In-silico analysis and transformation of OsMYB48 transcription factor driven by CaMV35S promoter in model plant – Nicotiana tabacum L. conferring abiotic stress tolerance

References

• Meshi T, Iwabuchi M. Plant transcription factors. Plant Cell Physiol. 1995;36:1405–20.
   PubMed Web of Science ®Google Scholar
• Liu LJ, Zhang YC, Li QH, Sang Y, Mao J, Lian HL, Yang HQ. COP1-mediated ubiquitination of CONSTANS is implicated in cryptochrome regulation of flowering in arabidopsis. Plant Cell. 2008;20(2):292–306. doi:10.1105/tpc.107.057281.
   PubMed Web of Science ®Google Scholar
• Du HAI, Wang YB, Xie YI, Liang ZHE, Jiang SJ, Zhang SS, Huang Y-B, Tang Y-X. Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants. DNA Res. 2013;20(5):437–48. doi:10.1093/dnares/dst021.
   PubMed Web of Science ®Google Scholar
• Wang H, Wang H, Shao H, Tang X. Recent advances in utilizing transcription factors to improve plant abiotic stress tolerance by transgenic technology. Front Plant Sci. 2016;7:67. doi:10.3389/fpls.2016.00067.
   PubMed Web of Science ®Google Scholar
• Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L. MYB transcription factors in ara-bidopsis. Trends Plant Sci. 2010;15(10):573–81. doi:10.1016/j.tplants.2010.06.005.
   PubMed Web of Science ®Google Scholar
• Ambawat S, Sharma P, Yadav NR, Yadav RC. MYB transcription factor genes as regulators for plant re-sponses: an overview. Physiol Mol Biol Plants. 2013;19(3):307–21. doi:10.1007/s12298-013-0179-1.
   PubMed Web of Science ®Google Scholar
• Roy S. Function of MYB domain transcription factors in abiotic stress and epigenetic control of stress response in plant genome. Plant Signal Behav. 2016;11(1):e1117723. doi:10.1080/15592324.2015.1117723.
   PubMed Web of Science ®Google Scholar
• Erpen L, Devi HS, Grosser JW, Dutt M. Potential use of the DREB/ERF, MYB, NAC and WRKY transcription factors to improve abiotic and biotic stress in transgenic plants. Plant Cell Tiss Organ Cult. 2018;132(1):1–25. doi:10.1007/s11240-017-1320-6.
   Web of Science ®Google Scholar
• El-Kereamy A, Bi YM, Ranathunge K, Beatty PH, Good AG, Rothstein SJ. The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism. PloS One. 2012;7(12):e52030. doi:10.1371/journal.pone.0052030.
   PubMed Web of Science ®Google Scholar
• Meng X, Wang JR, Wang GD, Liang XQ, Li XD, Meng QW. An R2R3-MYB gene, LeAN2, positively regulated the thermo-tolerance in transgenic tomato. J Plant Physiol. 2015;175:1–8. doi:10.1016/j.jplph.2014.09.018.
   PubMed Web of Science ®Google Scholar
• Zhao Y, Cheng X, Liu X, Wu H, Bi H, Xu H. The wheat MYB transcription factor TaMYB31 is involved in drought stress responses in arabidopsis. Front Plant Sci. 2018;9:1426. doi:10.3389/fpls.2018.01426.
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, Knyaz C, Tamura K, Battistuzzi FU. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547. doi:10.1093/molbev/msy096.
   PubMed Web of Science ®Google Scholar
• Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009;37(suppl_2):W202–08. doi:10.1093/nar/gkp335.
   PubMedGoogle Scholar
• Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rombauts S. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 2002;30(1):325–27. doi:10.1093/nar/30.1.325.
   PubMed Web of Science ®Google Scholar
• Hu B, Jin J, Guo AY, Zhang H, Luo J, Gao G. GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics. 2015;31(8):1296–97. doi:10.1093/bioinformatics/btu817.
   PubMed Web of Science ®Google Scholar
• Gasteiger E, Hoogland C, Gattiker A, Wilkins MR, Appel RD, Bairoch A. Protein identification and analysis tools on the ExPASy server. The proteomics protocols handbook. Humana press; 2005. p. 571–607.
