GlmS plays a key role in the virulence factor expression and biofilm formation ability of Staphylococcus aureus promoted by advanced glycation end products

References

• Archer NK, Mazaitis MJ, Costerton JW, et al. Staphylococcus aureus biofilms: properties, regulation, and roles in human disease. Virulence. 2011;2(5):445–12. doi: 10.4161/viru.2.5.17724
   PubMed Web of Science ®Google Scholar
• Arciola CR, Campoccia D, Speziale P, et al. Biofilm formation in Staphylococcus implant infections. A review of molecular mechanisms and implications for biofilm-resistant materials. Biomaterials. 2012;33(26):5967–5982. doi: 10.1016/j.biomaterials.2012.05.031
   PubMed Web of Science ®Google Scholar
• Xie X, Bao Y, Ni L, et al. Bacterial profile and antibiotic resistance in patients with diabetic foot ulcer in Guangzhou, Southern China: focus on the differences among different Wagner’s grades, IDSA/IWGDF grades, and ulcer types. Int J Endocrinol. 2017;2017:8694903. doi: 10.1155/2017/8694903
   PubMed Web of Science ®Google Scholar
• McCarthy H, Rudkin JK, Black NS, et al. Methicillin resistance and the biofilm phenotype in Staphylococcus aureus. Front Cell Infect Microbiol. 2015;5:1. doi: 10.3389/fcimb.2015.00001
   PubMed Web of Science ®Google Scholar
• Vlassara H, Uribarri J. Advanced glycation end products (AGE) and diabetes: cause, effect, or both? Curr Diab Rep. 2014;14(1):453. doi: 10.1007/s11892-013-0453-1
   PubMed Web of Science ®Google Scholar
• Stensen MH, Tanbo T, Storeng R, et al. Advanced glycation end products and their receptor contribute to ovarian ageing. Hum Reprod. 2014;29(1):125–134. doi: 10.1093/humrep/det419
   PubMed Web of Science ®Google Scholar
• Xie X, Yang C, Duan C, et al. Advanced glycation end products reduce macrophage-mediated killing of Staphylococcus aureus by ARL8 upregulation and inhibition of autolysosome formation. Eur J Immunol. 2020;50(8):1174–1186. doi: 10.1002/eji.201948477
   PubMed Web of Science ®Google Scholar
• Xie X, Liu X, Li Y, et al. Advanced glycation end products enhance biofilm formation by promoting extracellular DNA release through sigB upregulation in Staphylococcus aureus. Front Microbiol. 2020;11:1479. doi: 10.3389/fmicb.2020.01479
   PubMed Web of Science ®Google Scholar
• Baev N, Endre G, Petrovics G, et al. Six nodulation genes of nod box locus 4 in rhizobium meliloti are involved in nodulation signal production: nodM codes for D-glucosamine synthetase. Mol Gen Genet. 1991;228(1–2):113–124. doi: 10.1007/BF00282455
   PubMedGoogle Scholar
• Ferré-D’Amaré AR. The glmS ribozyme: use of a small molecule coenzyme by a gene-regulatory RNA. Quart Rev Biophys [internet]. 2010 [cited 2022 Dec 27];43(4):423–447. Available from: https://www.cambridge.org/core/product/identifier/S0033583510000144/type/journal_article
   Google Scholar
• Deigan KE, Ferré-D’Amaré F-D. Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs. Acc Chem Res. 2011;44(12):1329–1338. doi: 10.1021/ar200039b
   PubMed Web of Science ®Google Scholar
• Komatsuzawa H, Fujiwara T, Nishi H, et al. The gate controlling cell wall synthesis in Staphylococcus aureus. Mol Microbiol. 2004;53(4):1221–1231. doi: 10.1111/j.1365-2958.2004.04200.x
   PubMed Web of Science ®Google Scholar
• Stängle D, Silkenath B, Gehle P, et al. Carba-sugar analogs of glucosamine-6-phosphate: new activators for the glmS riboswitch. Chemistry A European J. 2023;29(3):e202202378. doi: 10.1002/chem.202202378
   PubMed Web of Science ®Google Scholar
• Li Z, Zhang Y, Sui S, et al. Targeting HMGB3/hTERT axis for radioresistance in cervical cancer. J Exp Clin Cancer Res [internet]. 2020 [cited 2023 Apr 21];39(1):1–17.
