Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast U.S. Continental Shelf Large Marine Ecosystem

References

• Aglen, A., A. Engås, I. Huse, K. Michalsen, and B. Stensholt. 1997. Vertical distribution of cod, Haddock, and redfish: impact on bottom trawl and acoustic surveys in the Barents Sea. International Council for the Exploration of the Sea, CM 1997/Y:16, Copenhagen.
   Google Scholar
• Aglen, A., A. Engås, I. Huse, K. Michalsen, and B. K. Stensholt. 1999. How vertical fish distribution may affect survey results. ICES Journal of Marine Science 56:345−360.
   Web of Science ®Google Scholar
• Bangley, C. W., and R. A. Rulifson. 2014. Feeding habits, daily ration, and potential predatory impact of mature female Spiny Dogfish in North Carolina coastal waters. North American Journal of Fisheries Management 34:668−677.
   Web of Science ®Google Scholar
• Benoît, H. P., and D. P. Swain. 2003. Accounting for length- and depth-dependent diel variation in catchability of fish and invertebrates in an annual bottom-trawl survey. ICES Journal of Marine Science 60:1298−1317.
   Web of Science ®Google Scholar
• Bowman, R. E., C. E. Stillwell, W. L. Michaels, and M. D. Grosslein. 2000. Food of northwest Atlantic fishes and two common species of squid. NOAA Technical Memorandum NMFS-NE-155.
   Google Scholar
• Brodziak, J., and L. Hendrickson. 1999. An analysis of environmental effects on survey catches of squids Loligo pealei and Illex illecebrosus in the northwest Atlantic. U.S. National Marine Fisheries Service Fishery Bulletin 97:9−24.
   Web of Science ®Google Scholar
• Brown, R. W., M. Fogarty, C. Legault, T. Miller, V. Nordahl, P. Politis, and P. Rago. 2007. Survey transition and calibration of bottom trawl surveys along the northeastern continental shelf of the United States. International Council for the Exploration of the Sea, CM 2007/Q:20, Copenhagen.
   Google Scholar
• Burgess, G. H. 2002. Spiny Dogfishes: family Squalidae. Pages 48–57 in B. B. Collette, and G. Klein-MacPhee, editors. Bigelow and Schroeder’s fishes of the Gulf of Maine, 3rd edition. Smithsonian Institution Press, Washington, D.C.
   Google Scholar
• Carlson, A. E., E. R. Hoffmayer, C. A. Tribuzio, and J. A. Sulikowski. 2014. The use of satellite tags to redefine movement patterns of Spiny Dogfish (Squalus acanthias) along the US East Coast: implications for fisheries management. PLoS (Public Library of Science) ONE [online serial] 9(7):e103384.
   PubMed Web of Science ®Google Scholar
• Casey, J. M., and R. A. Myers. 1998. Diel variation in trawl catchability: is it as clear as day and night? Canadian Journal of Fisheries and Aquatic Sciences 55:2329−2340.
   Google Scholar
• Crawley, M. J. 2007. The R book. Wiley, Chichester, UK.
   Google Scholar
• Despres-Patanjo, L. I., T. R. Azarovitz, and C. J. Byrne. 1988. Twenty-five years of fish surveys in the northwest Atlantic: the NMFS Northeast Fisheries Center’s bottom trawl survey program. Marine Fisheries Review 50:69−71.
   Web of Science ®Google Scholar
• Ellis, N., and Y. Wang. 2006. Effects of fish density distribution and effort distribution on catchability. ICES Journal of Marine Science 64:178−191.
   Web of Science ®Google Scholar
• Engås, A., J. A. Jacobsen, and A. V. Soldal. 1988. Diurnal changes in bottom trawl catches and vertical fish distribution. International Council for the Exploration of the Sea, CM 1988/B:32, Copenhagen.
   Google Scholar
• Fogarty, M. J., and S. A. Murawski. 1998. Large-scale disturbance and the structure of marine systems: fishery impacts on Georges Bank. Ecological Applications 8:S6−S22.
   Web of Science ®Google Scholar
• Francis, M. P., and M. W. Williams. 1995. Diel variation in trawl catch rates of Pagrus auratus (Sparidae). Fisheries Research 24:301−310.
