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Expert Review of Precision Medicine and Drug Development
Personalized medicine in drug development and clinical practice
Volume 9, 2024 - Issue 1
362
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Review

Advances in the field of developing biomarkers for re-irradiation: a how-to guide to small, powerful data sets and artificial intelligence

, , , , &
Pages 3-16 | Received 20 Jul 2023, Accepted 28 Feb 2024, Published online: 11 Mar 2024
 

ABSTRACT

Introduction

Patient selection remains challenging as the clinical use of re-irradiation (re-RT) increases. Re-RT data are limited to retrospective studies and small prospective single-institution reports, resulting in small, heterogenous data sets. Validated prognostic and predictive biomarkers are derived from large-volume studies with long-term follow-up. This review aims to examine existing re-RT publications and available data sets and discuss strategies using artificial intelligence (AI) to approach small data sets to optimize the use of re-RT data.

Methods

Re-RT publications were identified where associated public data were present. The existing literature on small data sets to identify biomarkers was also explored.

Results

Publications with associated public data were identified, with glioma and nasopharyngeal cancers emerging as the most common tumor sites where the use of re-RT was the primary management approach. Existing and emerging AI strategies have been used to approach small data sets including data generation, augmentation, discovery, and transfer learning.

Conclusions

Further data is needed to generate adaptive frameworks, improve the collection of specimens for molecular analysis, and improve the interpretability of results in re-RT data.

Article highlights

  • Given prolonged survival for certain malignancies and technological improvements of radiation delivery, the indications for re-RT have been increasing.

  • Most re-RT data are limited to retrospective studies or single-institution experiences.

  • Given the limitations of small data sets for re-RT patients, computational methods may be used to enhance existing data to arrive at clinically actionable biomarkers.

  • Limitations to clinically use biomarkers include validation and identifying the optimal method to collect specimens for molecular analysis.

Abbreviations

CNS=

Central Nervous System

CGGA=

Chinese Glioma Genome Atlas

CV=

Cross-Validation

DB-MTD=

Distance-Based Mega-Trend-Diffusion

EPV=

Events per Predictor Variable

GA=

Genetic Algorithms

GVES=

Gene Vector for Each Sample

GyE=

Gray equivalent

HSRT=

Hypofractionated stereotactic radiation therapy

IMIT=

Intensity Modulated Ion Therapy

IMPT=

Intensity Modulated Proton Therapy

IMRT=

Intensity Modulated Radiation Therapy

KPS=

Karnofsky Performance Score

LASSO=

Least Absolute Shrinkage and Selection Operator

MEVT=

- Modified Extreme Value Theory

mRMR=

Maximum Relevance Minimum Redundancy

OS=

Overall Survival

P=

- Prospective

PFS=

Progression-Free Survival

R=

Retrospective

RFE=

Recursive Feature Elimination

RBE=

Relative Biological Effectiveness

Re-RT=

Reirradiation

S=

Systematic review

SRS=

Stereotactic radiosurgery

TCGA=

The Cancer Genome Atlas

Declaration of interests

The authors have no relevant affiliations or financial involvement with any organization or entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript. This includes employment, consultancies, honoraria, stock ownership or options, expert testimony, grants or patents received or pending, or royalties.

Reviewer disclosures

Peer reviewers on this manuscript have no relevant financial or other relationships to disclose.

Author contributions

All authors have substantially contributed to the conception and design of the review article and interpreting the relevant literature, and have been involved in writing the review article or revised it for intellectual content. All authors have read and agreed to the published version of the manuscript.

Additional information

Funding

This paper was funded in part by the NCI NIH intramural program (ZID BC 010990).