   Google Scholar
• Yu CS, Chen YC, Lu CH, Hwang JK. Prediction of protein subcellular localization. Proteins Struct Funct Bioinf. 2006;64(3):643–51. doi:10.1002/prot.21018.
   PubMed Web of Science ®Google Scholar
• Russell DW, Sambrook J. Molecular cloning: a laboratory manual (Vol. 1, p. 112). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory; 2001.
   Google Scholar
• Horsch RB, Fry JE, Hoffmann NL, Wallroth M, Eichholtz D, Rogers SG, Fraley RT. A simple and general method for transferring genes into plants. Science. 1985;227(4691):1229–31. doi:10.1126/science.227.4691.1229.
   PubMed Web of Science ®Google Scholar
• Murray MG, Thompson W. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 1980;8(19):4321–26. doi:10.1093/nar/8.19.4321.
   PubMed Web of Science ®Google Scholar
• Du H, Yang SS, Liang Z, Feng BR, Liu L, Huang YB, Tang YX. Genome-wide analysis of the MYB transcription factor superfamily in soybean. BMC Plant Biol. 2012;12(1):1–22. doi:10.1186/1471-2229-12-106.
   PubMedGoogle Scholar
• Stracke R, Werber M, Weisshaar B. The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol. 2001;4(5):447–56. doi:10.1016/S1369-5266(00)00199-0.
   PubMed Web of Science ®Google Scholar
• Islam M, Hasan M, Hoque H, Jewel NA, Bhuiyan M, Hossain F, Prodhan SH. Characterization of transcription factor MYB59 and expression profiling in response to low K+ and NO3− in indica rice (Oryza sativa L.). J Genet Eng Biotechnol. 2021;19(1):1–14. doi:10.1186/s43141-021-00248-6.
   PubMed Web of Science ®Google Scholar
• Smita S, Katiyar A, Chinnusamy V, Pandey DM, Bansal KC. Transcriptional regulatory network analysis of MYB transcription factor family genes in rice. Front Plant Sci. 2015;6:1157. doi:10.3389/fpls.2015.01157.
   PubMed Web of Science ®Google Scholar
• Li Z, Peng R, Tian Y, Han H, Xu J, Yao Q. Genome-wide identification and analysis of the MYB transcription factor superfamily in Solanum lycopersicum. Plant Cell Physiol. 2016;57(8):1657–77. doi:10.1093/pcp/pcw091.
   PubMed Web of Science ®Google Scholar
• Ahmad Y, Haider S, Iqbal J, Abbasi BA, Yaseen T, Mahmood T. The mechanisms of genome editing technologies in crop plants. In: Principles and practices of OMICS and genome editing for crop improvement. Cham: Springer International Publishing; 2022. pp. 295–313.
   Google Scholar
• Haider S, Raza A, Iqbal J, Shaukat M, Mahmood T. Analyzing the regulatory role of heat shock transcription factors in plant heat stress tolerance: a brief appraisal. Mol Biol Rep. 2022;49(6):5771–85. doi:10.1007/s11033-022-07190-x.
   PubMedGoogle Scholar
• Haider S, Iqbal J, Naseer S, Yaseen T, Shaukat M, Bibi H, Mahmood T. Molecular mechanisms of plant tolerance to heat stress: current landscape and future perspectives. Plant Cell Rep. 2021;40(12):1–25. doi:10.1007/s00299-021-02696-3.
   PubMed Web of Science ®Google Scholar
• Haider S, Iqbal J, Naseer S, Shaukat M, Abbasi BA, Yaseen T, Mahmood T. Unfolding molecular switches in plant heat stress resistance: a comprehensive review. Plant Cell Rep. 2021;41(3):1–24. doi:10.1007/s00299-021-02754-w.
   PubMed Web of Science ®Google Scholar
• Katiyar A, Smita S, Lenka SK, Rajwanshi R, Chinnusamy V, Bansal KC. Genome-wide classification and expression analysis of MYB transcription factor families in rice and arabidopsis. BMC Genomics. 2012;13(1):1–19. doi:10.1186/1471-2164-13-544.
   PubMedGoogle Scholar
• Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhaofeng G, Li-Jia Q. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol. 2006;60(1):107–24. doi:10.1007/s11103-005-2910-y.
   PubMed Web of Science ®Google Scholar