   Web of Science ®Google Scholar
• Francis, R. I. C. C., R. J. Hurst, and J. A. Renwick. 2003. Quantifying annual variation in catchability for commercial and research fishing. U.S. National Marine Fisheries Service Fishery Bulletin 101:293−304.
   Web of Science ®Google Scholar
• Fraser, H. M., S. P. R. Greenstreet, and G. J. Piet. 2007. Taking account of catchability in groundfish survey trawls: implications for estimating demersal fish biomass. ICES Journal of Marine Science 64:1800−1819.
   Web of Science ®Google Scholar
• Fréon, P., F. Gerlotto, and O. A. Misund. 1993. Consequences of fish behaviour for stock assessment. ICES Marine Science Symposia 196:190−195.
   Google Scholar
• Frisk, M. G., D. E. Duplisea, and V. M. Trenkel. 2011. Exploring the abundance-occupancy relationships for the Georges Bank finfish and shellfish community from 1963 to 2006. Ecological Applications 21:227−240.
   Web of Science ®Google Scholar
• Frisk, M. G., T. J. Miller, S. J. D. Martell, and K. Sosebee. 2008. New hypothesis helps explain elasmobranch “outburst” on Georges Bank in the 1980s. Ecological Applications 18:234−245.
   Web of Science ®Google Scholar
• Garrison, L. P., and J. S. Link. 2000. Dietary guild structure of the fish community in the northeast United States continental shelf ecosystem. Marine Ecology Progress Series 202:231−240.
   Web of Science ®Google Scholar
• Gauthier, S., and G. A. Rose. 2005. Diel vertical migration and shoaling heterogeneity in Atlantic redfish: effects on acoustic and bottom-trawl surveys. ICES Journal of Marine Science 62:75−85.
   Web of Science ®Google Scholar
• Glass, C. W., and C. S. Wardle. 1989. Comparison of the reactions of fish to a trawl gear, at high and low light intensities. Fisheries Research 7:249−266.
   Web of Science ®Google Scholar
• Godø, O. R. 1994. Factors affecting the reliability of groundfish abundance estimates from bottom trawl surveys. Pages 166–195 in A. Fernö and S. Olsen, editors. Marine fish behaviour in capture and abundance estimation. Fishing News Books, Blackwell Scientific Books, London.
   Google Scholar
• Godø, O. R., and S. J. Walsh. 1992. Escapement of fish during bottom trawl sampling: implications for resource assessment. Fisheries Research 13:281−292.
   Web of Science ®Google Scholar
• Godø, O. R., S. J. Walsh, and A. Engås. 1999. Investigating density-dependent catchability in bottom-trawl surveys. ICES Journal of Marine Science 56:292−298.
   Web of Science ®Google Scholar
• Grosslein, M. D., R. W. Langton, and M. P. Sissenwine. 1980. Recent fluctuations in pelagic fish stocks of the northwest Atlantic, Georges Bank region, in relation to species interactions. Rapports et Proces-Verbaux des Reunions Conseil International pour l’Exploration de la Mer 177:374−404.
   Google Scholar
• Grüss, A., M. Drexler, and C. H. Ainsworth. 2014. Using delta generalized additive models to produce distribution maps for spatially explicit ecosystem models. Fisheries Research 159:11−24.
   Web of Science ®Google Scholar
• Guisan, A., T. C. Edwards, and T. Hastie. 2002. Generalized linear and generalized additive models in studies of species distributions: setting the scene. Ecological Modelling 157:89−100.
   Web of Science ®Google Scholar
• Harrell, F. E. 2001. Regression modeling strategies: with application to linear models, logistic regression, and survival analysis. Springer-Verlag, New York.
   Google Scholar
• Hastie, T. J., and R. J. Tibshirani. 1990. Generalized additive models. Chapman and Hall, New York.
   Google Scholar
• Heinänen, S., M. Rönkä, and M. Von Numers. 2008. Modelling the occurrence and abundance of a colonial species, the Arctic tern Sterna paradisaea in the archipelago of SW Finland. Ecography 31:601−611.
