Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer

References

• Culp MB, Soerjomataram I, Ja E, Bray F, Jemal A. Recent global patterns in prostate cancer incidence and mortality rates. Eur Urol. 2020;77(1):38–9. doi:10.1016/j.eururo.2019.08.005.
   PubMed Web of Science ®Google Scholar
• de Bono JS, Guo C, Gurel B, De Marzo AM, Sfanos KS, de Bono JS, Mani RS, Gil J, Drake CG, Alimonti A. Prostate carcinogenesis: inflammatory storms. Nat Rev Cancer. 2020;20(8):455–469. doi:10.1038/s41568-020-0267-9.
   PubMed Web of Science ®Google Scholar
• Sfanos KS, Sauvageot J, Fedor HL, Dick JD, De Marzo AM, Isaacs WB. A molecular analysis of prokaryotic and viral DNA sequences in prostate tissue from patients with prostate cancer indicates the presence of multiple and diverse microorganisms. Prostate. 2008;68(3):306–320. doi:10.1002/pros.20680.
   PubMed Web of Science ®Google Scholar
• Yow MA, Tabrizi SN, Severi G, Bolton DM, Pedersen J, Longano A, Garland SM, Southey MC, Giles GG. Detection of infectious organisms in archival prostate cancer tissues. BMC Cancer. 2014;14:579. doi:10.1186/1471-2407-14-579.
   PubMed Web of Science ®Google Scholar
• Sutcliffe S, Nevin RL, Pakpahan R, Elliott DJ, Langston ME, De Marzo AM, Gaydos CA, Isaacs WB, Nelson WG, Sokoll LJ, et al. Infectious mononucleosis, other infections and prostate-specific antigen concentration as a marker of prostate involvement during infection. Int J Cancer. 2016;138(9):2221–2230. doi:10.1002/ijc.29966.
   PubMed Web of Science ®Google Scholar
• Kori M, Arga KY. Pathways involved in viral oncogenesis: new perspectives from virus-host protein interactomics. Biochim Biophys Acta Mol Basis Dis. 2020;1866(10):165885. doi:10.1016/j.bbadis.2020.165885.
   PubMed Web of Science ®Google Scholar
• Borchmann S. An atlas of the tissue and blood metagenome in cancer reveals novel links between bacteria, viruses and cancer. Microbiome. 2020;9(1):94. doi:10.1186/s40168-021-01039-4.
   Web of Science ®Google Scholar
• Whitaker NJ, Glenn WK, Sahrudin A, Orde MM, Delprado W, Lawson JS. Human papillomavirus and Epstein Barr virus in prostate cancer: koilocytes indicate potential oncogenic influences of human papillomavirus in prostate cancer. Prostate. 2013;73(3):236–241. doi:10.1002/pros.22562.
   PubMed Web of Science ®Google Scholar
• Ala-Almohadesin A, Mohammadbeygi M, Bahavar A, Mohammadi MA, Mohamadzadeh N, Abolhasani M. Molecular detection of pathogens causing sexually transmissible infections in patients with prostate cancer and Hyperplasia by quantitative TaqMan real-time PCR assay. Clin Lab. 2019;65(7). doi:10.7754/Clin.Lab.2019.181243.
   PubMed Web of Science ®Google Scholar
• Broecker F, Moelling K. The roles of the Virome in cancer. Microorganisms. 2021;9:2538. doi:10.3390/microorganisms9122538.
   PubMedGoogle Scholar
• Nakatsu G, Zhou H, Wkk W, Wong SH, Coker OO, Dai Z, Li X, Szeto C-H, Sugimura N, Lam TYT, et al. Alterations in enteric Virome are associated with colorectal cancer and survival outcomes. Gastroenterology. 2018;155(2):529–541. doi:10.1053/j.gastro.2018.04.018.
   PubMed Web of Science ®Google Scholar
• Marongiu L, Landry JJM, Rausch T, Abba ML, Delecluse S, Delecluse HJ, Allgayer H. Metagenomic analysis of primary colorectal carcinomas and their metastases identifies potential microbial risk factors. Mol Oncol. 2021;15(12):3363–3384. doi:10.1002/1878-0261.13070.
