Remote sensing framework details riverscape connectivity fragmentation and fish passability in a forested landscape

References

• Amiro PG. 1983. Aerial photographic measurement of Atlantic Salmon habitat of the Miramichi River. New Brunswick. 83:31.
   Google Scholar
• Anderson GB, Freeman MC, Freeman BJ, Straight CA, Hagler MM, Peterson JT. 2012. Dealing with uncertainty when assessing fish passage through culvert road crossings. Environ Manage. 50(3):462–477.
   PubMed Web of Science ®Google Scholar
• Blakely TJ, Harding JS, Mcintosh AR, Winterbourn MJ. 2006. Barriers to the recovery of aquatic insect communities in urban streams. Freshwater Biol. 51(9):1634–1645.
   Web of Science ®Google Scholar
• Bourne CM, Kehler DG, Wiersma YF, Cote D. 2011. Barriers to fish passage and barriers to fish passage assessments: The impact of assessment methods and assumptions on barrier identification and quantification of watershed connectivity. Aquat Ecol. 45(3):389–403.
   Web of Science ®Google Scholar
• Bouska WW, Paukert CP. 2010. Road crossing designs and their impact on fish assemblages of Great Plains Streams. Trans Am Fish Soc . 139(1):214–222.
   Web of Science ®Google Scholar
• Bowen MD, Marques S, Silva LGM, Vono V, Godinho HP. 2006. Comparing on site human and video counts at Igarapava fish ladder, south eastern Brazil. Neotrop Ichthyol. 4(2):291–294.
   Web of Science ®Google Scholar
• Burford DD, McMahon TE, Cahoon JE, Blank M. 2009. Assessment of trout passage through culverts in a large Montana drainage during summer low flow. North Am J Fish Manage . 29(3):739–752.
   Web of Science ®Google Scholar
• Chilibeck, B. (Ed.). 1992. Land development guidelines for the protection of aquatic habitat. Ministry of Environment, Lands, and Parks, Victoria, BC.
   Google Scholar
• Clay CH. 1995. Design of fishways and other fish facilities. Lewis Publishers. Ann Arbor, MI. 2nd edition.
   Google Scholar
• Correa Ayram CA, Mendoza ME, Etter A, Salicrup DRP. 2016. Habitat connectivity in biodiversity conservation: A review of recent studies and applications. Prog Phys Geogr: Earth Environ. 40 (1):7–37.
   Google Scholar
• Cote D, Kehler DG, Bourne C, Wiersma YF. 2009. A new measure of longitudinal connectivity for stream networks. Landscape Ecol. 24(1):101–113.
   Web of Science ®Google Scholar
• Daigle A, Jeong DI, Lapointe MF. 2015. Climate change and resilience of tributary thermal refugia for salmonids in eastern Canadian rivers. Hydrol Sci J. 60 (6):1044–1063.
   Web of Science ®Google Scholar
• Diebel M. 2014. A screening method for identifying fish passage barriers at road crossings using LiDAR-derived elevation data. International Conference on Engineering and Ecohydrology for Fish Passage: 50. University of Massachusetts Amherst, USA, June 10, 2014.
   Google Scholar
• Diebel M, Fedora M, Cogswell S. 2010. Prioritizing road crossing improvement to restore stream connectivity for stream-resident fish. Proceedings of the 2009 International Conference on Ecology and Transportation. Center for Transportation and the Environment, North Carolina State University, Raleigh, NC.
   Google Scholar
• Doehring K, Young RG, McIntosh AR. 2011. Factors affecting juvenile galaxiid fish passage at culverts. Mar Freshwater Res. 62(1):38–45.
   Web of Science ®Google Scholar
• Erkinaro J, Erkinaro H, Niemelä E. 2017. Road culvert restoration expands the habitat connectivity and production area of juvenile Atlantic salmon in a large subarctic river system. Fish Manag Ecol. 24(1):73–81.
   Web of Science ®Google Scholar
• ESRI. 2018. GIS Mapping Software, Spatial Data Analytics & Location Platform. Available from https://www.esri.com/en-us/home [accessed 12 August 2018].
   Google Scholar
• Fahrig L. 2003. Effects of habitat fragmentation on biodiversity. Annu Rev Ecol Evol Syst. 34(1):487–515.
