Artificial bacterial consortium for bioremediation of hydrocarbon polluted sites

References

• Adams, Godleads Omokhagbor, Prekeyi Tawari Fufeyin, Samson Eruke Okoro, and Igelenyah Ehinomen. 2020. “Bioremediation, Biostimulation and Bioaugmention: A Review.” International Journal of Environmental Bioremediation & Biodegradation 3 (1): 28–39. https://doi.org/10.12691/ijebb-3-1-5
   Google Scholar
• Aqeel, Amna, Zahid Hussain, Qurat-Ul-Ain Aqeel, Javaria Zafar, Naureen Ehsan, and Mahnoor Tariq. 2021. “Enrichment and Characterization of Hydrocarbon Degrading Bacteria from Various Oil-Contaminated Sites in Pakistan.” Geomicrobiology Journal 38 (7): 577–587. https://doi.org/10.1080/01490451.2021.1903625
   Web of Science ®Google Scholar
• Barbato, Marta, Francesca Mapelli, Bessem Chouaia, Elena Crotti, Daniele Daffonchio, and Sara Borin. 2015. “Draft Genome Sequence of the Hydrocarbon-Degrading Bacterium Alcanivorax dieselolei KS-293 Isolated from Surface Seawater in the Eastern Mediterranean Sea.” Genome Announcements 3 (6): e01424-15. https://doi.org/10.1128/genomeA.01424-15
   PubMedGoogle Scholar
• Bovio, Elena, Giorgio Gnavi, Valeria Prigione, Federica Spina, Renata Denaro, Michail Yakimov, Rosario Calogero, Francesca Crisafi, and Giovanna Cristina Varese. 2017. “The Culturable Mycobiota of a Mediterranean Marine Site after an Oil Spill: Isolation, Identification and Potential Application in Bioremediation.” The Science of the Total Environment 576: 310–318. https://doi.org/10.1016/j.scitotenv.2016.10.064
   PubMed Web of Science ®Google Scholar
• Brzeszcz, Joanna, Tomasz Skalski, Leszek Jankowski, and Piotr Kapusta. 2023. “How Do Microbial Communities Deal with Chronic Hydrocarbon Presence in Oil Seep Soils? Data from Historical Hand‐Dug Oil Wells.” Land Degradation & Development 34 (5): 1283–1296. https://doi.org/10.1002/ldr.4531
   Web of Science ®Google Scholar
• Cappello, Simone, Renata Denaro, Maria Genovese, Laura Giuliano, and Michail M. Yakimov. 2007. “Predominant Growth of Alcanivorax during Experiments on “Oil Spill Bioremediation” in Mesocosms.” Microbiological Research 162 (2): 185–190. https://doi.org/10.1016/j.micres.2006.05.010
   PubMed Web of Science ®Google Scholar
• Cappello, Simone, Maria Genovese, Renata Denaro, Santina Santisi, Anna Volta, Martina Bonsignore, Giuseppe Mancini, Laura Giuliano, Lucrezia Genovese, and Michail M. Yakimov. 2014. “Quick Stimulation of Alcanivorax sp. by Bioemulsificant EPS2003 on Microcosm Oil Spill Simulation.” Brazilian Journal of Microbiology: [Publication of the Brazilian Society for Microbiology] 45 (4): 1317–1323. https://doi.org/10.1590/s1517-83822014000400023
   PubMed Web of Science ®Google Scholar
• Catania, Valentina, Santina Santisi, Geraldina Signa, Salvatrice Vizzini, Antonio Mazzola, Simone Cappello, Michail M. Yakimov, and Paola Quatrini. 2015. “Intrinsic Bioremediation Potential of a Chronically Polluted Marine Coastal Area.” Marine Pollution Bulletin 99 (1-2): 138–149. https://doi.org/10.1016/j.marpolbul.2015.07.042
