Association Between the Diabetic Foot Ulcer and the Bacterial Colony of the Skin Based on 16S rRNA Gene Sequencing: An Observational Study

References

• Zayed H. Genetic epidemiology of type 1 diabetes in the 22 Arab countries. Curr Diab Rep. 2016;16(5):37. doi:10.1007/s11892-016-0736-4
   PubMed Web of Science ®Google Scholar
• International Diabetes Federation. IDF Diabetes Atlas. 10th ed. International Diabetes Federation; 2021. Available from: www.diabetesatlas.org. Accessed September 6, 2022.
   Google Scholar
• Grennan D. Diabetic foot ulcers. JAMA. 2019;321(1):114. doi:10.1001/jama.2018.18323
   PubMedGoogle Scholar
• Bus SA, Lavery LA, Monteiro-Soares M, et al. Guidelines on the prevention of foot ulcers in persons with diabetes (IWGDF 2019 update). Diabetes Metab Res Rev. 2020;36(Suppl 1):e3269. doi:10.1002/dmrr.3269
   PubMed Web of Science ®Google Scholar
• Armstrong DG, Boulton AJM, Bus SA. Diabetic foot ulcers and their recurrence. N Engl J Med. 2017;376(24):2367–2375. doi:10.1056/NEJMra1615439
   PubMed Web of Science ®Google Scholar
• Walsh JW, Hoffstad OJ, Sullivan MO, Margolis DJ. Association of diabetic foot ulcer and death in a population-based cohort from the United Kingdom. Diabet Med. 2016;33(11):1493–1498. doi:10.1111/dme.13054
   PubMed Web of Science ®Google Scholar
• Baig MS, Banu A, Zehravi M, et al. An overview of diabetic foot ulcers and associated problems with special emphasis on treatments with antimicrobials. Life. 2022;12(7):1054.
   PubMedGoogle Scholar
• Edmonds M, Lazaro-Martinez JL, Alfayate-Garcia JM, et al. Sucrose octasulfate dressing versus control dressing in patients with neuroischaemic diabetic foot ulcers (Explorer): an international, multicentre, double-blind, randomised, controlled trial. Lancet Diabetes Endocrinol. 2018;6(3):186–196. doi:10.1016/S2213-8587(17)30438-2
   PubMed Web of Science ®Google Scholar
• Xu Z, Hsia HC. The impact of microbial communities on wound healing: a review. Ann Plast Surg. 2018;81(1):113–123. doi:10.1097/SAP.0000000000001450
   PubMed Web of Science ®Google Scholar
• Luqman A, Gotz F. The ambivalent role of skin microbiota and adrenaline in wound healing and the interplay between them. Int J Mol Sci. 2021;22(9):4996. doi:10.3390/ijms22094996
   PubMed Web of Science ®Google Scholar
• Tomic-Canic M, Burgess JL, O’Neill KE, Strbo N, Pastar I. Skin microbiota and its interplay with wound healing. Am J Clin Dermatol. 2020;21(Suppl 1):36–43. doi:10.1007/s40257-020-00536-w
   PubMed Web of Science ®Google Scholar
• Grice EA, Snitkin ES, Yockey LJ, et al. Longitudinal shift in diabetic wound microbiota correlates with prolonged skin defense response. Proc Natl Acad Sci U S A. 2010;107(33):14799–14804. doi:10.1073/pnas.1004204107
   PubMed Web of Science ®Google Scholar
• Gardner SE, Hillis SL, Heilmann K, Segre JA, Grice EA. The neuropathic diabetic foot ulcer microbiome is associated with clinical factors. Diabetes. 2013;62(3):923–930. doi:10.2337/db12-0771
   PubMed Web of Science ®Google Scholar
• Oates A, Bowling FL, Boulton AJ, McBain AJ. Molecular and culture-based assessment of the microbial diversity of diabetic chronic foot wounds and contralateral skin sites. J Clin Microbiol. 2012;50(7):2263–2271. doi:10.1128/JCM.06599-11
   PubMed Web of Science ®Google Scholar
• American Diabetes Association. Diagnosis and classification of diabetes mellitus. Diabetes Care. 2011;34(Suppl 1):S62–S69. doi:10.2337/dc11-S062
   PubMed Web of Science ®Google Scholar
• Jnana A, Muthuraman V, Varghese VK, et al. Microbial community distribution and core microbiome in successive wound grades of individuals with diabetic foot ulcers. Appl Environ Microbiol. 2020;86(6). doi:10.1128/AEM.02608-19
   PubMed Web of Science ®Google Scholar
• Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–336. doi:10.1038/nmeth.f.303
   PubMed Web of Science ®Google Scholar
• Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460–2461. doi:10.1093/bioinformatics/btq461
   PubMed Web of Science ®Google Scholar
• Bokulich NA, Subramanian S, Faith JJ, et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods. 2013;10(1):57–59. doi:10.1038/nmeth.2276
   PubMed Web of Science ®Google Scholar
• Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007;73(16):5261–5267. doi:10.1128/AEM.00062-07
   PubMed Web of Science ®Google Scholar
• Pitocco D, Spanu T, Di Leo M, et al. Diabetic foot infections: a comprehensive overview. Eur Rev Med Pharmacol Sci. 2019;23(2 Suppl):26–37. doi:10.26355/eurrev_201904_17471
   PubMedGoogle Scholar
• Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R. Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res. 2007;35(18):e120. doi:10.1093/nar/gkm541
   PubMed Web of Science ®Google Scholar
• Macdonald KE, Boeckh S, Stacey HJ, Jones JD. The microbiology of diabetic foot infections: a meta-analysis. BMC Infect Dis. 2021;21(1):770. doi:10.1186/s12879-021-06516-7
   PubMed Web of Science ®Google Scholar
• Demetriou M, Papanas N, Panagopoulos P, Panopoulou M, Maltezos E. Atypical microbial isolates from infected diabetic foot ulcers: a case series from Greece. Rev Diabet Stud. 2017;14(2–3):258–259. doi:10.1900/RDS.2017.14.258
   PubMedGoogle Scholar
• Shanmugam P, J M, Susan SL. The bacteriology of diabetic foot ulcers, with a special reference to multidrug resistant strains. J Clin Diagn Res. 2013;7(3):441–445. doi:10.7860/JCDR/2013/5091.2794
   PubMedGoogle Scholar
• Schloss PD, Westcott SL, Ryabin T, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75(23):7537–7541. doi:10.1128/AEM.01541-09
   PubMed Web of Science ®Google Scholar
• Marathe A, Priyadarsanan DR, Krishnaswamy J, Shanker K. Gamma diversity and under-sampling together generate patterns in beta-diversity. Sci Rep. 2021;11(1):21420. doi:10.1038/s41598-021-99830-8
   PubMed Web of Science ®Google Scholar
• Canesso MC, Vieira AT, Castro TB, et al. Skin wound healing is accelerated and scarless in the absence of commensal microbiota. J Immunol. 2014;193(10):5171–5180. doi:10.4049/jimmunol.1400625
   PubMed Web of Science ®Google Scholar
• Trostrup H, Lerche CJ, Christophersen LJ, et al. Chronic Pseudomonas aeruginosa biofilm infection impairs murine S100A8/A9 and neutrophil effector cytokines-implications for delayed wound closure? Pathog Dis. 2017;75(7). doi:10.1093/femspd/ftx068
   Web of Science ®Google Scholar
• Trostrup H, Lerche CJ, Christophersen LJ, et al. Pseudomonas aeruginosa biofilm hampers murine central wound healing by suppression of vascular epithelial growth factor. Int Wound J. 2018;15(1):123–132. doi:10.1111/iwj.12846
   PubMed Web of Science ®Google Scholar
• Roy S, Santra S, Das A, et al. Staphylococcus aureus biofilm infection compromises wound healing by causing deficiencies in granulation tissue collagen. Ann Surg. 2020;271(6):1174–1185. doi:10.1097/SLA.0000000000003053
   PubMed Web of Science ®Google Scholar
• Uhre ML, Gotland N, Sandholdt H, et al. Increased risk of diabetes mellitus five years after an episode of Staphylococcus aureus bacteraemia. Infect Dis. 2019;51(7):512–518. doi:10.1080/23744235.2019.1602284
   PubMed Web of Science ®Google Scholar
• Mirani ZA, Fatima A, Urooj S, Aziz M, Khan MN, Abbas T. Relationship of cell surface hydrophobicity with biofilm formation and growth rate: a study on Pseudomonas aeruginosa, Staphylococcus aureus, and Escherichia coli. Iran J Basic Med Sci. 2018;21(7):760–769. doi:10.22038/IJBMS.2018.28525.6917
   PubMed Web of Science ®Google Scholar
• Kurup R, Ansari AA. A study to identify bacteriological profile and other risk factors among diabetic and non-diabetic foot ulcer patients in a Guyanese hospital setting. Diabetes Metab Syndr. 2019;13(3):1871–1876. doi:10.1016/j.dsx.2019.04.024
   PubMed Web of Science ®Google Scholar