, A.C., Rogers, S.M., Schulte, P.M., 2009. Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology. Mol. Ecol. 18, 4997–5017. doi:10.1111/j.1365-294X.2009.04427.x
  • Eisenrich, S.J., Bannerman, R.T., Armstrong, D.E., 1975. A simplified phosphorus analysis technique. Environ. Lett. 9, 43–53. doi:10.1080/00139307509437455
  • Gonin, M., Quardokus, E.M., O’Donnol, D., Maddock, J., Brun, Y. V., 2000. Regulation of stalk elongation by phosphate in Caulobacter crescentus. J. Bacteriol. 182, 337–347. doi:10.1128/jb.182.2.337-347.2000
  • Haas, B.J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P.D., Bowden, J., Couger, M.B., Eccles, D., Li, B., Lieber, M., Macmanes, M.D., Ott, M., Orvis, J., Pochet, N., Strozzi, F., Weeks, N., Westerman, R., William, T., Dewey, C.N., Henschel, R., LeDuc, R.D., Friedman, N., Regev, A., 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat. Protoc. 8, 1494–1512. doi:10.1038/nprot.2013.084
  • Jackson, L.J., Corbett, L., Scrimgeour, G., 2016. Environmental constraints on Didymosphenia geminata occurrence and bloom formation in Canadian Rocky Mountain lotic systems. Can. J. Fish. Aquat. Sci. 73, 1–9. doi:10.1139/cjfas-2015-0361
  • Jones, L.R., Manrique, J.M., Uyua, N.M., Whitton, B.A., 2019. Genetic analysis of the invasive alga Didymosphenia geminata in Southern Argintina: Evidence of a Pleistocene origin of local lineages. Nature Research Scientific Reports. 9, 18706. doi:10.1038/s41598-019-55155-1
  • Kilroy, C., Bothwell, M.L., 2011. Environmental control of the stalk length in the bloom-forming freshwater benthic diatom Didymosphenia geminata (Bacillariophyceae). J. Phycol. 47, 981–989. doi:10.1111/j.1529-8817.2011.01029.x
  • Kilroy, C., Bothwell, M.L., 2012. Didymosphenia geminata growth rates and bloom formation in relation to ambient dissolved phosphorus concentration. Freshwat. Biol. 57, 641–653. doi:10.1111/j.1365-2427.2011.02727.x
  • Kirkwood, A.E., Shea, T., Jackson, L.J., McCauley, E., 2007. Didymosphenia geminata in two Alberta headwater rivers: an emerging invasive species that challenges conventional views on algal bloom development. Can. J. Fish. Aquat. Sci. 64:1703–1709. doi:10.1139/f07-152
  • Kirkwood, A.E., Jackson, L.J., McCauley, E., 2009. Are dams hotspots for Didymosphenia geminata blooms? Freshwat. Biol. 54, 1856–1863. doi:10.1111/j.1365-2427.2009.02231.x
  • Kuhajek, J.M., Wood, S.A., 2016. A synthetic culture medium for the freshwater diatom Didymosphenia geminata. Diatom Res. 31(3), 303–311. doi:10.1080/0269249X.2016.1220985
  • Ladrera, R., Goma, J., Prat, N., 2018. Effects of Didymosphenia geminata massive growth on stream communities: Smaller organisms and simplified food web structure. PLOS ONE. 13: e0193545. doi:10.1371/journal.pone.0193545
  • Lewin, J.C., 1962. Silicification. Physiology and Biochemistry of Algae. Academic Press, New York.
  • Levine, J.M., Vila, M., D’Antonio, C.M., Dukes, J.S., Grigulis, K., Lavorel, S., 2003. Mechanisms underlying the impacts of exotic plant species. P. R. Soc. B-Biol. Sci. 270, 775–781. doi:10.1098/rspb.2003.2327
  • Lindstrom, E.A., Skulberg, O.M., 2008. Didymosphenia geminata – a native diatom species of Norwegian Rivers coexisting with the Atlantic salmon. p. 35–40. Proceedings of the 2007 International Workshop on Didymosphenia geminata, Montreal, Quebec. Can. Tech. Rep. Fish. Aquat. Sci. 2795.
  • Morgulis, A., Coulouris, G., Raytselis, Y., Madden, T.L., Agarwala, R., Schaffer, A.A., 2008. Database indexing for production MegaBLAST searches. Bioinformatics. 116, 1757–1764. doi:10.1093/bioinformatics/btn322
  • Nierman, W.C., Feldblyum, T.V., Laub, M.T., I.T. Paulsen, K.E. Nelson, J. Eisen, J.F. Heidelberg, M.R.K. Alley, N. Ohta, J.R. Maddock, I. Potocka, W.C. Nelson, A. Newton, C. Stephens, N.D. Phadke, B. Ely, R.T. DeBoy, R.J. Dodson, A.S. Durkin, M.L. Gwinn, D.H. Haft, J.F. Kolonay, J. Smit, M.B. Craven, H. Khouri, J. Shetty, K. Berry, T. Utterback, K. Tran, A. Wolf, J. Vamathevan, M. Ermolaeva, O. White, S.L. Salzberg, J.C. Venter, L. Shapiro, and C.M. Fraser. 2001. Complete genome sequence of Caulobacter crescentus. P. Natl. Acad. Sci. USA. 98:4136–4141. doi:10.1073/pnas.061029298
  • Qi, Y., Kobayashi, Y., Hulett, F.M., 1997. The pst operon of Bacillus subtilis has a phosphate-regulated promoter and is involved in phosphate transport but not in regulation of the pho regulon. J. Bacteriol. 179, 2534–2539. doi:10.1128/jb.179.8.2534-2539.1997
  • R Development Core Team, 2016. R: a language and environment for statistical computing [online]. R Foundation for Statistical Computing, Vienna, Austria. Available from: http://www.R-project.org.
  • Taylor, B.W., Bothwell, M.L., 2014. The Origin of Invasive Microorganisms Matters for Science, Policy, and Management: The Case of Didymosphenia geminata. BioScience. 64, 531–538. doi:10.1093/biosci/biu060
  • Uematsu, S., Goto, Y., Suzuki, T., Sasazawa, Y., Dohmae, N., Simizu, S., 2014. N-Glycosylation of extracellular matrix protein 1 (ECM1) regulates its secretion, which is unrelated to lipoid proteinosis. FEBS Open Bio. 4, 879–885. doi:10.1016/j.fob.2014.10.004
  • Webb, N.A, Mulichak, A.M., Lam, J.S., Rocchetta, H.L., Garavito, R.M., 2004. Crystal structure of a tetrameric GDP-D-mannose 4,6-dehydratase from a bacterial GDP-D-rhmnose biosynthetic pathway. Protein Sci. 13, 529–539. doi:10.1110/ps.03393904
  • Whitton, B.A., Ellwood, N.T.W., Kawecka, B., 2009. Biology of the freshwater diatom Didymosphenia geminata: a review. Hydrobiologia 630, 1–37. doi:10.1007/s10750-009-9753-5
  • Wustman, B.A., Gretz, M.R., Hoagland, K.D., 1997. Extracellular Matrix Assembly in Diatoms (Bacillariophyceae). Plant Physiol. 113, 1071–1080. doi:10.1104/pp.113.4.1071
  • Yamamoto, Y., Tsukuda, H., 2009. Measurement of in situ specific growth rates of Microcystis (Cyanobacteria) from the frequency of dividing cells. J. Phycol. 45, 1003–1009. doi:10.1111/j.1529-8817.2009.00723.x

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.