Diagnostic Performance of Metagenomic Next⁃Generation Sequencing in the Diagnosis of Prosthetic Joint Infection Using Tissue Specimens

References

• Peersman G, Laskin R, Davis J, Peterson M. Infection in total knee replacement: a retrospective review of 6489 total knee replacements. Clin Orthop Relat Res. 2001;392:15–23. doi:10.1097/00003086-200111000-00003
   Web of Science ®Google Scholar
• Meehan J, Jamali AA, Nguyen H. Prophylactic antibiotics in hip and knee arthroplasty. J Bone Joint Surg Am. 2009;91(10):2480–2490. doi:10.2106/JBJS.H.01219
   PubMed Web of Science ®Google Scholar
• Blom AW, Brown J, Taylor AH, Pattison G, Whitehouse S, Bannister GC. Infection after total knee arthroplasty. J Bone Joint Surg Br. 2004;86(5):688–691. doi:10.1302/0301-620x.86b5.14887
   PubMedGoogle Scholar
• Laffer RR, Graber P, Ochsner PE, Zimmerli W. Outcome of prosthetic knee-associated infection: evaluation of 40 consecutive episodes at a single centre. Clin Microbiol Infect. 2006;12(5):433–439. doi:10.1111/j.1469-0691.2006.01378.x
   PubMed Web of Science ®Google Scholar
• Kurtz S, Ong K, Lau E, Mowat F, Halpern M. Projections of primary and revision hip and knee arthroplasty in the United States from 2005 to 2030. J Bone Joint Surg Am. 2007;89(4):780–785. doi:10.2106/JBJS.F.00222
   PubMed Web of Science ®Google Scholar
• Kurtz SM, Lau E, Watson H, Schmier JK, Parvizi J. Economic burden of periprosthetic joint infection in the United States. J Arthroplasty. 2012;27(8Suppl):61–5.e1. doi:10.1016/j.arth.2012.02.022
   PubMedGoogle Scholar
• Kurtz SM, Ong KL, Lau E, Bozic KJ. Impact of the economic downturn on total joint replacement demand in the United States: updated projections to 2021. J Bone Joint Surg Am. 2014;96(8):624–630. doi:10.2106/JBJS.M.00285
   PubMedGoogle Scholar
• Benito N, Franco M, Ribera A, et al. Time trends in the aetiology of prosthetic joint infections: a multicentre cohort study. Clin Microbiol Infect. 2016;22(8):732.e1–732.e7328. doi:10.1016/j.cmi.2016.05.004
   PubMed Web of Science ®Google Scholar
• Gbejuade HO, Lovering AM, Webb JC. The role of microbial biofilms in prosthetic joint infections. Acta Orthop. 2015;86(2):147–158. doi:10.3109/17453674.2014.966290
   PubMed Web of Science ®Google Scholar
• Gatti G, Taddei F, Brandolini M, et al. Molecular approach for the laboratory diagnosis of periprosthetic joint infections. Microorganisms. 2022;10(8):1573. doi:10.3390/microorganisms10081573
   PubMed Web of Science ®Google Scholar
• Yoon HK, Cho SH, Lee DY, et al. A review of the literature on culture-negative periprosthetic joint infection: epidemiology, diagnosis and treatment. Knee Surg Relat Res. 2017;29(3):155–164. doi:10.5792/ksrr.16.034
   PubMedGoogle Scholar
• Corvec S, Portillo ME, Pasticci BM, Borens O, Trampuz A. Epidemiology and new developments in the diagnosis of prosthetic joint infection. Int J Artif Organs. 2012;35(10):923–934. doi:10.5301/ijao.5000168
   PubMed Web of Science ®Google Scholar
• Van Diek FM, Albers CGM, Van Hooff ML, Meis JF, Goosen JHM. Low sensitivity of implant sonication when screening for infection in revision surgery. Acta Orthop. 2017;88(3):294–299. doi:10.1080/17453674.2017.1300021
   PubMed Web of Science ®Google Scholar
• Woo PC, Lau SK, Teng JL, Tse H, Yuen KY. Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories. Clin Microbiol Infect. 2008;14(10):908–934. doi:10.1111/j.1469-0691.2008.02070.x
   PubMed Web of Science ®Google Scholar
• Wang CX, Huang Z, Fang X, Li W, Yang B, Zhang W. Comparison of broad-range polymerase chain reaction and metagenomic next-generation sequencing for the diagnosis of prosthetic joint infection. Int J Infect Dis. 2020;95:8–12. doi:10.1016/j.ijid.2020.03.055
   PubMed Web of Science ®Google Scholar
• Higgins E, Suh GA, Tande AJ, Humphries RM. Enhancing diagnostics in orthopedic infections. J Clin Microbiol. 2022;60(6):e0219621. doi:10.1128/jcm.02196-21
   PubMed Web of Science ®Google Scholar
• Ivy MI, Thoendel MJ, Jeraldo PR, et al. Direct detection and identification of prosthetic joint infection pathogens in synovial fluid by metagenomic shotgun sequencing. J Clin Microbiol. 2018;56(9):e00402–e00418. doi:10.1128/JCM.00402-18