   PubMed Web of Science ®Google Scholar
• Chebbi, Alif, Dorra Hentati, Hatem Zaghden, Nidhal Baccar, Fatma Rezgui, Manel Chalbi, Sami Sayadi, and Mohamed Chamkha. 2017. “Polycyclic Aromatic Hydrocarbon Degradation and Biosurfactant Production by a Newly Isolated Pseudomonas sp. Strain from Used Motor Oil-Contaminated Soil.” International Biodeterioration & Biodegradation 122: 128–140. https://doi.org/10.1016/j.ibiod.2017.05.006
   Web of Science ®Google Scholar
• Coll, Marta, Chiara Piroddi, Jeroen Steenbeek, Kristin Kaschner, Frida Ben Rais Lasram, Jacopo Aguzzi, Enric Ballesteros, et al. 2010. “The Biodiversity of the Mediterranean Sea: Estimates, Patterns, and Threats.” PloS One 5 (8): e11842. https://doi.org/10.1371/journal.pone.0011842
   PubMed Web of Science ®Google Scholar
• Daffonchio, Daniele, Manuel Ferrer, Francesca Mapelli, Ameur Cherif, Alvaro Lafraya, Hanan I. Malkawi, Michail M. Yakimov, et al. 2013. “Bioremediation of Southern Mediterranean Oil Polluted Sites Comes of Age.” New Biotechnology 30 (6): 743–748. https://doi.org/10.1016/j.nbt.2013.05.006
   PubMed Web of Science ®Google Scholar
• Darmawan, Raden, Haruhiko Nakata, Hiroto Ohta, Takuro Niidome, Kiyoshi Takikawa, and Shigeru Morimura. 2015. “Isolation and Evaluation of PAH Degrading Bacteria.” Journal of Bioremediation & Biodegradation 06 (03): 1000283. https://doi.org/10.4172/2155-6199.1000283
   Google Scholar
• Fodelianakis, Stylianos, E. Antoniou, Francesca Mapelli, Mirko Magagnini, Maria Nikolopoulou, Ramona Marasco, Marta Barbato, et al. 2015. “Allochthonous Bioaugmentation in Ex Situ Treatment of Crude Oil-Polluted Sediments in the Presence of an Effective Degrading Indigenous Microbiome.” Journal of Hazardous Materials 287: 78–86. https://doi.org/10.1016/j.jhazmat.2015.01.038
   PubMed Web of Science ®Google Scholar
• Ghazali, Farinazleen Mohamad, Raja Noor Z. A. Rahman, Abu Bakar Salleh, and Mahiran Basri. 2004. “Biodegradation of Hydrocarbons in Soil by Microbial Consortium.” International Biodeterioration & Biodegradation 54 (1): 61–67. https://doi.org/10.1016/j.ibiod.2004.02.002
   Web of Science ®Google Scholar
• Guesmi, Amel, Besma Ettoumi, Darine El Hidri, Jihene Essanaa, Hanene Cherif, Francesca Mapelli, Ramona Marasco, Eleonora Rolli, Abdellatif Boudabous, and Ameur Cherif. 2013. “Uneven Distribution of Halobacillus trueperi Species in Arid Natural Saline Systems of Southern Tunisian Sahara.” Microbial Ecology 66 (4): 831–839. https://doi.org/10.1007/s00248-013-0274-4
   PubMed Web of Science ®Google Scholar
• Hassanshahian, Mehdi, Giti Emtiazi, and Simone Cappello. 2012. “Isolation and Characterization of Crude-Oil-Degrading Bacteria from the Persian Gulf and the Caspian Sea.” Marine Pollution Bulletin 64 (1): 7–12. https://doi.org/10.1016/j.marpolbul.2011.11.006
   PubMed Web of Science ®Google Scholar
• Hassanshahian, Mehdi, Giti Emtiazi, Gabriella Caruso, and Simone Cappello. 2014. “Bioremediation (Bioaugmentation/Biostimulation) Trials of Oil Polluted Seawater: A Mesocosm Simulation Study.” Marine Environmental Research 95: 28–38. https://doi.org/10.1016/j.marenvres.2013.12.010
