Feasibility of a Regionwide Probability Survey for Coral Reef Fish in Puerto Rico and the U.S. Virgin Islands

References

• Appeldoorn, R., J. Beets, J. Bohnsack, S. Bolden, D. Matos, S. Meyers, A. Rosario, Y. Sadovy, and W. Tobias. 1992. Shallow-water reef fish stock assessment for the U.S. Caribbean. NOAA Technical Memorandum NMFS-SEFSC-304.
   Google Scholar
• Ault, J. S., J. A. Bohnsack, and G. A. Meester. 1998. A retrospective (1979–1996) multispecies assessment of coral reef fish stocks in the Florida Keys. U.S. National Marine Fisheries Service Fishery Bulletin 96:395–414.
   Web of Science ®Google Scholar
• Ault, J. S., J. A. Bohnsack, S. G. Smith, and J. Luo. 2005a. Towards sustainable multispecies fisheries in the Florida, USA, coral reef ecosystem. Bulletin of Marine Science 76:595–622.
   Web of Science ®Google Scholar
• Ault, J. S., G. A. Diaz, S. G. Smith, J. Luo, and J. E. Serafy. 1999. An efficient sampling survey design to estimate pink shrimp population abundance in Biscayne Bay, Florida. North American Journal of Fisheries Management 19:696–712.
   Google Scholar
• Ault, J. S., S. G. Smith, and J. A. Bohnsack. 2005b. Evaluation of average length as an estimator of exploited status for the Florida coral reef fish community. ICES Journal of Marine Science 62:417–423.
   Web of Science ®Google Scholar
• Ault, J. S., S. G. Smith, J. A. Browder, W. Nuttle, E. C. Franklin, J. Luo, G. T. DiNardo, and J. A. Bohnsack. 2014. Indicators for assessing the ecological dynamics and sustainability of southern Florida’s coral reef and coastal fisheries. Ecological Indicators 44:164–172.
   Web of Science ®Google Scholar
• Ault, J. S., S. G. Smith, J. Luo, M. E. Monaco, and R. S. Appeldoorn. 2008. Length-based assessment of sustainability benchmarks for coral reef fishes in Puerto Rico. Environmental Conservation 35:221–231.
   Web of Science ®Google Scholar
• Bellwood, D. R., T. R. Hughes, C. Fohlke, and M. Nyström. 2004. Confronting the coral reef crisis. Nature 429:827–833.
   PubMed Web of Science ®Google Scholar
• Berkson, J., and J. T. Thorson. 2015. The determination of data-poor catch limits in the United States: is there a better way? ICES Journal of Marine Science 72:237–242.
   Web of Science ®Google Scholar
• Brock, V. E. 1954. A preliminary report on a method of estimating reef fish populations. Journal of Wildlife Management 18:297–308.
   Web of Science ®Google Scholar
• Caribbean Fishery Management Council. 2011. Comprehensive Annual Catch Limit (ACL) Amendment for the U.S. Caribbean. Caribbean Fishery Management Council, San Juan, Puerto Rico. Available: http://www.caribbeanfmc.com/fmp%20ACLS/final%202011_Caribbean_ACL_Amendment_FEIS_102511.pdf. ( March 2016).
   Google Scholar
• Carruthers, T. R., A. E. Punt, C. J. Walters, A. MacCall, M. K. McAllister, E. J. Dick, and J. Cope. 2014. Evaluating methods for setting catch limits in data-limited fisheries. Fisheries Research 153:48–68.
   Web of Science ®Google Scholar
• Chapman, M. R., and D. L. Kramer. 1999. Gradients in coral reef fish density and size across the Barbados Marine Reserve boundary: effects of reserve protection and habitat characteristics. Marine Ecology 181:81–96.
   Web of Science ®Google Scholar
• Cochran, W. G. 1977. Sampling techniques, 3rd edition. Wiley, New York.
   Google Scholar
• Friedlander, A. M., C. F. G. Jeffrey, S. D. Hile, S. J. Pittman, M. E. Monaco, and C. Caldow, editors. 2013. Coral reef ecosystems of St. John, U.S. Virgin Islands: spatial and temporal patterns in fish and benthic communities (2001–2009). NOAA Technical Memorandum 152.
   Google Scholar
• Friedlander, A. M., and J. D. Parrish. 1998. Habitat characteristics affecting fish assemblages on a Hawaiian coral reef. Journal of Experimental Marine Biology and Ecology 224:1–30.
   Web of Science ®Google Scholar
• Garcia-Sais, J., R. Appeldoorn, A. Bruckner, C. Caldow, J. D. Christensen, C. Lilyestrom, M. E. Monaco, J. Sabater, E. Williams, and E. Diaz. 2005. The state of coral reef ecosystems of the Commonwealth of Puerto Rico. NOAA Technical Memorandum NOS NCCOS 11:91–134.
   Google Scholar
• Haddon, M. 2011. Modelling and quantitative methods in fisheries, 2nd edition. Chapman and Hall/CRC Press, Boca Raton, Florida.
   Google Scholar
• Hilborn, R. 1985. Apparent stock–recruitment relationships in mixed stock fisheries. Canadian Journal of Fisheries and Aquatic Sciences 42:718–723.
