Potential Impact of Mediterranean Aquaculture on the Wild Predatory Bluefish

References

• Akyol, O., and O. Ertosluk. 2010. Fishing near sea-cage farms along the coast of the Turkish Aegean Sea. Journal of Applied Ichthyology 26:11–15.
   Web of Science ®Google Scholar
• Alaska Department of Fish and Game. 2003. SPAM version 3.7: statistics program for analyzing mixtures. Alaska Department of Fish and Game, Commercial Fisheries Division, Gene Conservation Lab, Anchorage.
   Google Scholar
• Arechavala-Lopez, P., D. Izquierdo-Gomez, I. Uglem, and P. Sanchez-Jerez. 2015. Aggregations of Bluefish Pomatomus saltatrix (L.) at Mediterranean coastal fish farms: seasonal presence, daily patterns and influence of farming activity. Environmental Biology of Fishes 98:499–510.
   Web of Science ®Google Scholar
• Arechavala-Lopez, P., I. Uglem, D. Fernandez-Jover, J. T. Bayle-Sempere, and P. Sanchez-Jerez. 2011. Immediate post-escape behaviour of farmed sea bass (Dicentrarchus labrax) in the Mediterranean Sea. Journal of Applied Ichthyology 27:1375–1378.
   Web of Science ®Google Scholar
• Baudouin, L., and P. Lebrun. 2001. An operational Bayesian approach for the identification of sexually reproduced cross-fertilized populations using molecular markers. Acta Horticulturae 546:81–94.
   Google Scholar
• Baum, J. K., and B. Worm. 2009. Cascading top-down effects of changing oceanic predator abundances. Journal of Animal Ecology 78:699–714.
   PubMed Web of Science ®Google Scholar
• Belkhir, K., P. Borsa, L. Chikhi, N. Raufaste, and F. Bonhomme. 2001. GENETIX, logiciel sous Windows TM pour la génétique des populations. [GENETIC, a Windows TM software for population genetics.] Université de Montpellier II, Montpellier, France.
   Google Scholar
• Bernatchez, L. 2001. The evolutionary history of Brown Trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution 55:351–379.
   Google Scholar
• Black, K. D. 2000. Environmental impacts of aquaculture. Sheffield Biological Sciences, Sheffield, UK.
   Google Scholar
• Castillo, A. G. F., E. Beall, P. Moran, J. L. Martinez, and E. Garcia-Vazquez. 2010. Indirect benefits for female salmon from mating with Brown Trout. Journal of Heredity 101:461–468.
   PubMed Web of Science ®Google Scholar
• Danancher, D., and E. Garcia-Vazquez. 2011. Genetic population structure in flatfishes and potential impact of aquaculture and stock enhancement on wild populations in Europe. Reviews in Fish Biology and Fisheries 21:441–462.
   Web of Science ®Google Scholar
• Dempster, T., P. Sanchez-Jerez, J. T. Bayle-Sempere, F. Giménez-Casalduero, and C. Valle. 2002. Attraction of wild fish to sea-cage fish farms in the south-western Mediterranean Sea: spatial and short-term temporal variability. Marine Ecology Progress Series 242:237–252.
   Web of Science ®Google Scholar
• Diana, J. S. 2009. Aquaculture production and biodiversity conservation. BioScience 59:27–38.
   Web of Science ®Google Scholar
• Díaz-López, B., and J. A. Bernal-Shirai. 2007. Bottlenose dolphin (Tursiops truncatus) presence and incidental capture in a marine fish farm on the north-eastern coast of Sardinia (Italy). Journal of Marine Biological Association of the United Kingdom 87:113–117.
   Web of Science ®Google Scholar
• Díaz-López, B., M. Bunke, and J. A. Bernal. 2008. Marine aquaculture off Sardinia Island (Italy) ecosystem effects evaluated through a trophic mass-balance model. Ecological Modeling 212:292–303.
   Web of Science ®Google Scholar
• Díaz-López, B., L. Marini, and F. Polo. 2005. The impact of a fish farm on a bottlenose dolphin population in the Mediterranean Sea. Thalassas 21:53–58.
   Google Scholar
• Dos Santos, S. M. R., A. W. Klopper, C. J. Oosthuizen, and P. Bloomer. 2008. Isolation and characterization of polymorphic tetranucleotide microsatellite loci in the pelagic perciform fish Pomatomus saltatrix (Linnaeus, 1766) from South Africa. Molecular Ecology Resources 8:1065–1067.
