The Clinical Impact of Metagenomic Next-Generation Sequencing for the Diagnosis of Periprosthetic Joint Infection

References

• Tarabichi M, Shohat N, Goswami K, et al. Diagnosis of periprosthetic joint infection: the potential of next-generation sequencing. J Bone Joint Surg Am. 2018;100(2):147–154. doi:10.2106/JBJS.17.00434
   PubMed Web of Science ®Google Scholar
• Tarabichi M, Shohat N, Goswami K, Parvizi J. Can next generation sequencing play a role in detecting pathogens in synovial fluid? Bone Joint J. 2018;100-b(2):127–133. doi:10.1302/0301-620X.100B2.BJJ-2017-0531.R2
   PubMedGoogle Scholar
• An X, Wang J, Shi W, et al. The effect of passive smoking on early clinical outcomes after total knee arthroplasty among female patients. Risk Manag Healthc Policy. 2021;14:2407–2419. doi:10.2147/RMHP.S309893
   PubMed Web of Science ®Google Scholar
• Berbari EF, Marculescu C, Sia I, et al. Culture-negative prosthetic joint infection. Clin Infect Dis. 2007;45(9):1113–1119. doi:10.1086/522184
   PubMed Web of Science ®Google Scholar
• Chiu CY, Miller SA. Clinical metagenomics. Nat Rev Genet. 2019;20(6):341–355. doi:10.1038/s41576-019-0113-7
   PubMed Web of Science ®Google Scholar
• Kapadia BH, Berg RA, Daley JA, Fritz J, Bhave A, Mont MA. Periprosthetic joint infection. Lancet. 2016;387(10016):386–394. doi:10.1016/S0140-6736(14)61798-0
   PubMed Web of Science ®Google Scholar
• Malekzadeh D, Osmon DR, Lahr BD, Hanssen AD, Berbari EF. Prior use of antimicrobial therapy is a risk factor for culture-negative prosthetic joint infection. Clin Orthop Relat Res. 2010;468(8):2039–2045. doi:10.1007/s11999-010-1338-0
   PubMed Web of Science ®Google Scholar
• Palan J, Nolan C, Sarantos K, Westerman R, King R, Foguet P. Culture-negative periprosthetic joint infections. EFORT Open Rev. 2019;4(10):585–594. doi:10.1302/2058-5241.4.180067
   PubMed Web of Science ®Google Scholar
• Ivy MI, Thoendel MJ, Jeraldo PR, et al. Direct detection and identification of prosthetic joint infection pathogens in synovial fluid by metagenomic shotgun sequencing. J Clin Microbiol. 2018;56(9). doi:10.1128/JCM.00402-18
   PubMed Web of Science ®Google Scholar
• Thoendel M, Jeraldo P, Greenwood-Quaintance KE, et al. A novel prosthetic joint infection pathogen, mycoplasma salivarium, identified by metagenomic shotgun sequencing. Clin Infect Dis. 2017;65(2):332–335. doi:10.1093/cid/cix296
   PubMed Web of Science ®Google Scholar
• He R, Wang Q, Wang J, Tang J, Shen H, Zhang X. Better choice of the type of specimen used for untargeted metagenomic sequencing in the diagnosis of periprosthetic joint infections. Bone Joint J. 2021;103-b(5):923–930. doi:10.1302/0301-620X.103B5.BJJ-2020-0745.R1
   PubMedGoogle Scholar
• Miao Q, Ma Y, Wang Q, et al. Microbiological diagnostic performance of metagenomic next-generation sequencing when applied to clinical practice. Clin Infect Dis. 2018;67(suppl_2):S231–S240. doi:10.1093/cid/ciy693
   PubMed Web of Science ®Google Scholar
• Wilson MR, Sample HA, Zorn KC, et al. Clinical metagenomic sequencing for diagnosis of meningitis and encephalitis. N Engl J Med. 2019;380(24):2327–2340. doi:10.1056/NEJMoa1803396
   PubMed Web of Science ®Google Scholar
