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ORIGINAL RESEARCH

Chromosome-Mediated Colistin Resistance in Clinical Isolates of Klebsiella pneumoniae and Escherichia coli: Mutation Analysis in the Light of Genetic Background

, , , ORCID Icon, & ORCID Icon
Pages 6451-6462 | Received 24 Jun 2023, Accepted 10 Aug 2023, Published online: 28 Sep 2023

References

  • Cassir N, Rolain J-M, Brouqui P. A new strategy to fight antimicrobial resistance: the revival of old antibiotics.Front Microbiol. 2014;5:551. doi:10.3389/fmicb.2014.00551
  • Catry B, Cavaleri M, Baptiste K, et al. Colistin resistance mechanisms in Klebsiella pneumoniae strains from Taiwan. Antimicrob Agents Chemother. 2015;59(5):2909–2913. doi:10.1128/AAC.04763-14
  • Binsker U, Käsbohrer A, Hammerl J. A Global colistin use: a review of the emergence of resistant Enterobacterales and the impact on their genetic basis, FEMS Microbiology. Reviews. 2022;46(1):fuab049. doi:10.1093/femsre/fuab049
  • Poirel L, Jayol A, Nordmann P. Polymyxins: antibacterial Activity, Susceptibility Testing, and Resistance Mechanisms Encoded by Plasmids or Chromosomes. Clin Microbiol Rev. 2017;30(2):557–596. doi:10.1128/cmr.00064-16
  • Liu YY, Wang Y, Walsh E, et al. Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study. Lancet Infect Dis. 2016;16(2):161–168. doi:10.1016/S1473-3099(15)00424-7
  • Hinchliffe P, Yang QE, Portal E, et al. Insights into the Mechanistic Basis of Plasmid-Mediated Colistin Resistance from Crystal Structures of the Catalytic Domain of MCR-1. Sci Rep. 2017;7(1):39392. doi:10.1038/srep39392
  • Jaidane N, Bonnin RA, Mansour W, et al. Genomic Insights into Colistin-Resistant Klebsiella pneumoniae from a Tunisian Teaching Hospital. Antimicrob Agents Chemother. 2018;62(2):e01601–17. doi:10.1128/AAC.01601-17
  • Yan A, Guan Z, Raetz CR. An undecaprenyl phosphate- aminoarabinose flippase required for polymyxin resistance in Escherichia coli. J Biol Chem. 2007;282(49):36077–36089. doi:10.1074/jbc.M706172200
  • Olaitan AO, Morand S, Rolain JM. Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria. Front Microbiol. 2014;5:643. doi:10.3389/fmicb.2014.00643
  • Gunn JS. The Salmonella PmrAB regulon: lipopolysaccharide modifications, antimicrobial peptide resistance and more. Trends Microbiol. 2008;16(6):284–290. doi:10.1016/j.tim.2008.03.007
  • Janssen AB, van Schaik W. Harder, better, faster, stronger: colistin resistance mechanisms in Escherichia coli. PLoS Genet. 2021;17(1):e1009262. doi:10.1371/journal.pgen.1009262
  • Jayol A, Nordmann P, Brink A, et al. Heteroresistance to colistin in Klebsiella pneumoniae associated with alterations in the PhoPQ regulatory system. Antimicrob Agents Chemother. 2015;59(5):2780–2784. doi:10.1128/AAC.05055-14
  • McConville TH, Annavajhala MK, Giddins G, et al. CrrB Positively Regulates High-Level Polymyxin Resistance and Virulence in Klebsiella pneumoniae. Cell Rep. 2020;33(4):108313. doi:10.1016/j.celrep.2020.108313
  • Cannatelli A, Giani T, D’Andrea M, et al. MgrB inactivation is a common mechanism of colistin resistance in KPC-producing Klebsiella pneumoniae of clinical origin. Antimicrob Agents Chemother. 2014;58(10):5696–5703. doi:10.1128/AAC.03110-14
  • Srinivasan VB, Rajamohan G. KpnEF, a new member of the Klebsiella pneumoniae cell envelope stress response regulon, is an SMR-type efflux pump involved in broad-spectrum antimicrobial resistance. Antimicrob Agents Chemother. 2013;57(9):4449–4462. doi:10.1128/AAC.02284-12
  • Razavi S, Mirnejad R, Babapour E. Involvement of AcrAB and OqxAB Efflux Pumps in Antimicrobial Resistance of Clinical Isolates of Klebsiella pneumonia. J Appl Biotechnol Rep. 2020;7(4):251–257. doi:10.30491/jabr.2020.120179
  • CLSI. Performance Standards for Antimicrobial Susceptibility Testing. 32. Clinical and Laboratory Standards Institute; 2022.
