Effects of bacterial inoculation on lignocellulose degradation and microbial properties during cow dung composting

References

• Awasthi MK, Duan Y, Awasthi SK, et al. Effect of biochar and bacterial inoculum additions on cow dung composting. Biores Technol. 2020 Feb;297:122407.
   PubMed Web of Science ®Google Scholar
• Hossain KM, Razi IE, Halimi SM, et al. Microbial composting of rice straw for improved stability and bioefficacy. Plant, Soil and Microbes. 2016 Mar;271–228.
   Google Scholar
• Yang X, Liu E, Zhu X, et al. Impact of composting methods on nitrogen retention and losses during dairy manure composting. Int J Environ Res Public Health. 2019 Sep 9;16(18):3324. DOI:10.3390/ijerph16183324.
   PubMed Web of Science ®Google Scholar
• Awasthi MK, Wang M, Chen H, et al. Heterogeneity of biochar amendment to improve the carbon and nitrogen sequestration through reduce the greenhouse gases emissions during sewage sludge composting. Bioresour Technol. 2017 Jan;224:428–438. DOI:10.1016/j.biortech.2016.11.014.
   PubMed Web of Science ®Google Scholar
• Osman AI, Fawzy S, Farghali M, et al. Biochar for agronomy, animal farming, anaerobic digestion, composting, water treatment, soil remediation, construction, energy storage, and carbon sequestration: a review. Environ Chem Lett. 2022 May;97–101. DOI:10.1007/s10311-022-01424-x.
   PubMed Web of Science ®Google Scholar
• Mao H, Zhang H, Fu Q, et al. Effects of four additives in pig manure composting on greenhouse gas emission reduction and bacterial community change. Bioresour Technol. 2019 Nov;292:121896. DOI:10.1016/j.biortech.2019.121896.
   PubMed Web of Science ®Google Scholar
• Hachicha R, Rekik O, Hachicha S, et al. Co-composting of spent coffee ground with olive mill wastewater sludge and poultry manure and effect of Trametes versicolor inoculation on the compost maturity. Chemosphere. 2012 Jul;88(6):677–682.
   PubMed Web of Science ®Google Scholar
• Yang PP, Yin H, Peng H, et al. Effects of exogenous microorganism inoculation on efficiency and bacterial community structure of sludge composting. Huan Jing Ke Xue. 2017;38:3536–3543.
   PubMedGoogle Scholar
• Zhao Y, Li W, Chen L, et al. Effect of enriched thermotolerant nitrifying bacteria inoculation on reducing nitrogen loss during sewage sludge composting. Bioresour Technol. 2020 Sep;311:123461. DOI:10.1016/j.biortech.2020.123461.
   PubMed Web of Science ®Google Scholar
• He XS, Xi BD, Jiang YH, et al. Elemental and spectroscopic methods with chemometric analysis for characterizing composition and transformation of dissolved organic matter during chicken manure composting. Environ Technol. 2012 Sep;33(16–18):2033–2039. DOI:10.1080/09593330.2012.655427.
   PubMedGoogle Scholar
• Zoghlami A, Paës G. Lignocellulosic biomass: understanding recalcitrance and predicting hydrolysis. 2019 Dec 18:7 874. DOI:10.3389/fchem.2019.00874
   Google Scholar
• Gabhane J, William SP, Bidyadhar R, et al. Additives aided composting of green waste: effects on organic matter degradation, compost maturity, and quality of the finished compost. Bioresour Technol. 2012 Jun;114:382–388. DOI:10.1016/j.biortech.2012.02.040.
   PubMed Web of Science ®Google Scholar
• Zhou C, Liu Z, Huang ZL, et al. A new strategy for co-composting dairy manure with rice straw: addition of different inocula at three stages of composting. Waste Manag. 2015 Jun;40:38–43. DOI:10.1016/j.wasman.2015.03.016.
   PubMed Web of Science ®Google Scholar
• Kuroda K, Tanaka A, Furuhashi K, et al. Application of Bacillus sp TAT105 to reduce ammonia emissions during pilot-scale composting of swine manure. Biosci Biotechnol Biochem. 2017 Dec;81(12):2400–2406. DOI:10.1080/09168451.2017.1389607.