• Huang Z, Li W, Lee GC, et al. Metagenomic next-generation sequencing of synovial fluid demonstrates high accuracy in prosthetic joint infection diagnostics: mNGS for diagnosing PJI. Bone Joint Res. 2020;9(7):440–449. doi:10.1302/2046-3758.97.BJR-2019-0325.R2
   PubMed Web of Science ®Google Scholar
• Torchia MT, Amakiri I, Werth P, Moschetti W. Characterization of native knee microorganisms using next-generation sequencing in patients undergoing primary total knee arthroplasty. Knee. 2020;27(3):1113–1119. doi:10.1016/j.knee.2019.12.013
   PubMed Web of Science ®Google Scholar
• Parvizi J, Gehrke T. Definition of periprosthetic joint infection. J Arthroplasty. 2014;29(7):1331. doi:10.1016/j.arth.2014.03.009
   PubMed Web of Science ®Google Scholar
• Parvizi J, Zmistowski B, Berbari EF, et al. New definition for periprosthetic joint infection: from the Workgroup of the Musculoskeletal Infection Society. Clin Orthop Relat Res. 2011;469(11):2992–2994. doi:10.1007/s11999-011-2102-9
   PubMed Web of Science ®Google Scholar
• Li R, Li X, Ni M, Zheng QY, Zhang GQ, Chen JY. Anatomic landmark-guided hip aspiration in the diagnosis of periprosthetic joint infection. Orthopedics. 2021;44(1):e85–e90. doi:10.3928/01477447-20201007-04
   PubMed Web of Science ®Google Scholar
• Tan TL, Kheir MM, Tan DD, Parvizi J. Polymicrobial periprosthetic joint infections: outcome of treatment and identification of risk factors. J Bone Joint Surg Am. 2016;98(24):2082–2088. doi:10.2106/JBJS.15.01450
   PubMed Web of Science ®Google Scholar
• Zhao Z, Song J, Yang C, et al. Prevalence of fungal and bacterial co-infection in pulmonary fungal infections: a metagenomic next generation sequencing-based study. Front Cell Infect Microbiol. 2021;11:749905. doi:10.3389/fcimb.2021.749905
   PubMed Web of Science ®Google Scholar
• Li H, Gao H, Meng H, et al. Detection of pulmonary infectious pathogens from lung biopsy tissues by metagenomic next-generation sequencing. Front Cell Infect Microbiol. 2018;8:205. doi:10.3389/fcimb.2018.00205
   PubMed Web of Science ®Google Scholar
• Della Valle C, Parvizi J, Bauer TW, et al. American Academy of Orthopaedic Surgeons clinical practice guideline on: the diagnosis of periprosthetic joint infections of the hip and knee. J Bone Joint Surg Am. 2011;93(14):1355–1357. doi:10.2106/JBJS.9314ebo
   PubMedGoogle Scholar
• Torchia MT, Austin DC, Kunkel ST, Dwyer KW, Moschetti WE. Next-generation sequencing vs culture-based methods for diagnosing periprosthetic joint infection after total knee arthroplasty: a cost-effectiveness analysis. J Arthroplasty. 2019;34(7):1333–1341. doi:10.1016/j.arth.2019.03.029
   PubMed Web of Science ®Google Scholar
• Li MM, Datto M, Duncavage EJ, et al. Standards and guidelines for the interpretation and reporting of sequence variants in cancer: a joint consensus recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists. J Mol Diagn. 2017;19(1):4–23. doi:10.1016/j.jmoldx.2016.10.002
   PubMed Web of Science ®Google Scholar
• Zhang C, Fang X, Huang Z, et al. Value of mNGS in sonication fluid for the diagnosis of periprosthetic joint infection. Arthroplasty. 2019;1(1):9. doi:10.1186/s42836-019-0006-4
   PubMedGoogle Scholar