   Web of Science ®Google Scholar
• French WE, Vondracek B, Ferrington LC, Finlay JC, Dieterman DJ. 2017. Brown trout (Salmo trutta) growth and condition along a winter thermal gradient in temperate streams. Can J Fish Aquat Sci. 74 (1):56–64.
   Web of Science ®Google Scholar
• Frissel CA, Liss WJ, Warren CE, Hurley MD. 1986. A hierarchical framework for stream habitat classification: Viewing streams in a watershed context. Environ Manage. 10(2):199–214.
   Web of Science ®Google Scholar
• Fullerton AH, Burnett KM, Steel EA, Flitcroft RL, Pess GR, Feist BE, Torgersen CE, Miller DJ, Sanderson BL. 2010. Hydrological connectivity for riverine fish: measurement challenges and research opportunities. Freshwater Biol. 55(11):2215–2237.
   Web of Science ®Google Scholar
• Fyffe LR, Richard DM. 2007. Lithological map of New Brunswick. New Brunswick Department of natural resources. N.B., Canada: Minerals, Policy and Planning Division, Fredericton. Plates 2007–2018.
   Google Scholar
• Gautreau MD. 2017. Evaluating fish passage through retrofitted culverts using radio frequency identification (RFID). MSc [Thesis]. University of New Brunswick.
   Google Scholar
• Gibson RJ, Haedrich RL, Wernerheim CM. 2005. Loss of fish habitat as a consequence of inappropriately constructed stream crossings. Fisheries. 1:10–17.2.0.CO;2]
   Google Scholar
• Goerig E, Castro-Santos T, Bergeron NE. 2016. Brook trout passage performance through culverts. Can J Fish Aquat Sci. 73(1):94–104.
   Web of Science ®Google Scholar
• Hall CJ, Jordaan A, Frisk MG. 2011. The historic influence of dams on diadromous fish habitat with a focus on river herring and hydrologic longitudinal connectivity. Landscape Ecol. 26(1):95–107.
   Web of Science ®Google Scholar
• Hayashi M, van der Kamp G, Schmidt R. 2003. Focused infiltration of snowmelt water in partially frozen soil under small depressions. J Hydrol. 270(3–4):214–229.
   Web of Science ®Google Scholar
• Hitt NP, Angermeier PL. 2008. River-stream connectivity affects fish bioassessment performance. Environ Manage. 42(1):132–150.
   PubMed Web of Science ®Google Scholar
• Huttunen KL, Mykra HJ, Oksanen A, Astorga R, Paavola T, Muotka. 2017. Habitat connectivity and in-stream vegetation control temporal variability of benthic invertebrate communities. Sci Rep. 7, 1448.
   PubMed Web of Science ®Google Scholar
• Jackson FL, Hannah DM, Fryer RJ, Millar CP, Malcolm IA. 2017. Development of spatial regression models for predicting summer river temperatures from landscape characteristics: implications for land and fisheries management. Hydrol Process. 31 (6):1225–1238.
   Web of Science ®Google Scholar
• Jackson, S. 2013. Optimized pit removal V1.5.1 Tutorial. Center for Research in Water Resources University of Texas at Austin. Available online at http://tools.crwr.utexas.edu/OptimizedPitRemoval/CRWR%20Tools%20Optimized%20Pit%20Removal.html.
   Google Scholar
• Januchowski-Hartley SR, Diebel M, Doran PJ, McIntyre PB. 2014. Predicting road culvert passability for migratory fishes. Divers Distrib. 20(12):1414–1424.
   Web of Science ®Google Scholar
• Keller TA, Snyder EB, Feminella JW. 2011. Mechanisms and potential implications of fragmentation in low-order streams. J North Am Benthol Soc. 30 (4):1093–1094.
   Google Scholar
• Kemp PS, O'Hanley JR. 2010. Procedures for evaluating and prioritizing the removal of fish passage barriers: A synthesis. Fish Manag Ecol. 17:no–322.
   Web of Science ®Google Scholar
• Khan B, Colbo MH. 2008. The impact of physical disturbance on stream communities: lessons from road culverts. Hydrobiologia. 600(1):229–235.