   PubMed Web of Science ®Google Scholar
• Hong, Yue-Hui, Cong-Cong Ye, Qian-Zhi Zhou, Xiao-Ying Wu, Jian-Ping Yuan, Juan Peng, Hailin Deng, and Jiang-Hai Wang. 2017. “Genome Sequencing Reveals the Potential of Achromobacter sp. HZ01 for Bioremediation.” Frontiers in Microbiology 8: 1507. https://doi.org/10.3389/fmicb.2017.01507
   PubMed Web of Science ®Google Scholar
• Huang, Xiang-Feng, Wei Guan, Jia Liu, Li-Jun Lu, Jing-Cheng Xu, and Qi Zhou. 2010. “Characterization and Phylogenetic Analysis of Biodemulsifier-Producing Bacteria.” Bioresource Technology 101 (1): 317–323. https://doi.org/10.1016/j.biortech.2009.07.086
   PubMed Web of Science ®Google Scholar
• Kalman, Sue., Kristine L. Kiehne, John L. Libs, and Takashi Yamamoto. 1993. “Cloning of a Novel cryIC-Type Gene from a Strain of Bacillus thuringiensis Subsp. galleriae.” Applied and Environmental Microbiology 59 (4): 1131–1137. https://doi.org/10.1128/aem.59.4.1131-1137.1993
   PubMed Web of Science ®Google Scholar
• Kodama, Yumiko, Lies Indah Stiknowati, Atsuko Ueki, Katsuji Ueki, and Kazuya Watanabe. 2008. “Thalassospira tepidiphila sp. nov., a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Isolated from Seawater.” International Journal of Systematic and Evolutionary Microbiology 58 (Pt 3): 711–715. https://doi.org/10.1099/ijs.0.65476-0
   PubMedGoogle Scholar
• Ma, Meng, Li Zheng, Xiaofei Yin, Wei Gao, Bin Han, Qian Li, Aimei Zhu, Hao Chen, and Huanghao Yang. 2021. “Reconstruction and Evaluation of Oil-Degrading Consortia Isolated from Sediments of Hydrothermal Vents in the South Mid-Atlantic Ridge.” Scientific Reports 11 (1): 1456. https://doi.org/10.1038/s41598-021-80991-5
   PubMed Web of Science ®Google Scholar
• Maddela, Naga Raju, Laura Scalvenzi, and Kadiyala Venkateswarlu. 2017. “Microbial Degradation of Total Petroleum Hydrocarbons in Crude Oil: A Field-Scale Study at the Low-Land Rainforest of Ecuador.” Environmental Technology 38 (20): 2543–2550. https://doi.org/10.1080/09593330.2016.1270356
   PubMed Web of Science ®Google Scholar
• Mahjoubi, Mouna, Habibu Aliyu, Simone Cappello, Mohamed Naifer, Yasmine Souissi, Don A. Cowan, and Ameur Cherif. 2019. “The Genome of Alcaligenes aquatilis Strain BU33N: Insights into Hydrocarbon Degradation Capacity.” PloS One 14 (9): e0221574. https://doi.org/10.1371/journal.pone.0221574
   PubMed Web of Science ®Google Scholar
• Mahjoubi, Mouna, Habibu Aliyu, Mohamed Neifar, Simone Cappello, Habib Chouchane, Yasmine Souissi, Ahmed Salaheddine Masmoudi, Don A. Cowan, and Ameur Cherif. 2021. “Genomic Characterization of a Polyvalent Hydrocarbonoclastic Bacterium Pseudomonas sp. strain BUN14.” Scientific Reports 11 (1): 8124. https://doi.org/10.1038/s41598-021-87487-2
   PubMed Web of Science ®Google Scholar
• Mahjoubi, Mouna, Simone Cappello, Santina Santisi, Afef Najjari, Yasmine Souissi, and Ameur Cherif. 2022. “Investigation of Microbial Community Changes in Petroleum Polluted Sediments during Hydrocarbons Degradation.” Soil and Sediment Contamination: An International Journal 31 (2): 200–219. https://doi.org/10.1080/15320383.2021.1920573
