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ORIGINAL RESEARCH

Clinical Value of Sampling Time of Metagenomic Next-Generation Sequencing in Patients with Severe Pneumonia

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Pages 5263-5274 | Received 21 Jun 2023, Accepted 10 Aug 2023, Published online: 14 Aug 2023

References

  • Stafylaki D, Maraki S, Vaporidi K, et al. Impact of molecular syndromic diagnosis of severe pneumonia in the management of critically Ill patients. Microbiol Spectr. 2022;10(5):e0161622. doi:10.1128/spectrum.01616-22
  • Nolley EP, Sahetya SK, Hochberg CH, et al. Outcomes among mechanically ventilated patients with severe pneumonia and acute hypoxemic respiratory failure from SARS-CoV-2 and other etiologies. JAMA Netw Open. 2023;6(1):e2250401. doi:10.1001/jamanetworkopen.2022.50401
  • El-Solh AA, Aquilina AT, Dhillon RS, Ramadan F, Nowak P, Davies J. Impact of invasive strategy on management of antimicrobial treatment failure in institutionalized older people with severe pneumonia. Am J Respir Crit Care Med. 2002;166(8):1038–1043. doi:10.1164/rccm.200202-123OC
  • Choi SH, Hong SB, Ko GB, et al. Viral infection in patients with severe pneumonia requiring intensive care unit admission. Am J Respir Crit Care Med. 2012;186(4):325–332. doi:10.1164/rccm.201112-2240OC
  • Chiu CY, Miller SA. Clinical metagenomics. Nat Rev Genet. 2019;20(6):341–355. doi:10.1038/s41576-019-0113-7
  • Gu W, Miller S, Chiu CY. Clinical metagenomic next-generation sequencing for pathogen detection. Annu Rev Pathol. 2019;14:319–338. doi:10.1146/annurev-pathmechdis-012418-012751
  • Han DS, Li ZY, Li R, Tan P, Zhang R, Li JM. mNGS in clinical microbiology laboratories: on the road to maturity. Crit Rev Microbiol. 2019;45:668–685. doi:10.1080/1040841X.2019.1681933
  • Metlay J, Waterer G, Long A, et al. Diagnosis and treatment of adults with community-acquired pneumonia. an official clinical practice guideline of the American thoracic society and infectious diseases society of America. Am J Respir Crit Care Med. 2019;200(7):e45–e67. doi:10.1164/rccm.201908-1581ST
  • Li SX, Qin JJ, Zhou P, et al. The clinical significance of in-house metagenomic next-generation sequencing for bronchoalveolar lavage fluid diagnostics in patients with lower respiratory tract infections. Front Cell Infect Microbiol. 2022;12:961746. doi:10.3389/fcimb.2022.961746
  • Azoulay E, Mokart D, Kouatchet A, Demoule A, Lemiale V. Acute respiratory failure in immunocompromised adults. Lancet Respir Med. 2019;7(2):173–186. doi:10.1016/S2213-2600(18)30345-X
  • Liu Y, Zhang R, Yao B, et al. Metagenomics next-generation sequencing provides insights into the causative pathogens from critically ill patients with pneumonia and improves treatment strategies. Front Cell Infect Microbiol. 2022;12:1094518. doi:10.3389/fcimb.2022.1094518
  • Zhang P, Chen Y, Li SY, et al. Metagenomic next-generation sequencing for the clinical diagnosis and prognosis of acute respiratory distress syndrome caused by severe pneumonia: a retrospective study. PeerJ. 2020;8:e9623. doi:10.7717/peerj.9623
  • Xi Y, Zhou J, Lin ZM, et al. Patients with infectious diseases undergoing mechanical ventilation in the intensive care unit have better prognosis after receiving metagenomic next-generation sequencing assay. Int J Infect Dis. 2022;122:959–969. doi:10.1016/j.ijid.2022.07.062
  • John K, John T, Taljaard J, et al. The outcome of severe varicella pneumonia with respiratory failure admitted to the intensive care unit for mechanical ventilation. Eur Respir J. 2018;52(1):1800407. doi:10.1183/13993003.00407-2018
  • He DH, Liu M, Chen QM, et al. Clinical characteristics and the effect of timing for metagenomic next-generation sequencing in critically ill patients with sepsis. Infect Drug Resist. 2022;15:7377–7387. doi:10.2147/IDR.S390256
  • Sun LM, Zhang SG, Yang ZY, et al. Clinical application and influencing factor analysis of metagenomic next-generation sequencing (mNGS) in ICU patients with sepsis. Front Cell Infect Microbiol. 2022;12:905132. doi:10.3389/fcimb.2022.905132
  • Weng P, Wu LJ, Li Y, et al. Metagenomic next-generation sequencing for the detection of pathogenic microorganisms in patients with pulmonary infection. Am J Transl Res. 2022;14(9):6282–6288.
  • Parize P, Muth E, Richaud C, et al. Untargeted next-generation sequencing-based first-line diagnosis of infection in immunocompromised adults: a multicentre, blinded, prospective study. Clin Microbiol Infect. 2017;23(8):574 e571–574 e576. doi:10.1016/j.cmi.2017.02.006
  • Imlay H, Dasgupta S, Boeckh M, et al. Risk factors for cytomegalovirus reactivation and association with outcomes in critically ill adults with sepsis: a pooled analysis of prospective studies. J Infect Dis. 2021;223(12):2108–2112. doi:10.1093/infdis/jiaa697
  • Huang LT, Zhang X, Pang LS, et al. Viral reactivation in the lungs of patients with severe pneumonia is associated with increased mortality, a multicenter, retrospective study. J Med Virol. 2023;95(1):e28337. doi:10.1002/jmv.28337