   PubMed Web of Science ®Google Scholar
• Indelli PF, Ghirardelli S, Violante B, Amanatullah DF. Next generation sequencing for pathogen detection in periprosthetic joint infections. EFORT Open Rev. 2021;6(4):236–244. doi:10.1302/2058-5241.6.200099
   PubMed Web of Science ®Google Scholar
• Cai Y, Fang X, Chen Y, et al. Metagenomic next generation sequencing improves diagnosis of prosthetic joint infection by detecting the presence of bacteria in periprosthetic tissues. Int J Infect Dis. 2020;96:573–578. doi:10.1016/j.ijid.2020.05.125
   PubMed Web of Science ®Google Scholar
• Kwon M, Seo SS, Kim MK, Lee DO, Lim MC. Compositional and functional differences between microbiota and cervical carcinogenesis as identified by shotgun metagenomic sequencing. Cancers. 2019;11(3):309. doi:10.3390/cancers11030309
   PubMed Web of Science ®Google Scholar
• Wilson MR, Sample HA, Zorn KC, et al. Clinical metagenomic sequencing for diagnosis of meningitis and encephalitis. N Engl J Med. 2019;380(24):2327–2340. doi:10.1056/NEJMoa1803396
   PubMed Web of Science ®Google Scholar
• Zhang C, Fang X, Huang Z, et al. Value of mNGS in sonication fluid for the diagnosis of periprosthetic joint infection. Arthroplasty. 2019;1(1):9. doi:10.1186/s42836-019-0006-4
   PubMedGoogle Scholar
• Fang X, Cai Y, Shi T, et al. Detecting the presence of bacteria in low-volume preoperative aspirated synovial fluid by metagenomic next-generation sequencing. Int J Infect Dis. 2020;99:108–116. doi:10.1016/j.ijid.2020.07.039
   PubMed Web of Science ®Google Scholar
• Gu W, Miller S, Chiu CY. Clinical metagenomic next-generation sequencing for pathogen detection. Annu Rev Pathol. 2019;14(1):319–338. doi:10.1146/annurev-pathmechdis-012418-012751
   PubMed Web of Science ®Google Scholar
• Parvizi J, Zmistowski B, Berbari EF, et al. New definition for periprosthetic joint infection: from the workgroup of the musculoskeletal infection society. Clin Orthop Relat Res. 2011;469(11):2992–2994. doi:10.1007/s11999-011-2102-9
   PubMed Web of Science ®Google Scholar
• Street TL, Sanderson ND, Atkins BL, et al. Molecular diagnosis of orthopedic-device-related infection directly from sonication fluid by metagenomic sequencing. J Clin Microbiol. 2017;55(8):2334–2347. doi:10.1128/JCM.00462-17
   PubMed Web of Science ®Google Scholar
• Huang Z, Li W, Lee GC, et al. Metagenomic next-generation sequencing of synovial fluid demonstrates high accuracy in prosthetic joint infection diagnostics: mNGS for diagnosing PJI. Bone Joint Res. 2020;9(7):440–449. doi:10.1302/2046-3758.97.BJR-2019-0325
   PubMed Web of Science ®Google Scholar
• Schlaberg R, Chiu CY, Miller S, et al. Validation of metagenomic next-generation sequencing tests for universal pathogen detection. Arch Pathol Lab Med. 2017;141(6):776–786. doi:10.5858/arpa.2016-0539-RA
   PubMed Web of Science ®Google Scholar
• Palan J, Nolan C, Sarantos K, Westerman R, King R, Foguet P. Culture-negative periprosthetic joint infections. EFORT Open Rev. 2019;4(10):585–594. doi:10.1302/2058-5241.4.180067
   PubMed Web of Science ®Google Scholar
• Miao Q, Ma Y, Wang Q, et al. Microbiological diagnostic performance of metagenomic next-generation sequencing when applied to clinical practice. Clin Infect Dis. 2018;67(suppl_2):S231–S240. doi:10.1093/cid/ciy693
   PubMed Web of Science ®Google Scholar
• Simner PJ, Miller S, Carroll KC. Understanding the promises and hurdles of metagenomic next-generation sequencing as a diagnostic tool for infectious diseases. Clin Infect Dis. 2018;66(5):778–788. doi:10.1093/cid/cix881
   PubMed Web of Science ®Google Scholar
• Klement MR, Cunningham DJ, Wooster BM, et al. Comparing standard versus extended culture duration in acute hip and knee periprosthetic joint infection. J Am Acad Orthop Surg. 2019;27(9):e437–e443. doi:10.5435/JAAOS-D-17-00674
   PubMed Web of Science ®Google Scholar
• Tande AJ, Patel R. Prosthetic joint infection. Clin Microbiol Rev. 2014;27(2):302–345. doi:10.1128/CMR.00111-13
   PubMed Web of Science ®Google Scholar