   Web of Science ®Google Scholar
• Mahjoubi, Mouna, Simone Cappello, Yasmine Souissi, Atef Jaouani, and Ameur Cherif. 2018. “Microbial Bioremediation of Petroleum Hydrocarbon–Contaminated Marine Environments.” In Recent Insights in Petroleum Science and Engineering, edited by Mansoor Zoveidavianpoor, 325–350. Croatia: Intechopen. https://doi.org/10.5772/intechopen.72207
   Google Scholar
• Mahjoubi, Mouna, Atef Jaouani, Amel Guesmi, Sonia Ben Amor, Ahlem Jouini, Hanen Cherif, Afef Najjari, Abdellatif Boudabous, Nedra Koubaa, and Ameur Cherif. 2013. “Hydrocarbonoclastic Bacteria Isolated from Petroleum Contaminated Sites in Tunisia: Isolation, Identification and Characterization of the Biotechnological Potential.” New Biotechnology 30 (6): 723–733. https://doi.org/10.1016/j.nbt.2013.03.004
   PubMed Web of Science ®Google Scholar
• Michalska, Justyna, Artur Piński, Joanna Żur, and Agnieszka Mrozik. 2020. “Selecting Bacteria Candidates for the Bioaugmentation of Activated Sludge to Improve the Aerobic Treatment of Landfill Leachate.” Water 12 (1): 140. https://doi.org/10.3390/w12010140
   Web of Science ®Google Scholar
• Mrozik, Agnieszka, and Zofia Piotrowska-Seget. 2010. “Bioaugmentation as a Strategy for Cleaning up of Soils Contaminated with Aromatic Compounds.” Microbiological Research 165 (5): 363–375. https://doi.org/10.1016/j.micres.2009.08.001
   PubMed Web of Science ®Google Scholar
• Neifar, Mohamed, Habib Chouchane, Afef Najjari, Darine El Hidri, Mouna Mahjoubi, Kais Ghedira, Fatma Naili, et al. 2019. “Genome Analysis Provides Insights into Crude Oil Degradation and Biosurfactant Production by Extremely Halotolerant Halomonas desertis G11 Isolated from Chott El-Djerid Salt-Lake in Tunisian Desert.” Genomics 111 (6): 1802–1814. https://doi.org/10.1016/j.ygeno.2018.12.003
   PubMed Web of Science ®Google Scholar
• Nikolopoulou, Maria, P. Eickenbusch, Nikos Pasadakis, Danae Venieri, and Nicolas Kalogerakis. 2013. “Microcosm Evaluation of Autochthonous Bioaugmentation to Combat Marine Oil Spills.” New Biotechnology 30 (6): 734–742. https://doi.org/10.1016/j.nbt.2013.06.005
   PubMed Web of Science ®Google Scholar
• Nikolopoulou, Maria, Nikos Pasadakis, and Nicolas Kalogerakis. 2013. “Evaluation of Autochthonous Bioaugmentation and Biostimulation during Bicrocosm-Simulated Oil Spills.” Marine Pollution Bulletin 72 (1): 165–173. https://doi.org/10.1016/j.marpolbul.2013.04.007
   PubMed Web of Science ®Google Scholar
• Nogi, Yuichi, Masaki Yoshizumi, and Masayuki Miyazaki. 2014. “Thalassospira povalilytica sp. nov., a Polyvinyl-Alcohol-Degrading Marine Bacterium.” International Journal of Systematic and Evolutionary Microbiology 64 (Pt 4): 1149–1153. https://doi.org/10.1099/ijs.0.058321-0
   PubMedGoogle Scholar
