Nervous necrosis virus induced vacuolization is a Rab5- and actin-dependent process

References

• Dan J, Nie L, Jia X, et al. Visualization of the oncolytic alphavirus M1 life cycle in cancer cells. Virol Sin. 2021;36(4):655–17. doi: 10.1007/s12250-020-00339-7
   PubMed Web of Science ®Google Scholar
• Kujala P, Ikaheimonen A, Ehsani N, et al. Biogenesis of the Semliki Forest virus RNA replication complex. J Virol. 2001;75(8):3873–3884. doi: 10.1128/JVI.75.8.3873-3884.2001
   PubMed Web of Science ®Google Scholar
• Luo Y, Motamedi N, Magaldi TG, et al. Interaction between simian virus 40 Major capsid protein VP1 and cell surface ganglioside GM1 triggers vacuole formation, mBio. MBio. 2016;7(2):e00297. doi: 10.1128/mBio.00297-16
   PubMed Web of Science ®Google Scholar
• Bandin I, Souto S. Betanodavirus and VER disease: a 30-year research review. Pathogens. 2020;9(2):106. doi: 10.3390/pathogens9020106
   PubMed Web of Science ®Google Scholar
• Cheng CA, Luo JM, Chiang MH, et al. Nervous necrosis virus coat protein mediates Host translation shutoff through nuclear translocalization and degradation of polyadenylate binding protein. J Virol. 2021;95(17):e0236420. doi: 10.1128/JVI.02364-20
   PubMed Web of Science ®Google Scholar
• Zhang Y, Dong F, Xing J, et al. Characterization of nervous necrosis virus (nnv) nonstructural protein b2 and its enhancement on virus proliferation. Viruses. 2022;14:2818. doi: 10.3390/v14122818
   PubMed Web of Science ®Google Scholar
• Campo SOD, Díaz-Martínez L, Moreno P, et al. The genetic variability and evolution of red-spotted grouper nervous necrosis virus quasispecies can be associated with its virulence. Front Microbiol. 2023;15:1182695. doi: 10.3389/fmicb.2023.1182695
   Google Scholar
• Shetty M, Maiti B, Shivakumar Santhosh K, et al. Betanodavirus of marine and freshwater fish: distribution, genomic organization, diagnosis and control measures. Indian J Virol. 2012;23(2):114–123. doi: 10.1007/s13337-012-0088-x
   PubMedGoogle Scholar
• Munday BL, Kwang J, Moody N. Betanodavirus infections of teleost fish: a review. J Fish Dis. 2002;25(3):127–142. doi: 10.1046/j.1365-2761.2002.00350.x
   Web of Science ®Google Scholar
• Liu J, Huang X, Yu Y, et al. Fish DDX3X exerts antiviral function against grouper nervous necrosis virus infection. Fish Shellfish Immunol. 2017;71:95–104. doi: 10.1016/j.fsi.2017.09.068
   PubMed Web of Science ®Google Scholar
• Huang Y, Zhang Y, Liu Z, et al. Autophagy participates in lysosomal vacuolation-mediated cell death in RGNNV-Infected cells. Front Microbiol. 2020;11:790. doi: 10.3389/fmicb.2020.00790
   PubMed Web of Science ®Google Scholar
• Brandenburg B, Zhuang X. Virus trafficking – learning from single-virus tracking. Nat Rev Microbiol. 2007;5(3):197–208. doi: 10.1038/nrmicro1615
   PubMed Web of Science ®Google Scholar
• Liu SL, Wang ZG, Xie HY, et al. Single-virus tracking: from imaging methodologies to virological applications. Chem Rev. 2020;120(3):1936–1979. doi: 10.1021/acs.chemrev.9b00692
   PubMed Web of Science ®Google Scholar
• Ichikawa S, Ishikawa K, Miyakawa H, et al. Live-cell imaging of the chloroplast outer envelope membrane using fluorescent dyes. Plant Direct. 2022;6(11):e462. doi: 10.1002/pld3.462
   PubMedGoogle Scholar
• Wang S, Huang X, Huang Y, et al. Entry of a novel marine DNA virus, Singapore grouper iridovirus, into host cells occurs via clathrin-mediated endocytosis and macropinocytosis in a pH-dependent manner. J Virol. 2014;88(22):13047–13063. doi: 10.1128/JVI.01744-14