   PubMed Web of Science ®Google Scholar
• Kido K, Yamanaka S, Nakano S, et al. AirID, a novel proximity biotinylation enzyme, for analysis of protein-protein interactions. Elife. 2020;9:e54983. doi: 10.7554/eLife.54983
   PubMed Web of Science ®Google Scholar
• Perez-Riverol Y, Bai J, Bandla C, et al. The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. Nucleic Acids Res. 2022;50(D1):D543–D552. doi: 10.1093/nar/gkab1038
   PubMed Web of Science ®Google Scholar
• Tanhaeian A, Azghandi M, Mousavi Z, et al. Expression of thanatin in HEK293 Cells and investigation of its antibacterial effects on some human pathogens. Protein Pept Lett. 2020;27(1):41–47. doi: 10.2174/0929866526666190822162140
   PubMed Web of Science ®Google Scholar
• Zeng L, Wang Y-L, Wang F, et al. Construction of the POT1 promoter report gene vector, and the effect and underlying mechanism of the POT1 promoter in regulating telomerase and telomere length. Oncol Lett. 2017;14:7232–7240. doi: 10.3892/ol.2017.7127
   PubMed Web of Science ®Google Scholar
• Young TL, Whisenhunt KN, LaMartina SM, et al. Sonic hedgehog intron variant associated with an unusual pediatric cortical cataract. Invest Ophthalmol Vis Sci [internet]. 2022 [cited 2023 May 11];63(6):25. Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9234370/
   PubMed Web of Science ®Google Scholar
• Zhang J, Zhao L, Li Y, et al. Circadian clock regulates granulosa cell autophagy through NR1D1-mediated inhibition of ATG5. American Journal of Physiology-Cell Physiology [internet]. 2022 [cited 2023 Jun 1];322(2):C231–C245.
   PubMed Web of Science ®Google Scholar
• Baba T, Bae T, Schneewind O, et al. Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: polymorphism and evolution of two major pathogenicity islands. J Bacteriol. 2008;190(1):300–310. doi: 10.1128/JB.01000-07
   PubMed Web of Science ®Google Scholar
• Bae T, Schneewind O. Allelic replacement in Staphylococcus aureus with inducible counter-selection. Plasmid [Internet]. 2006 [cited 2023 Oct 21];55(1):58–63. doi:10.1016/j.plasmid.2005.05.005
   PubMed Web of Science ®Google Scholar
• Zhang L, Zou W, Ni M, et al. Development and application of two inducible expression systems for Streptococcus suis. Microbiol Spectr [Internet]. 2022 [cited 2023 Sep 27];10(4):e00363–22.
   PubMed Web of Science ®Google Scholar
• Imran M, Liu T, Wang Z, et al. Evolutionary conservation of nested MIR159 structural microRNA genes and their promoter characterization in Arabidopsis thaliana. Frontiers in plant science [Internet]. 2022 [cited 2023 May 15];13. Available from 10.3389/fpls.2022.948751
   Google Scholar
• Jiang L, Yi T, Shen Z, et al. Aloe-emodin attenuates Staphylococcus aureus pathogenicity by interfering with the oligomerization of α-toxin. Front Cell Infect Microbiol. 2019;9:157. doi: 10.3389/fcimb.2019.00157
   PubMed Web of Science ®Google Scholar
• Liang H, He K, Li T, et al. Mechanism and antibacterial activity of vine tea extract and dihydromyricetin against Staphylococcus aureus. Sci Rep. 2020;10(1):21416. doi: 10.1038/s41598-020-78379-y
   PubMed Web of Science ®Google Scholar
• Zheng X, Chen L, Zeng W, et al. Antibacterial and anti-biofilm efficacy of Chinese Dragon’s blood against Staphylococcus aureus isolated from infected wounds Isolated From Infected Wounds. Frontiers in Microbiology [Internet] Front Microbiol. 2021 [cited 2023 Aug 2];12.
   Web of Science ®Google Scholar
• Grossman AB, Burgin DJ, Rice KC. Quantification of Staphylococcus aureus biofilm formation by crystal violet and confocal microscopy [Internet]. In: Rice K, editor. Staphylococcus aureus: methods and protocols. New York (NY): Springer US; 2021 [cited 2023 Aug 3]. p. 69–78.
