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Coronaviruses

Coronavirus RNA-dependent RNA polymerase interacts with the p50 regulatory subunit of host DNA polymerase delta and plays a synergistic role with RNA helicase in the induction of DNA damage response and cell cycle arrest in the S phase

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Article: e2176008 | Received 05 Sep 2022, Accepted 30 Jan 2023, Published online: 15 Feb 2023

References

  • Fung TS, Liu DX. Human coronavirus: host-pathogen interaction. Annu Rev Microbiol. 2019 Sep 8;73:529–557.
  • Fung TS, Liu DX. Similarities and dissimilarities of COVID-19 and other coronavirus diseases. Annu Rev Microbiol. 2021 Oct 8;75:19–47.
  • Liu DX, Ng YL, Fung TS. Infectious bronchitis virus. In: Samal SK, editor. Avian virology: current research and future trends. Norfolk, UK: Caister Academic Press; 2019.
  • Liu DX, Fung TS, Chong KK, et al. Accessory proteins of SARS-CoV and other coronaviruses. Antiviral Res. 2014 Sep;109:97–109.
  • Thiel V, Ivanov KA, Putics Á, et al. Mechanisms and enzymes involved in SARS coronavirus genome expression. J Gen Virol. 2003 Sep;84(Pt 9):2305–2315.
  • Bagga S, Bouchard MJ. Cell cycle regulation during viral infection. Methods Mol Biol (Clifton, NJ). 2014;1170:165–227.
  • Nascimento R, Costa H, Parkhouse RM. Virus manipulation of cell cycle. Protoplasma. 2012 Jul;249(3):519–528.
  • Chen CJ, Sugiyama K, Kubo H, et al. Murine coronavirus nonstructural protein p28 arrests cell cycle in G0/G1 phase. J Virol. 2004 Oct;78(19):10410–10419.
  • Ding L, Huang Y, Du Q, et al. TGEV nucleocapsid protein induces cell cycle arrest and apoptosis through activation of p53 signaling. Biochem Biophys Res Commun. 2014 Mar 7;445(2):497–503.
  • Li FQ, Tam JP, Liu DX. Cell cycle arrest and apoptosis induced by the coronavirus infectious bronchitis virus in the absence of p53. Virology. 2007 Sep 1;365(2):435–445.
  • Dove B, Brooks G, Bicknell K, et al. Cell cycle perturbations induced by infection with the coronavirus infectious bronchitis virus and their effect on virus replication. J Virol. 2006 Apr;80(8):4147–4156.
  • Xu LH, Huang M, Fang SG, et al. Coronavirus infection induces DNA replication stress partly through interaction of its nonstructural protein 13 with the p125 subunit of DNA polymerase δ. J Biol Chem. 2011 Nov 11;286(45):39546–39559.
  • Lee M, Wang X, Zhang S, et al. Regulation and modulation of human DNA polymerase δ activity and function. Genes. 2017 Jul 24;8(7):190.
  • Zhang S, Zhou Y, Trusa S, et al. A novel DNA damage response: rapid degradation of the p12 subunit of DNA polymerase delta. J Biol Chem. 2007 May 25;282(21):15330–15340.
  • Meng X, Zhou Y, Zhang S, et al. DNA damage alters DNA polymerase delta to a form that exhibits increased discrimination against modified template bases and mismatched primers. Nucleic Acids Res. 2009 Feb;37(2):647–657.
  • Lim KP, Liu DX. Characterization of the two overlapping papain-like proteinase domains encoded in gene 1 of the coronavirus infectious bronchitis virus and determination of the C-terminal cleavage site of an 87-kDa protein. Virology. 1998 Jun 5;245(2):303–312.
  • Ng LF, Liu DX. Identification of a 24-kDa polypeptide processed from the coronavirus infectious bronchitis virus 1a polyprotein by the 3C-like proteinase and determination of its cleavage sites. Virology. 1998 Apr 10;243(2):388–395.
  • Fang S, Chen B, Tay FP, et al. An arginine-to-proline mutation in a domain with undefined functions within the helicase protein (Nsp13) is lethal to the coronavirus infectious bronchitis virus in cultured cells. Virology. 2007 Feb 5;358(1):136–147.
  • Xu L, Khadijah S, Fang S, et al. The cellular RNA helicase DDX1 interacts with coronavirus nonstructural protein 14 and enhances viral replication. J Virol. 2010 Sep;84(17):8571–8583.
  • Kinner A, Wu W, Staudt C, et al. Gamma-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin. Nucleic Acids Res. 2008 Oct;36(17):5678–5694.
  • Ward IM, Chen J. Histone H2AX is phosphorylated in an ATR-dependent manner in response to replicational stress. J Biol Chem. 2001 Dec 21;276(51):47759–47762.
  • Su M, Chen Y, Qi S, et al. A mini-review on cell cycle regulation of coronavirus infection. Front Vet Sci. 2020;7:586826.
  • Khandagale P, Peroumal D, Manohar K, et al. Human DNA polymerase delta is a pentameric holoenzyme with a dimeric p12 subunit. Life Sci Alliance. 2019 Apr;2(2):e201900323.
  • Johnson RE, Prakash L, Prakash S. Pol31 and Pol32 subunits of yeast DNA polymerase δ are also essential subunits of DNA polymerase ζ. Proc Natl Acad Sci USA. 2012 Jul 31;109(31):12455–12460.
  • Lee YS, Gregory MT, Yang W. Human Pol ζ purified with accessory subunits is active in translesion DNA synthesis and complements Pol η in cisplatin bypass. Proc Natl Acad Sci USA. 2014 Feb 25;111(8):2954–2959.
  • Lange SS, Wittschieben JP, Wood RD. DNA polymerase zeta is required for proliferation of normal mammalian cells. Nucleic Acids Res. 2012 May;40(10):4473–4482.
  • Gil-Ranedo J, Hernando E, Riolobos L, et al. The mammalian cell cycle regulates parvovirus nuclear capsid assembly. PLoS Pathog. 2015 Jun;11(6):e1004920.
  • Yuan X, Yao Z, Wu J, et al. G1 phase cell cycle arrest induced by SARS-CoV 3a protein via the cyclin D3/pRb pathway. Am J Respir Cell Mol Biol. 2007 Jul;37(1):9–19.
  • Yuan X, Wu J, Shan Y, et al. SARS coronavirus 7a protein blocks cell cycle progression at G0/G1 phase via the cyclin D3/pRb pathway. Virology. 2006 Mar 1;346(1):74–85.
  • Chen CJ, Makino S. Murine coronavirus replication induces cell cycle arrest in G0/G1 phase. J Virol. 2004 Jun;78(11):5658–5669.
  • Ding L, Huang Y, Dai M, et al. Transmissible gastroenteritis virus infection induces cell cycle arrest at S and G2/M phases via p53-dependent pathway. Virus Res. 2013 Dec 26;178(2):241–251.
  • Huang Y, Ding L, Li Z, et al. Transmissible gastroenteritis virus infection induces cell apoptosis via activation of p53 signalling. J Gen Virol. 2013 Aug;94(Pt 8):1807–1817.
  • Bhardwaj K, Liu P, Leibowitz JL, et al. The coronavirus endoribonuclease Nsp15 interacts with retinoblastoma tumor suppressor protein. J Virol. 2012 Apr;86(8):4294–4304.