   PubMed Web of Science ®Google Scholar
• Bauer M, Strom M, Hammond DS, et al. Anything you can do, I can do better: can aptamers replace antibodies in clinical diagnostic applications? Molecules. 2019;24:4377. doi: 10.3390/molecules24234377
   PubMed Web of Science ®Google Scholar
• Ali MH, Elsherbiny ME, Emara M. Updates on aptamer research. Int J Mol Sci. 2019;20(10):2511. doi: 10.3390/ijms20102511
   PubMed Web of Science ®Google Scholar
• Zhang J, Wang L, Jaschke A, et al. A Color-Shifting Near-Infrared Fluorescent Aptamer–Fluorophore Module for Live-Cell RNA Imaging. Angew Chem Int Ed Engl. 2021;60(39):21441–21448. doi: 10.1002/anie.202107250
   PubMed Web of Science ®Google Scholar
• Ge D, Chen J, Zhao Z, et al. Characterizing the function-related specific assembly pattern of matrix metalloproteinase-14 by dSTORM imaging. Talanta. 2023;260:124523. doi: 10.1016/j.talanta.2023.124523
   PubMed Web of Science ®Google Scholar
• Kichkailo AS, Narodov AA, Komarova MA, et al. Development of DNA aptamers for visualization of glial brain tumors and detection of circulating tumor cells. Mol Ther Nucleic Acids. 2023;32:267–288. doi: 10.1016/j.omtn.2023.03.015
   PubMedGoogle Scholar
• Qin QW, Wu TH, Jia TL, et al. Development and characterization of a new tropical marine fish cell line from grouper, Epinephelus coioides susceptible to iridovirus and nodavirus. J Virol Methods. 2006;131(1):58–64. doi: 10.1016/j.jviromet.2005.07.009
   PubMed Web of Science ®Google Scholar
• Zhou L, Li P, Yang M, et al. Generation and characterization of novel DNA aptamers against coat protein of grouper nervous necrosis virus (GNNV) with antiviral activities and delivery potential in grouper cells. Antiviral Res. 2016;129:104–114. doi: 10.1016/j.antiviral.2016.02.009
   PubMed Web of Science ®Google Scholar
• Yu Y, Li C, Liu J, et al. Palmitic acid promotes virus replication in fish cell by modulating autophagy flux and TBK1-IRF3/7 Pathway. Front Immunol. 2020;11: 1764. doi: 10.3389/fimmu.2020.01764
   Web of Science ®Google Scholar
• Li C, Wang L, Zhang X, et al. Molecular cloning, expression and functional analysis of Atg16L1 from orange-spotted grouper (Epinephelus coioides). Fish Shellfish Immunol. 2019;94:113–121. doi: 10.1016/j.fsi.2019.09.004
   PubMed Web of Science ®Google Scholar
• Yu Y, Yang Z, Sun F, et al. Two SNPs in SNX2 are associated with SGIV resistance in Asian seabass. Aquaculture. 2021;540:736695. doi: 10.1016/j.aquaculture.2021.736695
   Web of Science ®Google Scholar
• Lai YX, Jin BL, Xu Y, et al. Immune responses of orange-spotted grouper, Epinephelus coioides, against virus-like particles of betanodavirus produced in Escherichia coli. Vet Immunol Immunopathol. 2014;157(1–2):87–96. doi: 10.1016/j.vetimm.2013.10.003
   PubMed Web of Science ®Google Scholar
• Homma Y, Hiragi S, Fukuda M. Rab family of small GTPases: an updated view on their regulation and functions. FEBS J. 2021;288(1):36–55. doi: 10.1111/febs.15453
   PubMed Web of Science ®Google Scholar
• Roberts RL, Barbieri MA, Pryse KM, et al. Stahl, endosome fusion in living cells overexpressing GFP-rab5. J Cell Sci. 1999;112(Pt 21):3667–3675. doi: 10.1242/jcs.112.21.3667
   PubMed Web of Science ®Google Scholar