• Nzila, Alexis, Camila Ortega Ramirez, Musa M. Musa, Saravanan Sankara, Chanbasha Basheer, and Qing X. Li. 2018. “Pyrene Biodegradation and Proteomic Analysis in Achromobacter xylosoxidans, PY4 Strain.” International Biodeterioration & Biodegradation 130: 40–47. https://doi.org/10.1016/j.ibiod.2018.03.014
   Web of Science ®Google Scholar
• Pacwa-Płociniczak, Magdalena, Tomasz Płociniczak, Joanna Iwan, Monika Żarska, Mirosław Chorążewski, Marzena Dzida, and Zofia Piotrowska-Seget. 2016. “Isolation of Hydrocarbon-Degrading and Biosurfactant-Producing Bacteria and Assessment Their Plant Growth-Promoting Traits.” Journal of Environmental Management 168: 175–184. https://doi.org/10.1016/j.jenvman.2015.11.058
   PubMed Web of Science ®Google Scholar
• Patowary, Kaustuvmani, Rupshikha Patowary, Mohan C. Kalita, and Suresh Deka. 2016. “Development of an Efficient Bacterial Consortium for the Potential Remediation of Hydrocarbons from Contaminated Sites.” Frontiers in Microbiology 7: 1092. https://doi.org/10.3389/fmicb.2016.01092
   PubMed Web of Science ®Google Scholar
• Perdigão, Rafaela, C. Marisa R. Almeida, Catarina Magalhães, Sandra Ramos, Ana L. Carolas, Bruno S. Ferreira, Maria F. Carvalho, and Ana P. Mucha. 2021. “Bioremediation of Petroleum Hydrocarbons in Seawater: Prospects of Using Lyophilized Native Hydrocarbon-Degrading Bacteria.” Microorganisms 9 (11): 2285. https://doi.org/10.3390/microorganisms9112285
   PubMed Web of Science ®Google Scholar
• Rache-Arce, Diana Carolina, Maryuris Machacado-Salas, and Doris Rosero-García. 2022. “Hydrocarbon-Degrading Bacteria in Colombia: Systematic Review.” Biodegradation 33 (2): 99–116. https://doi.org/10.1007/s10532-022-09976-z
   PubMed Web of Science ®Google Scholar
• Rizzo, Pietro, Matilde Malerba, Antonio Bucci, Anna M. Sanangelantoni, Sara Remelli, and Fulvio Celico. 2020. “Potential Enhancement of the in-Situ Bioremediation of Contaminated Sites through the Isolation and Screening of Bacterial Strains in Natural Hydrocarbon Springs.” Water 12 (8): 2090. https://doi.org/10.3390/w12082090
   Web of Science ®Google Scholar
• Rochman, Fauziah F., Andriy Sheremet, Ivica Tamas, Alireza Saidi-Mehrabad, Joong-Jae Kim, Xiaoli Dong, Christoph W. Sensen, Lisa M. Gieg, and Peter F. Dunfield. 2017. “Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond.” Frontiers in Microbiology 8: 1845. https://doi.org/10.3389/fmicb.2017.01845
   PubMed Web of Science ®Google Scholar
• Rondon-Afanador, Cinthya, Gustavo Pinilla-Meza, Francy C. Casallas-Cuervo, Camila Diaz-Vanegas, Daniela Barreto-Gomez, Carolina Benavides, Nicole Buitrago, et al. 2023. “Bioremediation of Heavy Oily Sludge: A Microcosms Study.” Biodegradation 34 (1): 1–20. https://doi.org/10.1007/s10532-022-10006-1
   PubMed Web of Science ®Google Scholar
• Santisi, Santina, Simone Cappello, Maurizio Catalfamo, Giuseppe Mancini, Mehdi Hassanshahian, Lucrezia Genovese, Laura Giuliano, and Michail M. Yakimov. 2015. “Biodegradation of Crude Oil by Individual Bacterial Strains and a Mixed Bacterial Consortium.” Brazilian Journal of Microbiology: [Publication of the Brazilian Society for Microbiology] 46 (2): 377–387. https://doi.org/10.1590/S1517-838246120131276