   PubMed Web of Science ®Google Scholar
• Estoup, A., C. R. Largiader, E. Perrot, and D. Chourrout. 1996. Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Molecular Marine Biology and Biotechnology 5:295–298.
   Google Scholar
• Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online [online serial] 1:47–50.
   PubMed Web of Science ®Google Scholar
• Fernandes, T. F., A. Eleftheriou, H. Ackefors, M. Eleftheriou, A. Ervik, A. Sanchez-Mata, T. Scanlon, P. White, S. Cochrane, T. H. Pearson, K. L. Miller, and P. A. Read. 2002. The management of the environmental impacts of aquaculture. Scottish Executive, Aberdeen, UK.
   Google Scholar
• Gaffney, P. M. 2006. The role of genetics in shellfish restoration. Aquatic Living Resources 19:277–282.
   Web of Science ®Google Scholar
• Glover, K. A., M. M. Hansen, and O. Skaala. 2009. Identifying the source of farmed escaped Atlantic Salmon (Salmo salar): Bayesian clustering analysis increases accuracy of assignment. Aquaculture 290:37–46.
   Web of Science ®Google Scholar
• Glover, K. A., T. Skilbrei, and O. Skaala. 2008. Genetic assignment identifies farm of origin for Atlantic Salmon Salmo salar escapees in a Norwegian fjord. ICES Journal of Marine Sciences 65:912–920.
   Web of Science ®Google Scholar
• Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available: http://www.unil.ch/izea/softwares/fstat.html. ( April 2013).
   Google Scholar
• Hall, T. A. 1999. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95–98.
   Google Scholar
• Hauser, L., and G. R. Carvalho. 2008. Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts. Fish and Fisheries 9:333–362.
   Web of Science ®Google Scholar
• Hindar, K., N. Ryman, and F. Utter. 1991. Genetic effects of cultured fish on natural fish populations. Canadian Journal of Fisheries and Aquatic Sciences 48:945–957.
   Web of Science ®Google Scholar
• Hutchings, J. A., and D. J. Fraser. 2009. The nature of fisheries- and farming-induced evolution. Molecular Ecology 17:294–313.
   Web of Science ®Google Scholar
• Juanes, F., and D. O. Conover. 1994. Piscivory and prey size selection in young-of-the-year Bluefish: predator preference or size-dependant capture success? Marine Ecology Progress Series 114:59–69.
   Web of Science ®Google Scholar
• Kalinowski, S. T., K. R. Manlove, and M. L. Taper. 2007. ONCOR: software for genetic stock identification. Montana State University, Bozeman.
   Google Scholar
• Librado, P., and J. Rozas. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452.
   PubMed Web of Science ®Google Scholar
• Liordos, V., and V. Goutner. 2008. Habitat and temporal variation in diet of great cormorant nestlings in Greek colonies. Waterbirds 31:424–437.
   Web of Science ®Google Scholar
• Machordom, A., J. Suárez, A. Almodóvar, and J. M. Bautista. 2000. Mitochondrial haplotype variation and phylogeography of Iberian Brown Trout populations. Molecular Ecology 9:1324–1338.
   PubMed Web of Science ®Google Scholar
• McCann, K. 2007. Protecting biostructure. Nature 446:29.
   Web of Science ®Google Scholar
• McGinnity, P, P. Prodöhl, A. Ferguson, R. Hynes, N. Maoiléidigh, N. Baker, D. Cotter, B. O’Hea, D. Cooke, G. Rogan, J. Taggart, and T. Cross. 2003. Fitness reduction and potential extinction of wild populations of Atlantic Salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proceedings of the Royal Society of London Series B 270:2443–2450.
   Google Scholar
• Miralles, L., F. Juanes, and E. Garcia-Vazquez. 2014a. Interoceanic sex-biased migration in Bluefish. Transactions of the American Fisheries Society 143:1308–2014.
   Web of Science ®Google Scholar
• Miralles, L., F. Juanes, A. F. Pardiñas, and E. Garcia-Vazquez. 2014b. Palaeoclimate shaped Bluefish (Pomatomus saltatrix, L.) structure in the Northern hemisphere. Fisheries 39:578–586.