   PubMed Web of Science ®Google Scholar
• Wang Y, Bi L, Liao Y, et al. Influence and characteristics of Bacillus stearothermophilus in ammonia reduction during layer manure composting. Ecotoxicol Environ Saf. 2019 Sep 30;180:80–87. 10.1016/j.ecoenv.2019.04.066.
   PubMed Web of Science ®Google Scholar
• Wan L, Wang X, Cong C, et al. Effect of inoculating microorganisms in chicken manure composting with maize straw. Bioresour Technol. 2020 Apr;301:122730. DOI:10.1016/j.biortech.2019.122730.
   PubMed Web of Science ®Google Scholar
• Yu J, Gu J, Wang X, et al. Effects of inoculation with lignocellulose-degrading microorganisms on nitrogen conversion and denitrifying bacterial community during aerobic composting. Bioresour Technol. 2020 Oct;313:123664. DOI:10.1016/j.biortech.2020.123664.
   PubMed Web of Science ®Google Scholar
• Ballardo C, Vargas-García MDC, Sánchez A, et al. Adding value to home compost: biopesticide properties through Bacillus thuringiensis inoculation. Waste Manag. 2020 Apr 1;106:32–43. DOI:10.1016/j.wasman.2020.03.003.
   PubMed Web of Science ®Google Scholar
• Zhao Y, Lu Q, Wei Y, et al. Effect of actinobacteria agent inoculation methods on cellulose degradation during composting based on redundancy analysis. Bioresour Technol. 2016 Nov;219:196–203. DOI:10.1016/j.biortech.2016.07.117.
   PubMed Web of Science ®Google Scholar
• Liu J, Yang J, Wang R, et al. Comparative characterization of extracellular enzymes secreted by Phanerochaete chrysosporium during solid-state and submerged fermentation. Int j biol macromol. 2020 Jun 1;152:288–294. 10.1016/j.ijbiomac.2020.02.256.
   PubMed Web of Science ®Google Scholar
• Xie Y, Zhou L, Dai J, et al. Effects of the C/N ratio on the microbial community and lignocellulose degradation, during branch waste composting. Bioprocess Biosyst Eng. 2022 Jul;45(7):1163–1174. DOI:10.1007/s00449-022-02732-w.
   PubMed Web of Science ®Google Scholar
• Meng L, Li W, Zhang S, et al. Feasibility of co-composting of sewage sludge, spent mushroom substrate and wheat straw. Bioresour Technol. 2017 Feb;226:39–45. DOI:10.1016/j.biortech.2016.11.054.
   PubMed Web of Science ®Google Scholar
• Ouyang J-X, Shi Z, Zhong H, et al. Static aerobic composting of municipal sewage sludge with forced ventilation: using matured compost as bulking conditioner. J Cent South Univ. 2014 Feb;21(1):303–309.
   Web of Science ®Google Scholar
• Van-Soest PJ, Robertson JB, Lewis BA. Methods for dietary fiber, neutral detergent fiber, and nonstarch polysaccharides in relation to animal nutrition. J Dairy Sci. 1991 Oct;74(10):3583–3597. DOI:10.3168/jds.S0022-0302(91)78551-2.
   PubMed Web of Science ®Google Scholar
• Li J, Wang X, Cong C, et al. Inoculation of cattle manure with microbial agents increases efficiency and promotes maturity in composting. 3 Biotech. 2020 Mar;10(3):128.
   PubMedGoogle Scholar
• Gardes M, Bruns TD. ITS primers with enhanced specificity for basidiomycetes–application to the identification of mycorrhizae and rusts. Mol Ecology. 1993 Apr;2(2):113–118. DOI:10.1111/j.1365-294x.1993.tb00005.x.
   PubMed Web of Science ®Google Scholar
• Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013 Oct;10(10):996–998. DOI:10.1038/nmeth.2604.
   PubMed Web of Science ®Google Scholar
• Masella AP, Bartram AK, Truszkowski JM, et al. Pandaseq: paired-end assembler for illumina sequences. BMC Bioinf. 2012 Feb 14;13:31. DOI:10.1186/1471-2105-13-31.
   PubMed Web of Science ®Google Scholar
• Bolger AM, Lohse M. Usadel B Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014 Aug 1;30(15):2114–2120. DOI:10.1093/bioinformatics/btu170.
   PubMed Web of Science ®Google Scholar
• Estaki M, Jiang L, Bokulich NA, et al. QIIME 2 enables comprehensive end-to-end analysis of diverse microbiome data and comparative studies with publicly available data. Curr Protoc Bioinformatics. 2020 Jun;70(1):e100. DOI:10.1002/cpbi.100.
