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Research Article

African swine fever virus – variants on the rise

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Article: 2146537 | Received 07 Sep 2022, Accepted 08 Nov 2022, Published online: 22 Dec 2022

References

  • Peck KM, Lauring AS. Complexities of viral mutation rates. J Virol. 2018: 92. doi:10.1128/JVI.01031-17.
  • Duffy S, Shackelton LA, Holmes EC. Rates of evolutionary change in viruses: patterns and determinants. Nat Rev Genet. 2008;9:267–276.
  • Duarte CM, Ketcheson DI, Eguíluz VM, et al. Rapid evolution of SARS-CoV-2 challenges human defenses. Sci Rep. 2022;12:6457.
  • Forth JH, Forth LF, Blome S, et al. African swine fever whole-genome sequencing—Quantity wanted but quality needed. PLoS Pathog. 2020;16:e1008779.
  • Alonso C, Borca M, Dixon L, et al. Ictv virus taxonomy profile: asfarviridae. J Gen Virol. 2018;99:613–614.
  • Eustace Montgomery R. On A Form of Swine Fever Occurring in British East Africa (Kenya Colony). J Comp Pathol Ther. 1921;34:159–191.
  • Plowright W, Parker J, Peirce MA. African swine fever virus in ticks (Ornithodoros moubata, murray) collected from animal burrows in Tanzania. Nature. 1969;221:1071–1073.
  • Wilkinson PJ, Pegram RG, Perry BD, et al. The distribution of African swine fever virus isolated from Ornithodoros moubata in Zambia. Epidemiol Infect. 1988;101:547–564.
  • Coetzer JAW, Thomson GR, Tustin RC. Infectious diseases of livestock: With special reference to Southern Africa. Cape Town: Oxford University Press; 1994.
  • Penrith ML, Thomson GR, Bastos ADS, et al. An investigation into natural resistance to African swine fever in domestic pigs from an endemic area in Southern Africa. Revue Scientifique et Technique de l'OIE. 2004;23:965–977.
  • Blome S, Gabriel C, Beer M. Pathogenesis of African swine fever in domestic pigs and European wild boar. Virus Res. 2013;173:122–130.
  • Blome S, Gabriel C, Dietze K, et al. High virulence of African swine fever virus Caucasus isolate in European wild boars of all ages. Emerging Infect. Dis. 2012;18:708.
  • Gabriel C, Blome S, Malogolovkin A, et al. Characterization of African swine fever virus Caucasus isolate in European wild boars. Emerging Infect Dis. 2011;17:2342–2345.
  • Dixon LK, Chapman DAG, Netherton CL, et al. African swine fever virus replication and genomics. Virus Res. 2013;173:3–14.
  • Forth JH, Forth LF, Lycett S, et al. Identification of African swine fever virus-like elements in the soft tick genome provides insights into the virus’ evolution. BMC Biol. 2020;18:136.
  • Forth JH, Tignon M, Cay AB, et al. Comparative analysis of whole-genome sequence of african swine fever virus Belgium 2018/1. Emerg Infect Dis. 2019;25:1249–1252.
  • Gallardo C, Fernández-Pinero J, Pelayo V, et al. Genetic variation among African swine fever genotype II viruses, eastern and central Europe. Emerging Infect Dis. 2014;20:1544–1547.
  • Sauter-Louis C, Forth JH, Probst C, et al. Joining the club: First detection of African swine fever in wild boar in Germany. Transbound Emerg Dis. 2021;68:1744–1752.
  • Mazur-Panasiuk N, Woźniakowski G, Niemczuk K. The first complete genomic sequences of African swine fever virus isolated in Poland. Sci Rep. 2019;9:4556.
  • Mazur-Panasiuk N, Woźniakowski G. The unique genetic variation within the O174L gene of Polish strains of African swine fever virus facilitates tracking virus origin. Arch Virol. 2019;164:1667–1672.
  • Mazur-Panasiuk N, Walczak M, Juszkiewicz M, et al. The Spillover of African Swine Fever in Western Poland Revealed Its Estimated Origin on the Basis of O174L, K145R, MGF 505-5R and IGR I73R/I329L Genomic Sequences. Viruses. 2020: 12. doi:10.3390/v12101094.
  • Tignon M, Gallardo C, Iscaro C, et al. Development and inter-laboratory validation study of an improved new real-time PCR assay with internal control for detection and laboratory diagnosis of African swine fever virus. J Virol Methods. 2011;178:161–170.