   Web of Science ®Google Scholar
• Hjellvik, V., O. R. Godø, and D. Tjøstheim. 2001. Modeling diurnal variation of marine populations. Biometrics 57:189−196.
   Web of Science ®Google Scholar
• Hjellvik, V., O. R. Godø, and D. Tjøstheim. 2002. Diurnal variation in bottom trawl survey catches: does it pay to adjust? Canadian Journal of Fisheries and Aquatic Sciences 59:33−48.
   Google Scholar
• Hollowed, A. B., N. Bax, R. Beamish, J. Collie, M. Fogarty, P. Livingston, J. Pope, and J. C. Rice. 2000. Are multispecies models an improvement on single-species models for measuring fishing impacts on marine ecosystems? ICES Journal of Marine Science 57:707−719.
   Google Scholar
• Jacobson, L. D., L. C. Hendrickson, and J. Tang. 2015. Solar zenith angles for biological research and an expected catch model for diel vertical migration patterns that affect stock size estimates for longfin inshore squid, Doryteuthis pealeii. Canadian Journal of Fisheries and Aquatic Sciences 72:1329–1338.
   Web of Science ®Google Scholar
• Keele, L. J. 2008. Semiparametric regression for the social sciences. Wiley, Chichester, UK.
   Google Scholar
• Korsbrekke, K., and O. Nakken. 1999. Length and species-dependent diurnal variation of catch rates in the Norwegian Barents Sea bottom-trawl surveys. ICES Journal of Marine Science 56:284−291.
   Web of Science ®Google Scholar
• Link, J. S., and F. P. Almeida. 2000. An overview and history of the food web dynamics program of the Northeast Fisheries Science Center, Woods Hole, Massachusetts. NOAA Technical Memorandum NMFS-NE-159.
   Google Scholar
• Link, J. S., and M. D. Ford. 2006. Widespread and persistent increase of Ctenophora in the continental shelf ecosystem off NE USA. Marine Ecology Progress Series 320:153−159.
   Web of Science ®Google Scholar
• Link, J. S., and L. P. Garrison. 2002. Changes in piscivory associated with fishing induced changes to the finfish community on Georges Bank. Fisheries Research 55:71−86.
   Web of Science ®Google Scholar
• Link, J. S., L. P. Garrison, and F. P. Almeida. 2002. Interactions between elasmobranchs and groundfish species (Gadidae and Pleuronectidae) on the northeast U.S. shelf. I: evaluating predation. North American Journal of Fisheries Management 22:550−562.
   Google Scholar
• Loots, C., S. Vaz, B. Planque, and P. Koubbi. 2010. What controls the spatial distribution of the North Sea plaice spawning population? Confronting ecological hypotheses through a model selection framework. ICES Journal of Marine Science 67:244−257.
   Web of Science ®Google Scholar
• Manly, B. F. J. 1991. Randomization and Monte Carlo methods in biology. Chapman and Hall, London.
   Google Scholar
• McCullagh, P., and J. A. Nelder. 1989. Generalized linear models, 2nd edition. Chapman and Hall, London.
   Google Scholar
• Michalsen, K., O. R. Godø, and A. Fernō. 1996. Diel variation in the catchability of gadoids and its influence on the reliability of abundance indices. ICES Journal of Marine Science 53:389−395.
   Web of Science ®Google Scholar
• Miller, T. J., C. Das, P. J. Politis, A. S. Miller, S. M. Lucey, C. M. Legault, R. W. Brown, and P. J. Rago. 2010. Estimation of Albatross IV to Henry B. Bigelow calibration factors. National Marine Fisheries Service, Northeast Fisheries Science Center Reference Document 10-05, Woods Hole, Massachusetts.
   Google Scholar
• Morgan, A. C., and J. A. Sulikowski. 2015. The role of Spiny Dogfish in the northeast United States continental shelf ecosystem: how it has changed over time and potential interspecific competition for resources. Fisheries Research 167:260−277.
   Web of Science ®Google Scholar
• Moustahfid, H., M. C. Tyrrell, J. S. Link, J. A. Nye, B. E. Smith, and R. J. Gamble. 2010. Functional feeding responses of piscivorous fishes from the northeast US continental shelf. Oecologia 163:1059−1067.