  • Lam MMC, Wick RR, Watts SC, et al. A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nat Commun. 2021;12(1):4188. doi:10.1038/s41467-021-24448-3
  • Florensa AF, Kaas RS, Clausen PTLC, et al. ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes. Microb Genom. 2022;8(1):000748. doi:10.1099/mgen.0.000748
  • Gaio D, Anantanawat K, To J, et al. Hackflex: low-cost, high-throughput, Illumina Nextera Flex library construction. Microb Genom. 2022;8(1):000744. doi:10.1099/mgen.0.000744
  • Bankevich A, Nurk S, Antipov D, et al. SPAdes: a New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J Comput Biol. 2012;19(5):455–477. doi:10.1089/cmb.2012.0021
  • Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30(14):2068–2069. doi:10.1093/bioinformatics/btu153
  • Vaser R, Adusumalli S, Leng SN, et al. SIFT missense predictions for genomes. Nat Protocols. 2016;11(1):1–9. doi:10.1038/nprot.2015.123
  • Magiorakos AP, Srinivasan A, Carey R, et al. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. Clin Microbiol Infect. 2012;18(3):268–281. doi:10.1111/j.1469-0691.2011.03570.x
  • Delannoy S, Le Devendec L, Jouy E, et al. Characterization of Colistin-Resistant Escherichia coli Isolated from Diseased Pigs in France. Front Microbiol. 2017;8:2278. doi:10.3389/fmicb.2017.02278
  • Azam M, Gaind R, Yadav G, et al. Colistin Resistance Among Multiple Sequence Types of Klebsiella pneumoniae Is Associated with Diverse Resistance Mechanisms: a Report From India. Front Microbiol. 2021;12:609840. doi:10.3389/fmicb.2021.609840
  • Wright MS, Suzuki Y, Jones MB, et al. Genomic and transcriptomic analyses of colistin-resistant clinical isolates of Klebsiella pneumoniae reveal multiple pathways of resistance. Antimicrob Agents Chemother. 2015;59(1):536–543. doi:10.1128/AAC.04037-14
  • Sun S, Negrea A, Rhen M, et al. Genetic Analysis of Colistin Resistance in Salmonella enterica Serovar Typhimurium. Antimicrob Agents Chemother. 2009;53(6):2298–2305. doi:10.1128/AAC.01016-08
  • Mills J, Rojas L, Marshall SH, et al. Risk Factors for and Mechanisms of Colistin Resistance Among Enterobacterales: getting at the CORE of the Issue. Open Forum Infect Dis. 2021;8(7):ofab145. doi:10.1093/ofid/ofab145
  • Quesada A, Porrero MC, Tellez S, et al. Polymorphism of genes encoding PmrAB in colistin-resistant strains of Escherichia coli and Salmonella enterica isolated from poultry and swine. J Antimicrob Chemother. 2015;70(1):71–74. doi:10.1093/jac/dku320
  • Cheng YH, Lin TL, Pan YJ, et al. Colistin resistance mechanisms in Klebsiella pneumoniae strains from Taiwan. Antimicrob Agents Chemother. 2015;59(5):2909–2913. doi:10.1128/AAC.04763-14
  • Rodrigues ACS, Santos ICO, Campos CC, et al. Non-clonal occurrence of pmrB mutations associated with polymyxin resistance in carbapenem-resistant Klebsiella pneumoniae in Brazil. Mem Inst Oswaldo Cruz. 2019;114:e180555. doi:10.1590/0074-02760180555
  • Hee Lee T, Cho M, Lee J, et al. Molecular Characterization of Carbapenem-resistant, Colistin-resistant Klebsiella pneumoniae Isolates from a Tertiary Hospital in Jeonbuk, Korea. J Bacteriol Virol. 2021;51(3):120–127. doi:10.4167/jbv.2021.51.3.120
  • Mazumder R, Hussain A, Abdullah A, et al. International High-Risk Clones Among Extended-Spectrum β-Lactamase-Producing Escherichia coli in Dhaka, Bangladesh. Front Microbiol. 2021;4(12):736464. doi:10.3389/fmicb.2021.736464
  • Wyres KL, Lam MC, Holt KE. Population genomics of Klebsiella pneumoniae. Nat Rev Microbiol. 2020;18(6):344–359. doi:10.1038/s41579-019-0315-1
  • Di Tella D, Tamburro M, Guerrizio G, et al. Molecular Epidemiological Insights into Colistin-Resistant and Carbapenemases Producing Clinical Klebsiella pneumoniae Isolates. Infect Drug Resist. 2019;12:3783–3795. doi:10.2147/IDR.S226416