   Web of Science ®Google Scholar
• Hordyk, A., K. Ono, S. Valencia, N. Loneragan, and J. Prince. 2014. A novel length-based empirical estimation method of spawning potential ratio (SPR), and tests of its performance, for small-scale, data-poor fisheries. ICES Journal of Marine Science 72:217–231.
   Web of Science ®Google Scholar
• Jeffrey, C. F. B., U. Anlauf, J. Beets, S. Caseau, W. Coles, A. M. Friedlander, S. Herzlieb, Z. Hillis-Starr, M. Kendall, V. Mayor, J. Miller, R. Nemeth, C. Rogers, and W. E. Toller. 2005. The state of coral reef ecosystems of the U.S. Virgin Islands. NOAA Technical Memorandum NOS NCCOS 11:45–81.
   Google Scholar
• Kendall, M. S., C. R. Kruer, K. R. Buja, J. D. Christensen, M. Finkbeiner, R. A. Warner, and M. E. Monaco. 2001. Methods used to map the benthic habitats of Puerto Rico and the U.S. Virgin Islands. NOAA Technical Memorandum 152.
   Google Scholar
• Luckhurst, B. E., and K. Luckhurst. 1978. Analysis of the influence of substrate variables on coral reef fish communities. Marine Biology 49:317–323.
   Web of Science ®Google Scholar
• Manly, B. F. J., L. L. McDonald, D. L. Thomas, T. L. McDonald, and W. P. Erickson. 2002. Resource selection by animals: statistical design and analysis for field studies, 2nd edition. Kluwar Academic Publishers, Boston.
   Google Scholar
• Matos-Caraballo, D. 2004. Puerto Rico/NMFS cooperative fisheries statistics program. Final report submitted to the National Marine Fisheries Service and Puerto Rico Department of Natural and Environmental Resources, San Juan, Puerto Rico.
   Google Scholar
• Menza, C. W., J. S. Ault, J. Beets, J. A. Bohnsack, C. Caldow, J. D. Christensen, A. M. Friedlander, C. Jeffrey, M. Kendall, J. Luo, M. E. Monaco, S. G. Smith, and K. Woody. 2006. A guide to monitoring reef fish in the National Park Service’s South Florida/Caribbean Network. NOAA Technical Memorandum NOS NCCOS 39.
   Google Scholar
• Methot, R. D., and C. R. Wetzel. 2013. Stock synthesis: a biological and statistical framework for fish stock assessment and fishery management. Fisheries Research 142:86–99.
   Web of Science ®Google Scholar
• Murphy, H. M., and G. P. Jenkins. 2010. Observational methods used in marine spatial monitoring of fishes and associated habitats: a review. Marine and Freshwater Research 61:236–252.
   Web of Science ®Google Scholar
• Nadon, M. O., J. S. Ault, I. D. Williams, S. G. Smith, and G. T. DiNardo. 2015. Length-based assessment of coral reef fish populations in the Main and Northwestern Hawaiian Islands. PLoS (Public Library of Science) ONE [online serial] 10(8):e0133960.
   PubMed Web of Science ®Google Scholar
• Newman, D., J. Berkson, and L. Suatoni. 2015. Current methods for setting catch limits for data-limited fish stocks in the United States. Fisheries Research 164:86–93.
   Web of Science ®Google Scholar
• Quinn, T. J., and R. B. Deriso 1999. Quantitative fish dynamics. Oxford University Press, Oxford, UK.
   Google Scholar
• Ricker, W. E. 1975. Computation and interpretation of biological statistics of fish populations. Fisheries Research Board of Canada Bulletin 191.
   Google Scholar
• Rogers, C., and J. Beets. 2001. Degradation of marine ecosystems and decline of fishery resources in marine protected areas in the U.S. Virgin Islands. Environmental Conservation 28:312–322.
   Web of Science ®Google Scholar
• Salas, S., R. Chuenpagdee, J. C. Seijo, and A. Carlos. 2007. Challenges in the assessment and management of small-scale fisheries in Latin America and the Caribbean. Fisheries Research 87:5–16.
   Web of Science ®Google Scholar
• Schnute, J. T., and R. Haigh. 2003. A simulation model for designing groundfish trawl surveys. Canadian Journal of Fisheries and Aquatic Sciences 60:640–656.
   Web of Science ®Google Scholar
• Smith, S. G., J. S. Ault, J. A. Bohnsack, D. E. Harper, J. Luo, and D. B. McClellan. 2011. Multispecies survey design for assessing reef fish stocks, spatially explicit management performance, and ecosystem condition. Fisheries Research 109:25–41.
   Web of Science ®Google Scholar
• Smith, S. J., and S. Gavaris. 1993. Improving the precision of abundance estimates of eastern Scotian Shelf Atlantic Cod from bottom trawl surveys. North American Journal of Fisheries Management 13:35–47.
   Google Scholar
• Steffánsson, G. 1996. Analysis of groundfish survey abundance data: combining the GLM and delta approaches. ICES Journal of Marine Science 53:577–588.
   Web of Science ®Google Scholar