   PubMed Web of Science ®Google Scholar
• Engel K, Wieland L, Krüger A, Volkmer I, Cynis H, Emmer A, Staege MS. Identification of differentially expressed human endogenous retrovirus families in human Leukemia and Lymphoma cell lines and stem cells. Front Oncol. 2021;11:637981. doi:10.3389/fonc.2021.637981.
   PubMed Web of Science ®Google Scholar
• Gonzalez-Bosquet J, Pedra-Nobre S, Devor EJ, Thiel KW, Goodheart MJ, Bender DP, Leslie KK. Bacterial, Archaea, and viral transcripts (BAVT) expression in gynecological cancers and correlation with regulatory regions of the genome. Cancers (Basel). 2021;13(5):1109. doi:10.3390/cancers13051109.
   PubMed Web of Science ®Google Scholar
• Cai HZ, Zhang H, Yang J, Zeng J, Wang H. Preliminary assessment of viral metagenome from cancer tissue and blood from patients with lung adenocarcinoma. J Med Virol. 2021;93(8):5126–5133. doi:10.1002/jmv.26887.
   PubMed Web of Science ®Google Scholar
• Chiu CY, Miller SA. Clinical metagenomics. Nat Rev Genet. 2019;20(6):341–355. doi:10.1038/s41576-019-0113-7.
   PubMed Web of Science ®Google Scholar
• Kriesel JD, Hobbs MR, Jones BB, Milash B, Nagra RM, Fischer KF, Feng Y. Deep sequencing for the detection of virus-like sequences in the brains of patients with multiple sclerosis: detection of GBV-C in human brain. PLoS One. 2012;7(3):e31886. doi:10.1371/journal.pone.0031886.
   PubMed Web of Science ®Google Scholar
• Freer G, Maggi F, Pifferi M, Di Cicco ME, Peroni DG, Pistello M. The Virome and its major component, Anellovirus, a convoluted system molding human immune defenses and Possibly affecting the development of Asthma and respiratory diseases in childhood. Front Microbiol. 2018;9:686. doi:10.3389/fmicb.2018.00686.
   PubMed Web of Science ®Google Scholar
• Tokita H, Murai S, Kamitsukasa H, Yagura M, Harada H, Takahashi M, Okamoto H. High TT virus load as an independent factor associated with the occurrence of hepatocellular carcinoma among patients with hepatitis C virus-related chronic liver disease. J Med Virol. 2002;67(4):501–509. doi:10.1002/jmv.10129.
   PubMed Web of Science ®Google Scholar
• Bando M, Takahashi M, Ohno S, Hosono T, Hironaka M, Okamoto H, Sugiyama Y. Torque teno virus DNA titre elevated in idiopathic pulmonary fibrosis with primary lung cancer. Respirology. 2008;13(2):263–269. doi:10.1111/j.1440-1843.2007.01217.x.
   PubMed Web of Science ®Google Scholar
• Stefani D, Hegedues B, Collaud S, Zaatar M, Ploenes T, Valdivia D, Elsner C, Bleekmann B, Widera M, Dittmer U, et al. Torque Teno Virus load in lung cancer patients correlates with age but not with tumor stage. PLoS One. 2021;16(6):e0252304. doi:10.1371/journal.pone.0252304.
   PubMed Web of Science ®Google Scholar
• Zhong S, Yeo W, Tang MW, Lin XR, Mo F, Ho WM, Hui P, Johnson PJ. Gross elevation of TT virus genome load in the peripheral blood mononuclear cells of cancer patients. Ann N Y Acad Sci. 2001;945(1):84–92. doi:10.1111/j.1749-6632.2001.tb03868.x.
   PubMedGoogle Scholar
• Görzer I, Jaksch P, Kundi M, Seitz T, Klepetko W, Puchhammer-Stöckl E, Schildgen O. Pre-transplant plasma Torque Teno virus load and increase dynamics after lung transplantation. PLoS One. 2015;10(4):e0122975. doi:10.1371/journal.pone.0122975.