   Web of Science ®Google Scholar
• Murawski, S. A. 1991. Can we manage our multispecies fisheries? Fisheries 16(5):5−13.
   Web of Science ®Google Scholar
• NEFSC (Northeast Fisheries Science Center). 1991. Report of the twelfth northeast regional stock assessment workshop (12th SAW), spring 1991. National Marine Fisheries Service, NEFSC Reference Document 91-03, Woods Hole, Massachusetts.
   Google Scholar
• NEFSC (Northeast Fisheries Science Center). 2006. Report of the 43rd northeast regional stock assessment workshop (43rd SAW), Stock Assessment Review Committee (SARC) consensus summary of assessments. National Marine Fisheries Service, NEFSC Reference Document 06-25, Woods Hole, Massachusetts.
   Google Scholar
• Overholtz, W. J., L. D. Jacobson, and J. S. Link. 2008. An ecosystem approach for assessment advice and biological reference points for the Gulf of Maine–Georges Bank Atlantic Herring complex. North American Journal of Fisheries Management 28:247−257.
   Web of Science ®Google Scholar
• Overholtz, W. J., J. S. Link, and L. E. Suslowicz. 2000. Consumption of important pelagic fish and squid by predatory fish in the northeastern USA shelf ecosystem with some fishery comparisons. ICES Journal of Marine Science 57:1147−1159.
   Web of Science ®Google Scholar
• Overholtz, W. J., and A. V. Tyler. 1985. Long-term responses of the demersal fish assemblages of Georges Bank. U.S. National Marine Fisheries Service Fishery Bulletin 83:507−520.
   Web of Science ®Google Scholar
• Palsson, W. A. 2009. The status of Spiny Dogfish in Puget Sound. Pages 53–65 in V. F. Gallucci, G. A. McFarlane, and G. G. Bargmann, editors. Biology and management of dogfish sharks. American Fisheries Society, Bethesda, Maryland.
   Google Scholar
• Petrakis, G., D. N. MacLennan, and A. W. Newton. 2001. Day-night and depth effects on catch rates during trawl surveys in the North Sea. ICES Journal of Marine Science 58:50−60.
   Web of Science ®Google Scholar
• Rago, P. J., and K. A. Sosebee. 2013. Update on the status of Spiny Dogfish in 2013 and projected harvests at the Fmsy proxy and Pstar of 40%. Report to the Mid-Atlantic Fishery Management Council Scientific and Statistical Committee. Available: http://www.nefsc.noaa.gov/program_review/background2014/TOR3TerceiroDogfish2013%20Status%20Report%20and%20Projections.pdf. ( April 2016).
   Google Scholar
• Rose, G. A. 2004. Reconciling overfishing and climate change with stock dynamics of Atlantic Cod (Gadus morhua) over 500 years. Canadian Journal of Fisheries and Aquatic Sciences 61:1553−1557.
   Web of Science ®Google Scholar
• Rulifson, R. A., and T. M. Moore. 2009. Population estimates of Spiny Dogfish aggregations overwintering south of Cape Hatteras, North Carolina, using an area density method. Pages 133–138 in V. F. Gallucci, G. A. McFarlane, and G. G. Bargmann, editors. Biology and management of dogfish sharks. American Fisheries Society, Bethesda, Maryland.
   Google Scholar
• Sagarese, S. R., M. G. Frisk, R. M. Cerrato, K. A. Sosebee, J. A. Musick, and P. J. Rago. 2014a. Application of generalized additive models to examine ontogenetic and seasonal distributions of Spiny Dogfish (Squalus acanthias) in the northeast (US) shelf large marine ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 71:847−877.
   Web of Science ®Google Scholar
• Sagarese, S. R., M. G. Frisk, T. J. Miller, K. A. Sosebee, J. A. Musick, and P. J. Rago. 2014b. Influence of environmental, spatial, and ontogenetic variables on habitat selection and management of Spiny Dogfish in the northeast (US) shelf large marine ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 71:567−580.
   Web of Science ®Google Scholar
• Salthaug, A., and S. Aanes. 2003. Catchability and the spatial distribution of fishing vessels. Canadian Journal of Fisheries and Aquatic Sciences 60:259−268.