   Google Scholar
• Khodier MA, Tullis BP. 2018. Experimental and computational comparison of baffled-culvert hydrodynamics for fish passage. J Appl Water Eng Res. 6(3):191–199.
   Web of Science ®Google Scholar
• Kraft M, Rosenberg DE, Null SE. 2019. Prioritizing stream barrier removal to maximize connected aquatic habitat and minimize water scarcity. J Am Water Resour Assoc. 55(2):382–400.
   Web of Science ®Google Scholar
• Lindsay JB, Dhun K. 2015. Modelling surface drainage patterns in altered landscapes using LiDAR. Int J Geograph Inf Sci. 29(3):397–411.
   Web of Science ®Google Scholar
• Love M, Taylor RN. 2003. Fish passage evaluation at stream crossings. California Salmonid Stream Habitat Restoration Manual Part IX.
   Google Scholar
• MacPherson LM, Sullivan MG, Foote AL, Stevens CE. 2012. Effects of culverts on stream fish assemblages in the Alberta foothills. North Am J Fish Manage. 32(3):480–490.
   Web of Science ®Google Scholar
• Mahlum S, Cote D, Wiersma YF, Kehler D, Clarke KD. 2014. Evaluating the barrier assessment technique derived from FishXing software and the upstream movement of Brook Trout through road culverts. Trans Am Fish Soc. 143(1):39–48.
   Web of Science ®Google Scholar
• Makrakis S, Castro-Santos T, Makrakis MC, Wagner RL, Adames MS. 2012. Culverts in paved roads as suitable passages for Neotropical fish species. Neotrop Ichthyol. 10(4):763–770.
   Web of Science ®Google Scholar
• New Brunswick Department of Environment (NBDE). 2012. Watercourse and wetland alteration technical guidelines. Sustainable Development, Planning and Impact Evaluation Branch.
   Google Scholar
• Nislow KH, Hudy M, Letcher BH, Smith EP. 2011. Variation in local abundance and species richness of stream fishes in relation to dispersal barriers: implications for management and conservation. Freshwater Biol. 56(10):2135–2144.
   Web of Science ®Google Scholar
• O’Sullivan AM, Wegscheider B, Helminen J, Cormier JG, Linnansaari T, Wilson DA, Curry RA. 2021. Catchment-scale, high resolution, hydraulic models and habitat maps – a salmonid’s perspective. J Ecohydraul. 6(1):53–68.
   Google Scholar
• O'Callaghan JF, Mark DM. 1984. The extraction of drainage networks from digital elevation data. Comput Vis Graph Image Process. 28(3):323–344.
   Google Scholar
• Ogren SA, Huckins CJ. 2015. Culvert replacements: improvement of stream biotic integrity? Restor Ecol. 23(6):821–828.
   Web of Science ®Google Scholar
• Olsen AH, Tullis BP. 2013. Laboratory study of fish passage and discharge capacity in slip-lined, baffled culverts. J Hydraul Eng. 139(4):424–432.
   Web of Science ®Google Scholar
• O'Sullivan AM, Linnansaari T, Curry RA. 2019. Ice cover exists: A quick method to delineate groundwater inputs in running waters for cold and temperate regions. Hydrol Processes. 33(26):3297–3309.
   Web of Science ®Google Scholar
• Park D, Sullivan M, Bayne E, Scrimgeour G. 2008. Landscape-level stream fragmentation caused by hanging culverts along roads in Alberta’s boreal forest. Can J for Res. 38(3):566–575.
   Web of Science ®Google Scholar
• Peake SJ. 2008. Behavior and passage performance of northern pike, walleyes, and white suckers in an experimental raceway. North Am J Fish Manage. 28(1):321–327.
   Web of Science ®Google Scholar
• Poplar-Jeffers IO, Petty JT, Anderson JT, Kite SJ, Strager MP, Fortney RH. 2009. Culvert replacement and stream habitat restoration: implications from Brook trout management in an Appalachian Watershed, U.S.A. Restor Ecol. 17(3):404–413.
   Web of Science ®Google Scholar
• Praskievicz S, Buege E. 2017. Remote-sensing hydraulic characterization of channel habitat units in a tropical montane river: Bladen River, Belize. Remote Sens. 9(12):1295.
