An integral approach to simulate three-dimensional flow in and around a ventilated U-shaped chironomid dwelled burrow

References

• Aller RC. 1980. Quantifying solute distributions in the bioturbated zone of marine sediments by defining an average microenvironment. Geochim Cosmochim Acta. 44(12):1955–1965.
   Web of Science ®Google Scholar
• Brand A, Lewandowski J, Hamann E, Nützmann G. 2013. Advection around ventilated U-shaped burrows: a model study: advection around ventilated U-shaped burrows. Water Resour Res. 49(5):2907–2917.
   Web of Science ®Google Scholar
• Broecker T, Teuber K, Sobhi Gollo V, Lewandowski J, Nützmann G, Hinkelmann R. 2019a. Quantifying hyporheic exchange fluxes through ripples with an integral flow model. In: 38th IAHR World Cngress, Panama City, FL.
   Google Scholar
• Broecker T, Teuber K, Sobhi GV, Nützmann G, Lewandowski J, Hinkelmann R. 2019b. Integral flow modelling approach for surface water-groundwater interactions along a rippled streambed. Water. 11:1517.
   Web of Science ®Google Scholar
• Cardenas MB, Wilson JL. 2007. Hydrodynamics of coupled flow above and below a sediment-water interface with triangular bed-forms. Adv Water Resour. 30(3):301–313.
   Web of Science ®Google Scholar
• Darwin C. 1881. The formation of vegetable mould through the action of worms with observation of their habits. London: John Murray.
   Google Scholar
• DIN 4220:2008-11. 2008. Pedologic site assessment - designation, classification and deduction of soil parameters (normative and nominal scaling).
   Google Scholar
• Ergun S. 1952. Fluid flow through packed columns. Chem Eng Prog. 48:89–94.
   Web of Science ®Google Scholar
• Furukawa Y, Bentley SJ, Lavoie DL. 2001. Bioirrigation modeling in experimental benthic mesocosms. J Mar Res. 59(3):417–452.
   Web of Science ®Google Scholar
• Hinkelmann R. 2005. Efficient numerical methods and information-processing techniques for modeling hydro- and environmental systems. Berlin Heidelberg: Springer-Verlag GmbH; p. 48.
   Google Scholar
• Hölker F, Vanni MJ, Kuiper JJ, Meile C, Grossart H-P, Stief P, Rita A, Lorke A, Dellwig O, Brand A, Hupfer M, Mooij WM, Nützmann G. 2015. Tube-dwelling invertebrates: tiny ecosystem engineers have large effects in lake ecosystems. Ecol Monogr. 85(3):333–351. P
   Web of Science ®Google Scholar
• Hupfer M, Jordan S, Herzog C, Ebeling C, Ladwig C, Rothe M, Lewandowski J. 2019. Chironomid larvae enhance phosphorus burial in lake sediments: insights from long-term and short-term experiments. Sci Total Environ. 663:254–264.
   PubMed Web of Science ®Google Scholar
• Janssen F, Cardenas MB, Sawyer AH, Dammrich T, Krietsch J, de Beer DA. 2012. Comparative experimental and multiphysics computational fluid dynamics study of coupled surface–subsurface flow in bed forms. Water Resour Res. 48(8): W08514. doi:10.1029/2012WR011982.
   Google Scholar
• Koretsky CM, Meile C, Van Cappellen P. 2002. Quantifying bioirrigation using ecological parameters: a stochastic approach. Geochem Trans. 3(1):17–30. NoPp
   PubMedGoogle Scholar
• Kristensen E, Penha-Lopes G, Delefosse M, Valdemarsen T, Quintana CO, Banta GT. 2012. What is bioturbation? The need for a precise definition for fauna in aquatic sciences. Mar Ecol Prog Ser. 446:285–302.
   Web of Science ®Google Scholar
• Laskov C, Herzog C, Lewandowski J, Hupfer M. 2007. Miniaturised photometrical methods for the rapid analysis of phosphate, ammonium, ferrous iron and sulfate in pore water of aquatic sediments. Limnol Oceanogr Methods. 5(1):63–71.
   Google Scholar
• Lewandowski J, Hupfer M. 2005a. Effect of macrozoobenthos on two-dimensional small-scale heterogeneity of pore water phosphorus concentrations in lake sediments: a laboratory study. Limnol Oceanogr. 50(4):1106–1118.