   Web of Science ®Google Scholar
• Schwarz, G. 1978. Estimating the dimension of a model. Annals of Statistics 6:461−464.
   Web of Science ®Google Scholar
• Sissenwine, M. P., and E. W. Bowman. 1978. An analysis of some factors affecting the catchability of fish by bottom trawls. International Commission for the Northwest Atlantic Fisheries Research Bulletin 13:81–87.
   Google Scholar
• Sosebee, K. A., and S. X. Cadrin. 2006. A historical perspective on the abundance and biomass of northeast demersal complex stocks from NMFS and Massachusetts inshore bottom trawl surveys, 1963–2002. National Marine Fisheries Service, Northeast Fisheries Science Center, Reference Document 06-05, Woods Hole, Massachusetts.
   Google Scholar
• Stehlik, L. L. 2007. Essential fish habitat source document: Spiny Dogfish, Squalus acanthias, life history and habitat characteristics, 2nd edition. NOAA Technical Memorandum NMFS-NE-203.
   Google Scholar
• Sulikowski, J. A., B. Galuardi, W. Bubley, N. B. Furey, W. B. Driggers, G. W. Ingram, and P. C. W. Tsang. 2010. Use of satellite tags to reveal the movements of Spiny Dogfish Squalus acanthias in the western North Atlantic Ocean. Marine Ecology Progress Series 418:249−254.
   Web of Science ®Google Scholar
• Tallack, S. M. L., and J. W. Mandelman. 2009. Do rare-earth metals deter Spiny Dogfish? A feasibility study on the use of electropositive “mischmetal” to reduce the bycatch of Squalus acanthias by hook gear in the Gulf of Maine. ICES Journal of Marine Science 66:315−322.
   Web of Science ®Google Scholar
• TRAC (Transboundary Resources Assessment Committee). 2010. Northwest Atlantic Spiny Dogfish. Fisheries and Oceans Canada, TRAC Status Report 2010/02. Available: http://www.asmfc.org/uploads/file/2010SpinyDogfishTRAC.pdf. ( April 2016).
   Google Scholar
• Trenkel, V. M., R. I. C. C. Francis, P. Lorance, S. Mahévas, M. Rochet, and D. M. Tracey. 2004. Availability of deep-water fish to trawling and visual observation from a remotely operated vehicle (ROV). Marine Ecology Progress Series 284:293−303.
   Web of Science ®Google Scholar
• Tyrrell, M. C., J. S. Link, and H. Moustahfid. 2011. The importance of including predation in fish population models: implications for biological reference points. Fisheries Research 108:1−8.
   Web of Science ®Google Scholar
• Vaz, S., S. Pavoine, P. Koubbi, C. Loots, and F. Coppin. 2006. Spatio-temporal characteristics of fish populations in relation to environmental forcing functions as a component of ecosystem-based assessment: effects on catchability. International Council for the Exploration of the Sea, CM 2006/O:06, Copenhagen.
   Google Scholar
• Walsh, S. J. 1992. Size-dependent selection at the footgear of a groundfish survey trawl. North American Journal of Fisheries Management 12:625−633.
   Google Scholar
• Wardle, C. S. 1993. Fish behaviour and fishing gear. Pages 609–644 in T. J. Pitcher, editor. Behaviour of teleost fishes, 2nd edition. Chapman and Hall, London.
   Google Scholar
• Wintle, B. A., J. Elith, and J. M. Potts. 2005. Fauna habitat modelling and mapping: a review and case study in the lower Hunter central coast region of NSW. Austral Ecology 30:719−738.
   Web of Science ®Google Scholar
• Wood, S. N. 2006. Generalized additive models: an introduction with R. Chapman and Hall/CRC, Boca Raton, Florida.
   Google Scholar
• Wood, S. N. 2014. Package ‘mgcv.’ Available: http://cran.r-project.org/web/packages/mgcv/index.html. (September 2014).
   Google Scholar
• Zuur, A. F., E. N. Ieno, N. J. Walker, A. A. Saveliev, and G. M. Smith. 2009. Mixed effects models and extensions in ecology with R. Springer, New York.
   Google Scholar