  • Hoffmann B, Depner K, Schirrmeier H, et al. A universal heterologous internal control system for duplex real-time RT-PCR assays used in a detection system for pestiviruses. J Virol Methods. 2006;136:200–209.
  • Antipov D, Korobeynikov A, McLean JS, et al. hybridSPAdes: hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinformatics. 2016;32:1009–1015.
  • Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772–780.
  • Hayes BH, Andraud M, Salazar LG, et al. Mechanistic modelling of African swine fever: A systematic review. Prev Vet Med. 2021;191:105358.
  • Lange M, Reichold A, Thulke H-H. Modelling advanced knowledge of African swine fever, resulting surveillance patterns at the population level and impact on reliable exit strategy definition. EFS3. 2021: 18. doi:10.2903/sp.efsa.2021.EN-6429.
  • Lange M, Thulke H-H. Elucidating transmission parameters of African swine fever through wild boar carcasses by combining spatio-temporal notification data and agent-based modelling. Stoch Environ Res Risk Assess. 2017;31:379–391.
  • Probst C, Globig A, Knoll B, et al. Behaviour of free ranging wild boar towards their dead fellows: potential implications for the transmission of African swine fever. R Soc Open Sci. 2017;4:170054.
  • Podgórski T, Apollonio M, Keuling O. Contact rates in wild boar populations: Implications for disease transmission. J Wildl Manage. 2018;82:1210–1218.
  • Pittiglio C, Khomenko S, Beltran-Alcrudo D. Wild boar mapping using population-density statistics: From polygons to high resolution raster maps. PLoS One. 2018;13:e0193295.
  • Forth JH, Forth LF, King J, et al. A deep-sequencing workflow for the fast and efficient generation of high-quality african swine fever virus whole-genome sequences. Viruses. 2019: 11.
  • Showalter AK, Byeon IJ, Su MI, et al. Solution structure of a viral DNA polymerase X and evidence for a mutagenic function. Nat Struct Biol. 2001;8:942–946.
  • Chen Y, Zhang J, Liu H, et al. Unique 5′-P recognition and basis for dG:dGTP misincorporation of ASFV DNA polymerase X. PLoS Biol. 2017;15:e1002599.
  • Redrejo-Rodríguez M, Rodríguez JM, Suárez C, et al. Involvement of the reparative DNA polymerase Pol X of african swine fever virus in the maintenance of viral genome stability In vivo. J Virol. 2013;87:9780–9787.
  • Oliveros M, Yáñez RJ, Salas ML, et al. Characterization of an African swine fever virus 20-kDa DNA polymerase involved in DNA repair. J Biol Chem. 1997;272:30899–30910.
  • Zani L, Forth JH, Forth L, et al. Deletion at the 5'-end of Estonian ASFV strains associated with an attenuated phenotype. Sci Rep. 2018;8:6510.
  • Golding JP, Goatley L, Goodbourn S, et al. Sensitivity of African swine fever virus to type I interferon is linked to genes within multigene families 360 and 505. Virology. 2016;493:154–161.
  • O'Donnell V, Holinka LG, Gladue DP, et al. African swine fever virus Georgia isolate harboring deletions of MGF360 and MGF505 genes Is attenuated in swine and confers protection against challenge with virulent parental virus. J Virol. 2015;89:6048–6056.
  • Afonso CL, Piccone ME, Zaffuto KM, et al. African swine fever virus multigene family 360 and 530 genes affect host interferon response. J Virol. 2004;78:1858–1864.
  • Lamarche BJ, Kumar S, Tsai M-D. Asfv DNA polymerase X Is extremely error-prone under diverse assay conditions and within multiple DNA sequence contexts. Biochemistry. 2006;45:14826–14833.
  • García-Escudero R, García-Díaz M, Salas ML, et al. DNA polymerase X of African swine fever virus: insertion fidelity on gapped DNA substrates and AP lyase activity support a role in base excision repair of viral DNA. J Mol Biol. 2003;326:1403–1412.
  • Nguyen L-T, Schmidt HA, von Haeseler A, et al.. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32:268–274.
  • Hoang DT, Chernomor O, von Haeseler A, et al. Ufboot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 2018;35:518–522.