   Google Scholar
• Liu H, Shang W, Hu Z, et al. A novel SigB(Q225P) mutation in Staphylococcus aureus retains virulence but promotes biofilm formation. Emerg Microbes Infect [Internet] 2018 [cited 2023 Jun 2];7:1–12.
   PubMed Web of Science ®Google Scholar
• Qi M, Liu Q, Liu Y, et al. Staphylococcus aureus biofilm inhibition by high voltage prick electrostatic field (HVPEF) and the mechanism investigation. International Journal of Food Microbiology [internet]. 2022 [cited 2023 Aug 4];362:109499. Available from: https://www.sciencedirect.com/science/article/pii/S016816052100458X
   PubMed Web of Science ®Google Scholar
• Wu S, Qin B, Deng S, et al. CodY is modulated by YycF and affects biofilm formation in Staphylococcus aureus. Front Microbiol [Internet]. 2022 [cited 2023 Jun 16];13:967567. 10.3389/fmicb.2022.967567
   PubMed Web of Science ®Google Scholar
• Cui J, Zhang H, Mo Z, et al. Cell wall thickness and the molecular mechanism of heterogeneous vancomycin-intermediate Staphylococcus aureus. Lett Appl Microbiol. 2021;72(5):604–609. doi: 10.1111/lam.13456
   PubMed Web of Science ®Google Scholar
• Wang Y, Lau PC. Sequence and expression of an isocitrate dehydrogenase-encoding gene from a polycyclic aromatic hydrocarbon oxidizer, sphingomonas yanoikuyae B1. Gene. 1996;168:15–21. doi: 10.1016/0378-1119(95)00732-6
   PubMed Web of Science ®Google Scholar
• Traykovska M, Popova KB, Penchovsky R. Targeting glmS ribozyme with chimeric antisense oligonucleotides for antibacterial drug development. ACS synth biol [Internet]. 2021 [cited 2023 Feb 15];10(11):3167–3176.
   PubMed Web of Science ®Google Scholar
• Lünse CE, Schmidt MS, Wittmann V, et al. Carba-sugars activate the glmS-riboswitch of Staphylococcus aureus. ACS Chem Biol. 2011;6(7):675–678. doi: 10.1021/cb200016d
   PubMed Web of Science ®Google Scholar
• Klein DJ, AR F-D. Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science. 2006;313(5794):1752–1756. doi: 10.1126/science.1129666
   PubMed Web of Science ®Google Scholar
• Chen Q, Wang H, Li Z, et al. Circular RNA ACTN4 promotes intrahepatic cholangiocarcinoma progression by recruiting YBX1 to initiate FZD7 transcription. J Hepatol [internet]. 2022 [cited 2023 May 30];76(1):135–147. 10.1016/j.jhep.2021.08.027
   PubMed Web of Science ®Google Scholar
• Twarda-Clapa A, Olczak A, Białkowska AM, et al. Advanced glycation end-products (AGEs): formation, chemistry, classification, receptors, and diseases related to AGEs. Cells. 2022;11(8):1312. doi: 10.3390/cells11081312
   PubMed Web of Science ®Google Scholar
• Takeuchi M, Sakasai-Sakai A, Takata T, et al. Effects of Toxic AGEs (TAGE) on human health. Cells. 2022;11(14):2178. doi: 10.3390/cells11142178
   PubMed Web of Science ®Google Scholar
• Sellegounder D, Zafari P, Rajabinejad M, et al. Advanced glycation end products (AGEs) and its receptor, RAGE, modulate age-dependent COVID-19 morbidity and mortality. A review and hypothesis. Int Immunopharmacol. 2021;98:107806. doi: 10.1016/j.intimp.2021.107806
   PubMed Web of Science ®Google Scholar
• Tran HT, Bonilla CY. SigB-regulated antioxidant functions in gram‐positive bacteria. World J Microbiol Biotechnol [Internet]. 2021 [cited 2023 Aug 15];37(3):38. Available from 10.1007/s11274-021-03004-7
   PubMed Web of Science ®Google Scholar
• McCown PJ, Roth A, Breaker RR. An expanded collection and refined consensus model of glmS ribozymes. RNA. 2011;17(4):728–736. doi: 10.1261/rna.2590811
   PubMed Web of Science ®Google Scholar
• Liu C-I, Liu GY, Song Y, et al. A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence. Science. 2008;319(5868):1391–1394. doi: 10.1126/science.1153018
   PubMed Web of Science ®Google Scholar