   PubMed Web of Science ®Google Scholar
• Zanella MC, Cordey S, Laubscher F, Docquier M, Vieille G, Van Delden C, Braunersreuther V, Ta MK, Lobrinus JA, Masouridi-Levrat S, et al. Unmasking viral sequences by metagenomic next-generation sequencing in adult human blood samples during steroid-refractory/dependent graft-versus-host disease. Microbiome. 2021;9(1):28. doi:10.1186/s40168-020-00953-3.
   PubMed Web of Science ®Google Scholar
• Lampe E, Saback FL, Viazov S, Roggendorf M, Niel C. Age-specific prevalence and genetic diversity of GBV-C/hepatitis G virus in Brazil. J Med Virol. 1998;56(1):39–43. doi:10.1002/(SICI)1096-9071(199809)56:1<39:AID-JMV7>3.0.CO;2-O.
   PubMed Web of Science ®Google Scholar
• Muerhoff AS, Tillmann HL, Manns MP, Dawson GJ, Desai SM. GB virus C genotype determination in GB virus-C/HIV co-infected individuals. J Med Virol. 2003;70(1):141–149. doi:10.1002/jmv.10375.
   PubMed Web of Science ®Google Scholar
• Jõgeda EL, Huik K, Pauskar M, Kallas E, Karki T, Des Jarlais D, Uusküla A, Lutsar I, Avi R. Prevalence and genotypes of GBV-C and its associations with HIV infection among persons who inject drugs in Eastern Europe. J Med Virol. 2017;89(4):632–638. doi:10.1002/jmv.24683.
   PubMed Web of Science ®Google Scholar
• Silva ASN, Silva CP, Barata RR, da Silva PVR, Monteiro PDJ, Lamarão L, Burbano RMR, Nunes MRT, de Lima PDL. Human pegivirus (HPgV, GBV-C) RNA in volunteer blood donors from a public hemotherapy service in Northern Brazil. Virol J. 2020;17(1):153. doi:10.1186/s12985-020-01427-6.
   PubMed Web of Science ®Google Scholar
• De Vlaminck I, Khush KK, Strehl C, Kohli B, Luikart H, Neff NF, Okamoto J, Snyder T, Cornfield D, Nicolls M, et al. Temporal response of the human virome to immunosuppression and antiviral therapy. Cell. 2013;155(5):1178–11787. doi:10.1016/j.cell.2013.10.034.
   PubMed Web of Science ®Google Scholar
• Blatter JA, Sweet SC, Conrad C, Danziger-Isakov LA, Faro A, Goldfarb SB, Hayes D, Melicoff E, Schecter M, Storch G, et al. Anellovirus loads are associated with outcomes in pediatric lung transplantation. Pediatr Transplant. 2018;22(1):e13069. doi:10.1111/petr.13069.
   Web of Science ®Google Scholar
• Liu X, Chen Y, Wang Y, Dong X, Wang J, Tang J, Sundquist K, Sundquist J, Ji J. Cancer risk in patients with hepatitis C virus infection: a population-based study in Sweden. Cancer Med. 2017;6(5):1135–1140. doi:10.1002/cam4.988.
   PubMed Web of Science ®Google Scholar
• Kamiza AB, Su FH, Wang WC, Sung FC, Chang SN, Yeh CC. Chronic hepatitis infection is associated with extrahepatic cancer development: a nationwide population-based study in Taiwan. BMC Cancer. 2021;16(1):861. doi:10.1186/s12885-016-2918-5.
   Google Scholar
• Oliveira ML, Bastos FI, Sabino RR, Paetzold U, Schreier E, Pauli G, Yoshida CF. Distribution of HCV genotypes among different exposure categories in Brazil. Braz J Med Biol Res. 1999;32(3):279–282. doi:10.1590/S0100-879X1999000300005.
   PubMed Web of Science ®Google Scholar