• Cui ZQ, Ren Q, Wei HP, et al. Quantum dot–aptamer nanoprobes for recognizing and labeling influenza A virus particles. Nanoscale. 2011;3(6):2454–2457. doi: 10.1039/c1nr10218d
   PubMed Web of Science ®Google Scholar
• Yan Q, Lu Y, Zhou L, et al. Mechanistic insights into GLUT1 activation and clustering revealed by super-resolution imaging. Proc Natl Acad Sci U S A. 2018;115(27):7033–7038. doi: 10.1073/pnas.1803859115
   PubMed Web of Science ®Google Scholar
• Peranen J, Kaariainen L. Biogenesis of type I cytopathic vacuoles in Semliki Forest virus-infected BHK cells. J Virol. 1991;65(3):1623–1627. doi: 10.1128/jvi.65.3.1623-1627.1991
   PubMed Web of Science ®Google Scholar
• Monel B, Compton AA, Bruel T, et al. Zika virus induces massive cytoplasmic vacuolization and paraptosis-like death in infected cells. EMBO J. 2017;36(12):1653–1668. doi: 10.15252/embj.201695597
   PubMed Web of Science ®Google Scholar
• Foo NC, Ahn BY, Ma X, et al. Cellular vacuolization and apoptosis induced by hepatitis B virus large surface protein. Hepatology. 2002;36(6):1400–1407. doi: 10.1002/hep.1840360616
   PubMed Web of Science ®Google Scholar
• Motamedi N, Sewald X, Luo Y, et al. SV40 polyomavirus activates the ras-MAPK signaling pathway for vacuolization, cell death, and virus release. Viruses. 2020;12(10):1128. doi: 10.3390/v12101128
   PubMed Web of Science ®Google Scholar
• Shubin AV, Demidyuk IV, Lunina NA, et al. Protease 3C of hepatitis a virus induces vacuolization of lysosomal/endosomal organelles and caspase-independent cell death. BMC Cell Biol. 2015;16(1):4. doi: 10.1186/s12860-015-0050-z
   PubMedGoogle Scholar
• Wang IH, Burckhardt CJ, Yakimovich A, et al. Imaging, tracking and computational analyses of virus entry and egress with the Cytoskeleton. Viruses. 2018;10(4):166. doi: 10.3390/v10040166
   PubMed Web of Science ®Google Scholar
• Wen Z, Zhang Y, Lin Z, et al. Cytoskeleton—a crucial key in host cell for coronavirus infection. J Mol Cell Biol. 2020;12(12):968–979. doi: 10.1093/jmcb/mjaa042
   PubMed Web of Science ®Google Scholar
• Simpson C, Yamauchi Y. Microtubules in Influenza Virus Entry and Egress. Viruses. 2020;12(1):117. doi: 10.3390/v12010117
   PubMed Web of Science ®Google Scholar
• Cheng Y, Lou JX, Liu CC, et al. Microfilaments and microtubules alternately coordinate the multi-step endosomal trafficking of classical swine fever virus. J Virol. 2021;95(10):e02436–20. doi: 10.1128/JVI.02436-20
   PubMed Web of Science ®Google Scholar
• Danastas K, Larsen A, Jobson S, et al. Herpes simplex virus-1 utilizes the host actin cytoskeleton for its release from axonal growth cones. PLOS Pathog. 2022;18(1):e1010264. doi: 10.1371/journal.ppat.1010264
   PubMed Web of Science ®Google Scholar
• Zhang Y, Gao W, Li J, et al. The role of host cytoskeleton in flavivirus infection. Virol Sin. 2019;34(1):30–41. doi: 10.1007/s12250-019-00086-4
   PubMed Web of Science ®Google Scholar
• Nkandeu SD, Bout IV, Cronjé MJ, et al. A novel 2-Methoxyestradiol analogue is responsible for vesicle disruption and lysosome aggregation in breast cancer cells. Pharmacology. 2018;102(1–2):9–16. doi: 10.1159/000487443
   PubMed Web of Science ®Google Scholar
• Campbell EA, Reddy VRAP, Gray AG, et al. Discrete virus factories form in the cytoplasm of cells coinfected with two replication-competent tagged reporter birnaviruses that subsequently coalesce over time. J Virol. 2020;94(13):e02107–19. doi: 10.1128/JVI.02107-19
   PubMed Web of Science ®Google Scholar