   PubMedGoogle Scholar
• Wan L, Wang X, Cong C, et al. Effect of inoculating microorganisms in chicken manure composting with maize straw. Bioresour Technol. 2020 Apr;301:122730. DOI:10.1016/j.biortech.2019.122730.
   PubMed Web of Science ®Google Scholar
• Nissim I, Shohat T, Inbar Y. From dumping to sanitary landfills–solid waste management in Israel. Waste Manag. 2005;25(3):323–327.
   PubMed Web of Science ®Google Scholar
• Guardia A, Mallard P, Marin A, et al. Comparison of five organic wastes regarding their behaviour during composting: part 2, nitrogen dynamic. Waste Manag. 2010 Mar;30(3):415–425. DOI:10.1016/j.wasman.2009.10.018.
   PubMed Web of Science ®Google Scholar
• Zhao Y, Zhao Y, Zhang Z, et al. Effect of thermo-tolerant actinomycetes inoculation on cellulose degradation and the formation of humic substances during composting. Waste Manag. 2017 Oct 68;64–73. DOI:10.1016/j.wasman.2017.06.022.
   PubMed Web of Science ®Google Scholar
• Bi X, Li B, Xu X, et al. Response of vegetation and soil characteristics to grazing disturbance in mountain meadows and temperate typical steppe in the arid regions of Central Asian, Xinjiang. Int J Environ Public Health. 2020 Jun 25;17(12):4572. DOI:10.3390/ijerph17124572.
   PubMed Web of Science ®Google Scholar
• Bernal MP, Alburquerque JA, Moral R. Composting of animal manures and chemical criteria for compost maturity assessment: a review. Bioresour Technol. 2009 Nov;100(22):5444–5453. DOI:10.1016/j.biortech.2008.11.027.
   PubMed Web of Science ®Google Scholar
• Wu J, Zhang A, Li G, et al. Effect of different components of single superphosphate on organic matter degradation and maturity during pig manure composting. Sci Total Environ. 2019 Jan 1;646:587–594. DOI:10.1016/j.scitotenv.2018.07.336.
   PubMed Web of Science ®Google Scholar
• Zhao Y, Lu Q, Wei, et al. Effect of actinobacteria agent inoculation methods on cellulose degradation during composting based on redundancy analysis. Bioresour Technol. 2016 Nov;219:196–203.
   PubMed Web of Science ®Google Scholar
• Mei J, Shen X, Gang L, et al. A novel lignin degradation bacteria Bacillus amyloliquefaciens SL-7 used to degrade straw lignin efficiently. Bioresour Technol. 2020 Aug;310:123445. DOI:10.1016/j.biortech.2020.123445.
   PubMed Web of Science ®Google Scholar
• Zhu N, Gao J, Liang D, et al. Thermal pretreatment enhances the degradation and humification of lignocellulose by stimulating thermophilic bacteria during dairy manure composting. Bioresour Technol. 2021 Jan;319:124149. DOI:10.1016/j.biortech.2020.124149.
   PubMed Web of Science ®Google Scholar
• Xiao Y, Zeng GM, Yang ZH, et al. Continuous thermophilic composting (CTC) for rapid biodegradation and maturation of organic municipal solid waste. Bioresour Technol. 2009 Oct;100(20):4807–4813. DOI:10.1016/j.biortech.2009.05.013.
   PubMed Web of Science ®Google Scholar
• Wei Y, Wu D, Wei D, et al. Improved lignocellulose-degrading performance during straw composting from diverse sources with actinomycetes inoculation by regulating the key enzyme activities. Bioresour Technol. 2019 Jan;271:66–74. DOI:10.1016/j.biortech.2018.09.081.
   PubMed Web of Science ®Google Scholar
• Wang X, Zhao Y, Wang H, et al. Reducing nitrogen loss and phytotoxicity during beer vinasse composting with biochar addition. Waste Manag. 2017 Mar;61:150–156. DOI:10.1016/j.wasman.2016.12.024.
   PubMed Web of Science ®Google Scholar
• Awasthi MK, Wang Q, Awasthi SK, et al. Influence of medical stone amendment on gaseous emissions, microbial biomass and abundance of ammonia oxidizing bacteria genes during biosolids composting. Biores Technol. 2018 Jan;247:970–979.