   Google Scholar
• Naylor, R. L., R. J. Goldburg, J. H. Primavera, N. Kautsky, M. C. M. Beveridge, J. Clay, C. Folke, J. Lubchenco, H. Mooney, and M. Troell. Effect of aquaculture on world fish supplies. Nature ( London) 405:1017–1024.
   PubMed Web of Science ®Google Scholar
• Naylor, R. L., K. Hindar, I. A. Fleming, R. J. Goldburg, S. Williams, J. Volpe, F. Whoriskey, J. Eagle, D. Kelso, and M. Mangel. 2005. Fugitive salmon: assessing the risks of escaped fish from net-pen aquaculture. BioScience 55:427–437.
   Web of Science ®Google Scholar
• Paetkau, D, R. Slade, M. Burden, and A. Estoup. 2004. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology 13:55–65.
   Google Scholar
• Pardiñas, A. F., D. Campo, I. G. Pola, L. Miralles, F. Juanes, and E. Garcia-Vazquez. 2010. Climate change and oceanic barriers: genetic differentiation in Pomatomus saltatrix (Pisces: Pomatomidae) in the North Atlantic Ocean and the Mediterranean Sea. Journal of Fish Biology 77:1993–1998.
   PubMed Web of Science ®Google Scholar
• Piry, S., A. Alapetite, J-M. Cornuet, D. Paetkau, L. Baudouina, and A. Estoup. 2004. GENECLASS2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity 95:536–539.
   PubMed Web of Science ®Google Scholar
• Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945–959.
   PubMed Web of Science ®Google Scholar
• Rannala, B., and J. L. Mountain. 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences of the USA 94:9197–9221.
   PubMed Web of Science ®Google Scholar
• Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2) population genetics software for exact test and ecumenicism. Journal of Heredity 86:248–249.
   Web of Science ®Google Scholar
• Read, P., and T. Fernandes. 2003. Management of environmental impacts of marine aquaculture in Europe. Aquaculture 226:139–163.
   Web of Science ®Google Scholar
• Sanchez-Jerez, P., D. Fernandez-Jover, J. Bayle-Sempere, C. Valle, T. Dempster, F. Tuya, and F. Juanes. 2008. Interactions between Bluefish Pomatomus saltatrix (L.) and coastal sea cage farms in the Mediterranean Sea. Aquaculture 282:61–67.
   Web of Science ®Google Scholar
• Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673–4680.
   Google Scholar
• Utter, F., and J. Epifanio. 2002. Marine aquaculture: genetic potentialities and pitfalls. Reviews in Fish Biology and Fisheries 12:59–77.
   Web of Science ®Google Scholar
• Valle, C., J. T. Bayle-Sempere, T. Dempster, P. Sanchez-Jerez, and F. Giménez-Casalduero. 2007. Temporal variability of wild fish assemblages associated with a sea-cage fish farm in the south-western Mediterranean Sea. Estuarine Coast and Shelf Science 72:299–307.
   Web of Science ®Google Scholar
• Van Oosterhout, C., W. F. Hutchinson, D. P. Wills, and P. Shipley. 2004. MICRO–CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4:535–538.
   Web of Science ®Google Scholar
• Verspoor, E. 1988. Widespread hybridization between native Atlantic Salmon, Salmo salar, and introduced Brown Trout, S. trutta, in eastern Newfoundland. Journal of Fish Biology 32:327–334.
   Web of Science ®Google Scholar
• Voisin, M., C. R. Engel, and F. Viard. 2005. Differential shuffling of native genetic diversity across introduced regions in a brown alga: aquaculture vs. maritime traffic effects. Proceedings of the National Academy of Sciences of the USA 102:5432–5437.
   PubMed Web of Science ®Google Scholar
• Youngson, A. F., A. Dosdat, M. Saroglia, and W. C. Jordan. 2001. Genetic interactions between marine finfish species in European aquaculture and wild conspecifics. Journal of Applied Ichthyology 17:153–162.
   Web of Science ®Google Scholar
• Youngson, A. F., J. H. Webb, C. E. Thompson, and D. Knox. 1993. Spawning of escaped farmed Atlantic Salmon (Salmo salar): hybridization of females with Brown Trout (Salmo trutta). Canadian Journal of Fisheries and Aquatic Sciences 50:1986–1990.
   Web of Science ®Google Scholar