   Google Scholar
• Price DM, Quinn T, Barnard RJ. 2010. Fish passage effectiveness of recently constructed road crossing culverts in the Puget Sound region of Washington State. North Am J Fish Manage. 30(5):1110–1125.
   Web of Science ®Google Scholar
• Rampton VN, Gauthier RC, Thibault J, Seaman A. 1984. Quaternary geology of New Brunswick. In Memoir 416. New Brunswick, Canada: Geological Survey of Canada.
   Google Scholar
• Rayamajhi B, Vasconcelos JG, Devkota JP, Baral D, Tritico HM. 2012. Should fish passage through culverts be a concern for midwest engineers and planners? determining the percentage of culverts that act as barriers to fish passage in NE Ohio. World Environmental and Water Resources Congress, 2012: Crossing Boundaries.
   Google Scholar
• Restigouche River Watershed Management Council (RRWMC). 2015. Assessments of the Main Restigouche and Upsalquitch Rivers. http://restigouche.org/. [accessed 2018 August 30]
   Google Scholar
• Service New Brunswick (SNB). 2016–2018. GeoNB. http://www.snb.ca/geonb1/e/index-E.asp. [accessed 2018 July 18]
   Google Scholar
• Tarboton DG. 2015. Terrain analysis using digital elevation models (TauDEM). USA: Utah State University
   Google Scholar
• Taylor RN. 2000. Humboldt County culvert inventory and fish passage evaluation. McKinleyville (CA): Final report to California Department of Fish and Game, Contract FG-7068 IF, Ross Taylor and Associates.
   Google Scholar
• Technidea. 2012. Zip level pro-2000 user guide. Escondido, CA, USA. http://www.ziplevel.com/i/3128ZIPLEVELcompactuserguide-English2012-RevA-singlepages.PDF. [accessed 2018 July 25]
   Google Scholar
• Torterotot JB, Perrier C, Bergeron NE, Bernatchez L. 2014. Influence of forest road culverts and waterfalls on the fine-scale distribution of Brook trout genetic diversity in a boreal watershed. Trans Am Fish Soc. 143(6):1577–1591.
   Web of Science ®Google Scholar
• Trombulak SC, Frissell CA. 2000. Review of ecological effects of roads on terrestrial and aquatic communities. Conserv Biol. 14(1):18–30.
   Web of Science ®Google Scholar
• Wall J, Doctor D, Terziotti S. 2015. A semi-automated tool for reducing the creation of false closed depressions from a filled LIDAR-derived digital elevation model. National Cave and Karst Research Institute Symposium, Vol. 5, p. 255–262.
   Google Scholar
• Ward JV, Stanford JA. 1995. Ecological connectivity in alluvial river ecosystems and its disruption by flow regulation. Regul Rivers Res Mgmt. 11(1):105–119.
   Google Scholar
• Warren ML, Pardew MG. 1998. Road crossings as barriers to small-stream fish movement. Trans Am Fish Soc. 127(4):637–644.
   Web of Science ®Google Scholar
• Wilbur NM, O'Sullivan AM, MacQuarrie KTB, Linnansaari T, Curry RA. 2020. Characterizing physical habitat preferences and thermal refuge occupancy of brook trout (Salvelinus fontinalis) and Atlantic salmon (Salmo salar) at high river temperatures. River Res Appl. 36 (5):769–783.
   Web of Science ®Google Scholar
• Wilson J, Gallant J. 2000. Terrain analysis: principles and applications. 1st ed. Chichester, New York: Wiley.
   Google Scholar
• Winter TC. 1999. Relation of streams, lakes, and wetlands to groundwater flow systems. Hydrogeol J. 7(1):28–45.
   Web of Science ®Google Scholar
• Wondzell SM, Gooseff MN. 2013. Geomorphic controls on hyporheic exchange across scales – Watersheds to particles. Treat Geomorphol. 9:203–218.
   Google Scholar
• Zahra T, Paudel U, Hayakawa YS, Oguchi T. 2017. Knickzone extraction tool (KET) – A new ArcGIS toolset for automatic extraction of knickzones from a DEM based on multi-scale stream gradients. Open Geosci. 9(1):73–88.
   Web of Science ®Google Scholar