   PubMed Web of Science ®Google Scholar
• Chowdhury S, Bolan NS, Seshadri B, et al. Co-composting solid biowastes with alkaline materials to enhance carbon stabilization and revegetation potential. Environ Sci Pollut Res. 2016 Apr;23(8):7099–7110. DOI:10.1007/s11356-015-5411-9.
   PubMed Web of Science ®Google Scholar
• Hu T, Wang X, Zhen L, et al. Effects of inoculating with lignocellulose-degrading consortium on cellulose-degrading genes and fungal community during co-composting of spent mushroom substrate with swine manure. Bioresour Technol. 2019 Nov;291:121876. DOI:10.1016/j.biortech.2019.121876.
   PubMed Web of Science ®Google Scholar
• Luo Y, Liang J, Zeng G, et al. Seed germination test for toxicity evaluation of compost: its roles, problems and prospects. Waste Manag. 2018 Jan;71:109–114. DOI:10.1016/j.wasman.2017.09.023.
   PubMed Web of Science ®Google Scholar
• Fierer N, Bradford MA, Jackson RB. Toward an ecological classification of soil bacteria. Ecology. 2007 Jun;88(6):1354–1364.
   PubMed Web of Science ®Google Scholar
• Cardinali-Rezende J, Colturato LF, Colturato TD, et al. Prokaryotic diversity and dynamics in a full-scale municipal solid waste anaerobic reactor from start-up to steady-state conditions. Bioresour Technol. 2012 Sep;119:373–383. DOI:10.1016/j.biortech.2012.05.136.
   PubMed Web of Science ®Google Scholar
• Jacinto JP, Penas D, Guerra J, et al. Dps-DNA interaction in Marinobacter hydrocarbonoclasticus protein: effect of a single-charge alteration. Eur Biophys J. 2021 May;50(3–4):513–521. DOI:10.1007/s00249-021-01538-0.
   PubMed Web of Science ®Google Scholar
• Kim KK, Lee JS, Stevens DA. Microbiology and epidemiology of Halomonas species. Future Microbiol. 2013 Dec;8(12):1559–1573. DOI:10.2217/fmb.13.108.
   PubMed Web of Science ®Google Scholar
• Mhiri S, Bouanane-Darenfed A, Jemli S, et al. A thermophilic and thermostable xylanase from Caldicoprobacter algeriensis: recombinant expression, characterization and application in paper biobleaching. Int j biol macromol. 2020 Dec 1;164:808–817. DOI:10.1016/j.ijbiomac.2020.07.162.
   PubMed Web of Science ®Google Scholar
• Ungkulpasvich U, Uke A, Baramee S, et al. Draft genome sequence data of the anaerobic, thermophilic, chitinolytic bacterium strain UUS1-1 belonging to genus Hydrogenispora of the uncultured taxonomic OPB54 cluster. Data Brief. 2020 Nov 14;33:106528. DOI:10.1016/j.dib.2020.106528.
   PubMed Web of Science ®Google Scholar
• Wang R, Lv N, Li C, et al. Novel strategy for enhancing acetic and formic acids generation in acidogenesis of anaerobic digestion via targeted adjusting environmental niches. Water Res. 2021 Apr 1;193:116896. 10.1016/j.watres.2021.116896.
   PubMed Web of Science ®Google Scholar
• Takeuchi M, Kamagata Y, Oshima K, et al. Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum. Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3240–3246. DOI:10.1099/ijs.0.063503-0.
   PubMedGoogle Scholar
• Kontkanen H, Reinikainen T, Saloheimo M. Cloning and expression of a Melanocarpus albomyces steryl esterase gene in Pichia pastoris and Trichoderma reesei. Biotechnol Bioeng. 2006 Jun 20;94(3):407–415. DOI:10.1002/bit.20686.
   PubMed Web of Science ®Google Scholar
• Linkies A, Jacob S, Zink P, et al. Characterization of cultural traits and fungicidal activity of strains belonging to the fungal genus Chaetomium. J Appl Microbiol. 2021 Jul;131(1):375–391. DOI:10.1111/jam.14946.
   PubMed Web of Science ®Google Scholar
• Faust K, Raes J. Microbial interactions: from networks to models. Nat Rev Microbiol. 2012 Jul 16;10(8):538–550. DOI:10.1038/nrmicro2832.
   PubMed Web of Science ®Google Scholar