   Web of Science ®Google Scholar
• Lewandowski J, Hupfer M. 2005b. Effect of chironomus plumosus on spatial distribution of porewater phosphate concentration in lake sediments: a laboratory experiment. Verh Internat Verein Theoret Angew Limnol. 29(2):937–940.
   Google Scholar
• Lewandowski J, Laskov C, Hupfer M. 2007. The relationship between chironomus plumosus burrows and the spatial distribution of pore-water phosphate, iron and ammonium in lake sediments. Freshwater Biol. 52(2):331–343.
   Web of Science ®Google Scholar
• Lewandowski J, Rüter K, Hupfer M. 2002. Two-dimensional small-scale variability of pore water phosphate in freshwater lakes: results from a novel dialysis sampler. Environ Sci Technol. 36:2039–2047.
   PubMed Web of Science ®Google Scholar
• Lewandowski J, Schadach M, Hupfer M. 2005. Impact of macrozoobenthos on two-dimensional small-scale heterogeneity of pore water phosphorus concentrations: in-situ study in Lake Arendsee (Germany). Hydrobiologia. 549(1):43–55.
   Google Scholar
• Meile C, Berg P, Van Cappellen P, Tuncay K. 2005. Solute-specific pore water irrigation: implications for chemical cycling in early diagenesis. J Mar Res. 63(3):601–621.
   Web of Science ®Google Scholar
• Meysman FJR, Galaktionov OS, Gribsholt B, Middelburg JJ. 2006. Bioirrigation in permeable sediments; advective pore-water transport induced by burrow ventilation. Limnol Oceanogr. 51(1):142–156. Pp
   Web of Science ®Google Scholar
• Morad MR, Khalili A, Roskosch A, Lewandowski J. 2010. Quantification of pumping rate of chironomus plumosus larvae in natural burrows. Aquat Ecol. 44(1):143–153.
   Web of Science ®Google Scholar
• Oxtoby OF, Heyns JA, Suliman R. 2013. A finite-volume solver for two-fluid flow in heterogeneous porous media based on OpenFOAM. In: Open Source CFD International Conference, Hamburg.
   Google Scholar
• Reynolds O. 1883. XXIX. An experimental investigation of the circumstances which determine whether the motion of water shall be direct or sinuous, and of the law of resistance in parallel channels. Philos Trans R Soc London. 174:935–982.
   Google Scholar
• Rodrigues MA, Padrela L, Geraldes V, Santos J, Matos HA, Azevedo EG. 2011. Theophylline polymorphs by atomization of supercritical antisolvent induced suspensions. J Supercrit Fluids. 58(2):303–312.
   Web of Science ®Google Scholar
• Roskosch A, Hette N, Hupfer M, Lewandowski J. 2012. Alteration of chironomus plumosus ventilation activity and bioirrigation-mediated benthic fluxes by changes in temperature, oxygen concentration, and seasonal variations. Freshwater Sci. 31(2):269–281.
   Web of Science ®Google Scholar
• Roskosch A, Hupfer M, Nützmann G, Lewandowski J. 2011. Measurement techniques for quantification of pumping activity of invertebrates in small burrows. Fundam Appl limnol. 178(2):89–110.
   Web of Science ®Google Scholar
• Roskosch A, Morad MR, Khalili A, Lewandowski J. 2010. Bioirrigation by chironomus plumosus: advective flow investigated by particle image velocimetry. J N Am Benthol Soc. 29(3):789–802.
   Google Scholar
• Schulze L, Thorenz C. 2014. The multiphase capabilities of the CFD toolbox openfoam for hydraulic engineering applications. In: ICHE 2014. Proceedings of the 11th International Conference on Hydroscience & Engineering. Bundesanstalt für Wasserbau: Hamburg.
   Google Scholar
• Stief P, Polerecky L, Poulsen M, Schramm A. 2010. Control of nitrous oxide emission from chironomus plumosus larvae by nitrate and temperature. Limnol Oceanogr. 55(2):872–884.
   Web of Science ®Google Scholar
• Tonina D, Buffington JM. 2009. A three-dimensional model for analyzing the effects of salmon redds on hyporheic exchange and egg pocket habitat. Can J Fish Aquat Sci. 66(12):2157–2173.
   Web of Science ®Google Scholar
• Van Gent M. 1995. Wave interaction with permeable coastal structures. Vol. 95. Amsterdam, The Netherlands: Elsevier Science.
   Google Scholar