The inference of HIV-1 transmission direction between a man who has sex with men and his heterosexual wife based on the sequences of HIV-1 quasi-species

References

• Catania JA, Osmond D, Stall RD, et al. The continuing HIV epidemic among men who have sex with men. Am J Public Health. 2001;91(6):907–914.
   PubMed Web of Science ®Google Scholar
• Dubois-Arber F, Masur JB, Hausser D, et al. Evaluation of AIDS prevention among homosexual and bisexual men in Switzerland. Soc Sci Med. 1993;37(12):1539–1544.
   Web of Science ®Google Scholar
• Chow EP, Koo FK, Zhang L. Are wives of gay men becoming the next target of HIV infection in China? Sex Transm Dis. 2013;40(12):964–965.
   PubMed Web of Science ®Google Scholar
• Zhang X, Yu J, Li M, et al. Prevalence and related risk behaviors of HIV, syphilis, and anal HPV infection among men who have sex with men from Beijing, China. AIDS Behav. 2013;17(3):1129–1136.
   Web of Science ®Google Scholar
• Xu J, Han D, Liu Z, et al. The prevalence of HIV infection and the risk factors among MSM in 4 cities, China. Zhonghua Yu Fang Yi Xue Za Zhi. 2010;44(11):975–980.
   PubMedGoogle Scholar
• Cao Z, Xu J, Zhang H, et al. Risk factors for syphilis among married men who have sex with men in China. Sex Transm Dis. 2014;41(2):98–102.
   Web of Science ®Google Scholar
• Chow EP, Wilson DP, Zhang J, et al. Human immunodeficiency virus prevalence is increasing among men who have sex with men in China: findings from a review and meta-analysis. Sex Transm Dis. 2011;38(9):845–857.
   PubMed Web of Science ®Google Scholar
• Qin Q, Guo W, Tang W, et al. Spatial analysis of the human immunodeficiency virus epidemic among men who have sex with men in China, 2006-2015. Clin Infect Dis. 2017;64(7):956–963.
   Web of Science ®Google Scholar
• NCAIDS, NCSTD. Update on the AIDS/STD epidemic in China in December. Chin J AIDS&STD. 2017;24(2):111.
   Google Scholar
• Li X, Zhang B, Wang J, et al. Sexual health status of women who have regular sexual relations with men who have sex with men in mainland China. BMC Public Health. 2017;17(1):168.
   Google Scholar
• Leitner T, Escanilla D, Franzen C, et al. Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis. Proc Natl Acad Sci U S A. 1996;93(20):10864–10869.
   PubMed Web of Science ®Google Scholar
• Ou CY, Ciesielski CA, Myers G, et al. Molecular epidemiology of HIV transmission in a dental practice. Science. 1992;256(5060):1165–1171.
   PubMed Web of Science ®Google Scholar
• Metzker ML, Mindell DP, Liu XM, et al. Molecular evidence of HIV-1 transmission in a criminal case. Proc Natl Acad Sci U S A. 2002;99(22):14292–14297.
   Web of Science ®Google Scholar
• Lemey P, Van Dooren S, Van Laethem K, et al. Molecular testing of multiple HIV-1 transmissions in a criminal case. AIDS. 2005;19(15):1649–1658.
   Web of Science ®Google Scholar
• Wu J, Hu Z, Yao H, et al. The inference of HIV-1 transmission direction between HIV-1 positive couples based on the sequences of HIV-1 quasi-species. BMC Infect Dis. 2019;19(1):566.
   Google Scholar
• Leitner T, Romero-Severson E. Phylogenetic patterns recover known HIV epidemiological relationships and reveal common transmission of multiple variants. Nat Microbiol. 2018;3(9):983–988.
   Web of Science ®Google Scholar
• Romero-Severson EO, Bulla I, Leitner T. Phylogenetically resolving epidemiologic linkage. Proc Natl Acad Sci U S A. 2016;113(10):2690–2695.
   Web of Science ®Google Scholar
• Zhang BC, Chu QS. MSM and HIV/AIDS in China. Cell Res. 2005;15(11–12):858–864.
   PubMed Web of Science ®Google Scholar
• Shang H, Xu J, Han X, et al. HIV prevention: bring safe sex to China. Nature. 2012;485(7400):576–577.
   Web of Science ®Google Scholar
• Jia Z, Huang X, Wu H, et al. HIV burden in men who have sex with men: a prospective cohort study 2007-2012. Sci Rep. 2015;5:11205.
   Web of Science ®Google Scholar
• Luan H, Han X, Yu X, et al. Dual infection contributes to rapid Disease progression in Men Who have Sex With Men in China. J Acquir Immune Defic Syndr. 2017;75(4):480–487.
   Web of Science ®Google Scholar
• Palmer S, Kearney M, Maldarelli F, et al. Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis. J Clin Microbiol. 2005;43(1):406–413.
   Web of Science ®Google Scholar
• Sen S, Tripathy SP, Paranjape RS. Antiretroviral drug resistance testing. J Postgrad Med. 2006;52(3):187–193.
   Web of Science ®Google Scholar
• Salazar-Gonzalez JF, Bailes E, Pham KT, et al. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing. J Virol. 2008;82(8):3952–3970.
   PubMed Web of Science ®Google Scholar
• Keele BF, Giorgi EE, Salazar-Gonzalez JF, et al. Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA. 2008;105(21):7552–7557.
   PubMed Web of Science ®Google Scholar
• Feng Y, He X, Hsi JH, et al. The rapidly expanding CRF01_AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s. AIDS. 2013;27(11):1793–1802.
   PubMed Web of Science ®Google Scholar
• Ragonnet-Cronin M, Hué S, Hodcroft EB, et al. Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data. Lancet HIV. 2018;5(6):e309–e316.
   Web of Science ®Google Scholar
• Shang H, Zhang L. MSM and HIV-1 infection in China. Natl Sci Rev. 2015;2(4):388–391.
   Web of Science ®Google Scholar
• Wagner GA, Pacold ME, Kosakovsky Pond SL, et al. Incidence and prevalence of intrasubtype HIV-1 dual infection in at-risk men in the United States. J Infect Dis. 2014;209(7):1032–1038.
   Web of Science ®Google Scholar
• Djoko CF, Wolfe ND, Vidal N, et al. HIV type 1 pol gene diversity and genotypic antiretroviral drug resistance mutations in Malabo, Equatorial Guinea. AIDS Res Hum Retroviruses. 2010;26(9):1027–1031.
   Web of Science ®Google Scholar
• Yu F, Wen Y, Wang J, et al. The transmission and evolution of HIV-1 Quasispecies within One couple: a follow-up study based on next-generation sequencing. Sci Rep. 2018;8(1):1404.
   PubMedGoogle Scholar
• Ramos A, Hu DJ, Nguyen L, et al. Intersubtype human immunodeficiency virus type 1 superinfection following seroconversion to primary infection in two injection drug users. J Virol. 2002;76(15):7444–7452.
   PubMed Web of Science ®Google Scholar
• Jost S, Bernard MC, Kaiser L, et al. A patient with HIV-1 superinfection. N Engl J Med. 2002;347(10):731–736.
   PubMed Web of Science ®Google Scholar
• Templeton AR, Kramer MG, Jarvis J, et al. Multiple-infection and recombination in HIV-1 within a longitudinal cohort of women. Retrovirology. 2009;6:54.
   Web of Science ®Google Scholar