   PubMed Web of Science ®Google Scholar
• Sattar, Shehla, Samina Siddiqui, Asim Shahzad, Asghari Bano, Muhammad Naeem, Rahib Hussain, Naeem Khan, Basit Latief Jan, and Humaira Yasmin. 2022. “Comparative Analysis of Microbial Consortiums and Nanoparticles for Rehabilitating Petroleum Waste Contaminated Soils.” Molecules (Basel, Switzerland) 27 (6): 1945. https://doi.org/10.3390/molecules27061945
   PubMed Web of Science ®Google Scholar
• Shi, Ke., Qi Zhang, Jianliang Xue, Xi Chen, Yunqian Chen, Yanlu Qiao, Yuping Yang, and Jingkuan Sun. 2020. “Study on the Degradation Performance and Bacterial Community of Bioaugmentation in Petroleum-Pollution Seawater.” Journal of Environmental Chemical Engineering 8 (4): 103900. https://doi.org/10.1016/j.jece.2020.103900
   Web of Science ®Google Scholar
• Stepanova, Anna Yurievna, Evgeny Aleksandrovich Gladkov, Ekaterina Sergeevna Osipova, Olga Victorovna Gladkova, and Dmitry Viktorovich Tereshonok. 2022. “Bioremediation of Soil from Petroleum Contamination.” Processes 10 (6): 1224. https://doi.org/10.3390/pr10061224
   Web of Science ®Google Scholar
• Sun, Ji-Quan, Lian Xu, Xue-Ying Liu, Gui-Fang Zhao, Hua Cai, Yong Nie, and Xiao-Lei Wu. 2018. “Functional Genetic Diversity and Culturability of Petroleum-Degrading Bacteria Isolated from Oil-Contaminated Soils.” Frontiers in Microbiology 9: 1332. https://doi.org/10.3389/fmicb.2018.01332
   PubMed Web of Science ®Google Scholar
• Viñas, Marc, Jordi Sabaté, María José Espuny, and Anna M. Solanas. 2005. “Bacterial Community Dynamics and Polycyclic Aromatic Hydrocarbon Degradation during Bioremediation of Heavily Creosote-Contaminated Soil.” Applied and Environmental Microbiology 71 (11): 7008–7018. https://doi.org/10.1128/AEM.71.11.7008-7018.2005
   PubMed Web of Science ®Google Scholar
• Wang, Wanpeng, and Zongze Shao. 2012. “Genes Involved in Alkane Degradation in the Alcanivorax hongdengensis Strain A-11-3.” Applied Microbiology and Biotechnology 94 (2): 437–448. https://doi.org/10.1007/s00253-011-3818-x
   PubMed Web of Science ®Google Scholar
• Yakimov, Michail M., Kenneth N. Timmis, and Peter N. Golyshin. 2007. “Obligate Oil-Degrading Marine Bacteria.” Current Opinion in Biotechnology 18 (3): 257–266. https://doi.org/10.1016/j.copbio.2007.04.006
   PubMed Web of Science ®Google Scholar
• Zadjelovic, Vinko, Matthew I. Gibson, Cristina Dorador, and Joseph Christie-Oleza. 2020. “Genome of Alcanivorax sp. 24: A Hydrocarbon Degrading Bacterium Isolated from Marine Plastic Debris.” Marine Genomics 49: 100686. https://doi.org/10.1016/j.margen.2019.05.001
   Web of Science ®Google Scholar
• Zhou, Haiyan, Hui Wang, Yong Huang, and Tingting Fang. 2016. “Characterization of Pyrene Degradation by Halophilic Thalassospira sp. strain TSL5-1 Isolated from the Coastal Soil of Yellow Sea, China.” International Biodeterioration & Biodegradation 107: 62–69. https://doi.org/10.1007/s00253-011-3818-x10.1016/j.ibiod.2015.10.022
   Web of Science ®Google Scholar